BDGP Sequence Production Resources |
Search the DGRC for RE16648
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 166 |
Well: | 48 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG33695-RF |
Protein status: | RE16648.pep: gold |
Sequenced Size: | 1472 |
Gene | Date | Evidence |
---|---|---|
CG32955 | 2004-03-31 | Blastp of sequenced clone |
CG33695 | 2008-04-29 | Release 5.5 accounting |
CG33695 | 2008-08-15 | Release 5.9 accounting |
cana | 2008-08-15 | Release 5.9 accounting |
CG33695 | 2008-12-18 | 5.12 accounting |
cana | 2008-12-18 | 5.12 accounting |
1472 bp (1472 high quality bases) assembled on 2004-03-31
GenBank Submission: BT012476
> RE16648.complete ACATCCGCCGGCAGCTCCGACCGCGTTGATCCCGTCGCCAGCGCCTCCGC GCGTTGCAAGCGAGAAAAAGGCGGCGCGGGAGAGAGTCGAGAGTCATTCG TTTGTCTCACTCCTGCGAGTGGGAAATTTGTTGTTCCACCGTGAGTGGGC CGGCGGGCGGTGGGCAGGGGCGGTGGGGGAGATATTCACGGCCGCCGGAC AGGCGTTCAGCAGACTGGGCGATCTAACCATGCAGCTGCATCCCAATGCG GAGTCGCCATCGGGGAAGTGGACGGACGAGGAGATCGACATGCTGCACTC GTCCATAATGCGCTTCTCCGACGACCTGACCAAGATCAGCCTAAGCATCA AGAACCGCACCGTTTCTCAGATCCGCCAGGCGCTGAAGAAGAAGGCCTTC GAGGACGCCGGCATTCCCGCCAAGCAAGTGCCCGTCCAGCAGGTGCAACA CGTTCTCCAGACGCTGCCACAACAGCAGCCGCAGCAGCCCCTTCAGCAGC CACCTCCTCAAGTATTCAAGTCACAGCCAATCGTGCAGCACGTACAGCTG GTGGCGCAGCCAAAGCAGATCATCCTGCATCCACAGTCTAATACAACTAC GACGGGCACGACGGTGACTGTTAAGCAGTACCAGCAGATGCAGAAGGCTG CGGCATTAGCGGCAGCCCAGGCTGCAGCCTCGACGGCCAACAACACGCCC ACCATCACGGAGAACATCATTATCCAGCAGCCCACTTCGACTACGGCGAC AGTGGTGCAGCAGCCACATATGGTGTCCACCTGCTCGTCGACGCAGATCG TGGTGCCCGTTGTGTCGGCAGTGTCCACTGTTCCAACAGTACTCTCGCCC ACGGTGGTGATTGCCGACGATGTGGTTAGCACCTCCAATCCTCCAGCGGC AGCGGCGACAGTAGGATCGCCAGCAGGGGCGCCAGCAGGCTTAAAGTGCG GACCAGACGTGTCCATGACCCTCAATCGCATCAATGTCCAGGAGAACGAG GTGGACGTGGAGGAGTGCCTGCCCGCAGAGGTGGTCAAGCTGGATTTTGT CAGCGAGGAGGTGGCCGGGTGAGGTTCGAGCCCTCGGAACGGGCTGGACT TCTTCTACTAGATCTCCGGCCGCAGAACGAATCACGTAACTTGGAACAGA ACCGCTACAAATCCAGATCGAGAACTCTTAAGCAAAAAGGTTGAGATGCC GCCCTAGCCCTAAGTCTAAACTGTTAAGTGTTGTCATATTTGATATACCC TGAAATCACCTTGTTCCGGGCCCCGGATGACAAATGAATTGTGCGATGTG GAGGACGAGTCTGTGGATCGCCAGCCACAGAGCGTAGATATTAATTGCGG AGCGTATATGCGCCGCCTAGACTTAAATTTACGCAAGACACAATAGTGCA AAGTACATAACGACGATCGTGTAAGTTGAGAGTGAATAAACGAGCATTAT TTTAAGAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 11277493..11278585 | 364..1456 | 5420 | 99.7 | Plus |
chr2L | 23010047 | chr2L | 11276889..11277063 | 1..175 | 875 | 100 | Plus |
chr2L | 23010047 | chr2L | 11277312..11277411 | 264..363 | 500 | 100 | Plus |
chr2L | 23010047 | chr2L | 11277131..11277224 | 172..265 | 470 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 11278755..11279848 | 364..1457 | 5470 | 100 | Plus |
2L | 23513712 | 2L | 11278151..11278325 | 1..175 | 875 | 100 | Plus |
2L | 23513712 | 2L | 11278574..11278673 | 264..363 | 500 | 100 | Plus |
2L | 23513712 | 2L | 11278393..11278486 | 172..265 | 470 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 11278755..11279848 | 364..1457 | 5470 | 100 | Plus |
2L | 23513712 | 2L | 11278151..11278325 | 1..175 | 875 | 100 | Plus |
2L | 23513712 | 2L | 11278574..11278673 | 264..363 | 500 | 100 | Plus |
2L | 23513712 | 2L | 11278393..11278486 | 172..265 | 470 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..7028 | 438..744 | 198 | 55.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6809..6939 | 437..567 | 169 | 58.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6941 | 463..681 | 163 | 58.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2373 | 437..500 | 140 | 68.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6761..6827 | 437..503 | 137 | 67.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2602 | 458..768 | 135 | 54 | Plus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9122..9224 | 400..500 | 132 | 60.2 | Plus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 92..194 | 400..500 | 132 | 60.2 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1067..1108 | 458..499 | 129 | 78.6 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1091..1168 | 437..513 | 126 | 64.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2808..2860 | 458..510 | 121 | 69.8 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 11277132..11277223 | 173..264 | 100 | -> | Plus |
chr2L | 11277313..11277411 | 265..363 | 100 | -> | Plus |
chr2L | 11276889..11277060 | 1..172 | 100 | -> | Plus |
chr2L | 11277493..11278585 | 364..1456 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG33695-RE | 18..918 | 172..1072 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG33695-RE | 18..918 | 172..1072 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG33695-RE | 18..918 | 172..1072 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG33695-RE | 18..918 | 172..1072 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG33695-RE | 18..918 | 172..1072 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG33695-RF | 1..1456 | 1..1456 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG33695-RF | 1..1456 | 1..1456 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG33695-RF | 1..1456 | 1..1456 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG33695-RF | 1..1456 | 1..1456 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG33695-RF | 1..1456 | 1..1456 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 11278151..11278322 | 1..172 | 100 | -> | Plus |
2L | 11278394..11278485 | 173..264 | 100 | -> | Plus |
2L | 11278575..11278673 | 265..363 | 100 | -> | Plus |
2L | 11278755..11279847 | 364..1456 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 11278151..11278322 | 1..172 | 100 | -> | Plus |
2L | 11278394..11278485 | 173..264 | 100 | -> | Plus |
2L | 11278575..11278673 | 265..363 | 100 | -> | Plus |
2L | 11278755..11279847 | 364..1456 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 11278151..11278322 | 1..172 | 100 | -> | Plus |
2L | 11278394..11278485 | 173..264 | 100 | -> | Plus |
2L | 11278575..11278673 | 265..363 | 100 | -> | Plus |
2L | 11278755..11279847 | 364..1456 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 11278394..11278485 | 173..264 | 100 | -> | Plus |
arm_2L | 11278575..11278673 | 265..363 | 100 | -> | Plus |
arm_2L | 11278151..11278322 | 1..172 | 100 | -> | Plus |
arm_2L | 11278755..11279847 | 364..1456 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 11278755..11279847 | 364..1456 | 100 | Plus | |
2L | 11278151..11278322 | 1..172 | 100 | -> | Plus |
2L | 11278394..11278485 | 173..264 | 100 | -> | Plus |
2L | 11278575..11278673 | 265..363 | 100 | -> | Plus |
Translation from 0 to 1071
> RE16648.hyp HPPAAPTALIPSPAPPRVASEKKAARERVESHSFVSLLRVGNLLFHREWA GGRWAGAVGEIFTAAGQAFSRLGDLTMQLHPNAESPSGKWTDEEIDMLHS SIMRFSDDLTKISLSIKNRTVSQIRQALKKKAFEDAGIPAKQVPVQQVQH VLQTLPQQQPQQPLQQPPPQVFKSQPIVQHVQLVAQPKQIILHPQSNTTT TGTTVTVKQYQQMQKAAALAAAQAAASTANNTPTITENIIIQQPTSTTAT VVQQPHMVSTCSSTQIVVPVVSAVSTVPTVLSPTVVIADDVVSTSNPPAA AATVGSPAGAPAGLKCGPDVSMTLNRINVQENEVDVEECLPAEVVKLDFV SEEVAG*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG33695-PE | 305 | CG33695-PE | 7..305 | 58..356 | 1496 | 100 | Plus |
CG33695-PF | 280 | CG33695-PF | 1..280 | 77..356 | 1403 | 100 | Plus |
CG33695-PC | 272 | CG33695-PC | 7..272 | 58..356 | 1285 | 89 | Plus |
CG33695-PD | 274 | CG33695-PD | 9..274 | 58..356 | 1285 | 89 | Plus |
Translation from 229 to 1071
> RE16648.pep MQLHPNAESPSGKWTDEEIDMLHSSIMRFSDDLTKISLSIKNRTVSQIRQ ALKKKAFEDAGIPAKQVPVQQVQHVLQTLPQQQPQQPLQQPPPQVFKSQP IVQHVQLVAQPKQIILHPQSNTTTTGTTVTVKQYQQMQKAAALAAAQAAA STANNTPTITENIIIQQPTSTTATVVQQPHMVSTCSSTQIVVPVVSAVST VPTVLSPTVVIADDVVSTSNPPAAAATVGSPAGAPAGLKCGPDVSMTLNR INVQENEVDVEECLPAEVVKLDFVSEEVAG*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF14768-PA | 321 | GF14768-PA | 26..321 | 1..280 | 749 | 67.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG23716-PA | 304 | GG23716-PA | 26..304 | 1..280 | 1384 | 97.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH13390-PA | 287 | GH13390-PA | 26..287 | 1..280 | 649 | 63.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG33695-PE | 305 | CG33695-PE | 26..305 | 1..280 | 1403 | 100 | Plus |
CG33695-PF | 280 | CG33695-PF | 1..280 | 1..280 | 1403 | 100 | Plus |
CG33695-PC | 272 | CG33695-PC | 26..272 | 1..280 | 1192 | 88.2 | Plus |
CG33695-PD | 274 | CG33695-PD | 28..274 | 1..280 | 1192 | 88.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI20672-PA | 311 | GI20672-PA | 26..90 | 1..65 | 356 | 98.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL19553-PA | 309 | GL19553-PA | 26..309 | 1..280 | 670 | 63.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA26007-PA | 308 | GA26007-PA | 26..308 | 1..280 | 713 | 66.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM18984-PA | 304 | GM18984-PA | 26..304 | 1..280 | 1407 | 98.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD23773-PA | 304 | GD23773-PA | 26..304 | 1..280 | 1410 | 99.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ13267-PA | 295 | GJ13267-PA | 26..295 | 1..280 | 611 | 62.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK14901-PA | 309 | GK14901-PA | 26..309 | 1..280 | 631 | 60 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE18521-PA | 304 | GE18521-PA | 26..304 | 1..280 | 1380 | 97.5 | Plus |