Clone RE16648 Report

Search the DGRC for RE16648

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:166
Well:48
Vector:pFlc-1
Associated Gene/TranscriptCG33695-RF
Protein status:RE16648.pep: gold
Sequenced Size:1472

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG32955 2004-03-31 Blastp of sequenced clone
CG33695 2008-04-29 Release 5.5 accounting
CG33695 2008-08-15 Release 5.9 accounting
cana 2008-08-15 Release 5.9 accounting
CG33695 2008-12-18 5.12 accounting
cana 2008-12-18 5.12 accounting

Clone Sequence Records

RE16648.complete Sequence

1472 bp (1472 high quality bases) assembled on 2004-03-31

GenBank Submission: BT012476

> RE16648.complete
ACATCCGCCGGCAGCTCCGACCGCGTTGATCCCGTCGCCAGCGCCTCCGC
GCGTTGCAAGCGAGAAAAAGGCGGCGCGGGAGAGAGTCGAGAGTCATTCG
TTTGTCTCACTCCTGCGAGTGGGAAATTTGTTGTTCCACCGTGAGTGGGC
CGGCGGGCGGTGGGCAGGGGCGGTGGGGGAGATATTCACGGCCGCCGGAC
AGGCGTTCAGCAGACTGGGCGATCTAACCATGCAGCTGCATCCCAATGCG
GAGTCGCCATCGGGGAAGTGGACGGACGAGGAGATCGACATGCTGCACTC
GTCCATAATGCGCTTCTCCGACGACCTGACCAAGATCAGCCTAAGCATCA
AGAACCGCACCGTTTCTCAGATCCGCCAGGCGCTGAAGAAGAAGGCCTTC
GAGGACGCCGGCATTCCCGCCAAGCAAGTGCCCGTCCAGCAGGTGCAACA
CGTTCTCCAGACGCTGCCACAACAGCAGCCGCAGCAGCCCCTTCAGCAGC
CACCTCCTCAAGTATTCAAGTCACAGCCAATCGTGCAGCACGTACAGCTG
GTGGCGCAGCCAAAGCAGATCATCCTGCATCCACAGTCTAATACAACTAC
GACGGGCACGACGGTGACTGTTAAGCAGTACCAGCAGATGCAGAAGGCTG
CGGCATTAGCGGCAGCCCAGGCTGCAGCCTCGACGGCCAACAACACGCCC
ACCATCACGGAGAACATCATTATCCAGCAGCCCACTTCGACTACGGCGAC
AGTGGTGCAGCAGCCACATATGGTGTCCACCTGCTCGTCGACGCAGATCG
TGGTGCCCGTTGTGTCGGCAGTGTCCACTGTTCCAACAGTACTCTCGCCC
ACGGTGGTGATTGCCGACGATGTGGTTAGCACCTCCAATCCTCCAGCGGC
AGCGGCGACAGTAGGATCGCCAGCAGGGGCGCCAGCAGGCTTAAAGTGCG
GACCAGACGTGTCCATGACCCTCAATCGCATCAATGTCCAGGAGAACGAG
GTGGACGTGGAGGAGTGCCTGCCCGCAGAGGTGGTCAAGCTGGATTTTGT
CAGCGAGGAGGTGGCCGGGTGAGGTTCGAGCCCTCGGAACGGGCTGGACT
TCTTCTACTAGATCTCCGGCCGCAGAACGAATCACGTAACTTGGAACAGA
ACCGCTACAAATCCAGATCGAGAACTCTTAAGCAAAAAGGTTGAGATGCC
GCCCTAGCCCTAAGTCTAAACTGTTAAGTGTTGTCATATTTGATATACCC
TGAAATCACCTTGTTCCGGGCCCCGGATGACAAATGAATTGTGCGATGTG
GAGGACGAGTCTGTGGATCGCCAGCCACAGAGCGTAGATATTAATTGCGG
AGCGTATATGCGCCGCCTAGACTTAAATTTACGCAAGACACAATAGTGCA
AAGTACATAACGACGATCGTGTAAGTTGAGAGTGAATAAACGAGCATTAT
TTTAAGAAAAAAAAAAAAAAAA

RE16648.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:02:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG33695-RF 1456 CG33695-RF 1..1456 1..1456 7280 100 Plus
cana-RA 7987 cana-RA 6703..7987 172..1456 6425 100 Plus
CG33695-RA 7987 CG33695-RA 6703..7987 172..1456 6425 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:44:09
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 11277493..11278585 364..1456 5420 99.7 Plus
chr2L 23010047 chr2L 11276889..11277063 1..175 875 100 Plus
chr2L 23010047 chr2L 11277312..11277411 264..363 500 100 Plus
chr2L 23010047 chr2L 11277131..11277224 172..265 470 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:38:02 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:44:07
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11278755..11279848 364..1457 5470 100 Plus
2L 23513712 2L 11278151..11278325 1..175 875 100 Plus
2L 23513712 2L 11278574..11278673 264..363 500 100 Plus
2L 23513712 2L 11278393..11278486 172..265 470 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:51:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11278755..11279848 364..1457 5470 100 Plus
2L 23513712 2L 11278151..11278325 1..175 875 100 Plus
2L 23513712 2L 11278574..11278673 264..363 500 100 Plus
2L 23513712 2L 11278393..11278486 172..265 470 100 Plus
Blast to na_te.dros performed 2019-03-16 12:44:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..7028 438..744 198 55.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6809..6939 437..567 169 58.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6724..6941 463..681 163 58.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2310..2373 437..500 140 68.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6761..6827 437..503 137 67.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2310..2602 458..768 135 54 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 9122..9224 400..500 132 60.2 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 92..194 400..500 132 60.2 Plus
roo 9092 roo DM_ROO 9092bp 1067..1108 458..499 129 78.6 Plus
roo 9092 roo DM_ROO 9092bp 1091..1168 437..513 126 64.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2808..2860 458..510 121 69.8 Plus

RE16648.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:44:46 Download gff for RE16648.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 11277132..11277223 173..264 100 -> Plus
chr2L 11277313..11277411 265..363 100 -> Plus
chr2L 11276889..11277060 1..172 100 -> Plus
chr2L 11277493..11278585 364..1456 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:58:10 Download gff for RE16648.complete
Subject Subject Range Query Range Percent Splice Strand
CG33695-RE 18..918 172..1072 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:38:12 Download gff for RE16648.complete
Subject Subject Range Query Range Percent Splice Strand
CG33695-RE 18..918 172..1072 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:38:23 Download gff for RE16648.complete
Subject Subject Range Query Range Percent Splice Strand
CG33695-RE 18..918 172..1072 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:21:58 Download gff for RE16648.complete
Subject Subject Range Query Range Percent Splice Strand
CG33695-RE 18..918 172..1072 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:53:26 Download gff for RE16648.complete
Subject Subject Range Query Range Percent Splice Strand
CG33695-RE 18..918 172..1072 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:46:09 Download gff for RE16648.complete
Subject Subject Range Query Range Percent Splice Strand
CG33695-RF 1..1456 1..1456 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:38:12 Download gff for RE16648.complete
Subject Subject Range Query Range Percent Splice Strand
CG33695-RF 1..1456 1..1456 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:38:23 Download gff for RE16648.complete
Subject Subject Range Query Range Percent Splice Strand
CG33695-RF 1..1456 1..1456 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:21:59 Download gff for RE16648.complete
Subject Subject Range Query Range Percent Splice Strand
CG33695-RF 1..1456 1..1456 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:53:26 Download gff for RE16648.complete
Subject Subject Range Query Range Percent Splice Strand
CG33695-RF 1..1456 1..1456 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:44:46 Download gff for RE16648.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11278151..11278322 1..172 100 -> Plus
2L 11278394..11278485 173..264 100 -> Plus
2L 11278575..11278673 265..363 100 -> Plus
2L 11278755..11279847 364..1456 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:44:46 Download gff for RE16648.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11278151..11278322 1..172 100 -> Plus
2L 11278394..11278485 173..264 100 -> Plus
2L 11278575..11278673 265..363 100 -> Plus
2L 11278755..11279847 364..1456 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:44:46 Download gff for RE16648.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11278151..11278322 1..172 100 -> Plus
2L 11278394..11278485 173..264 100 -> Plus
2L 11278575..11278673 265..363 100 -> Plus
2L 11278755..11279847 364..1456 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:38:23 Download gff for RE16648.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11278394..11278485 173..264 100 -> Plus
arm_2L 11278575..11278673 265..363 100 -> Plus
arm_2L 11278151..11278322 1..172 100 -> Plus
arm_2L 11278755..11279847 364..1456 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:59:26 Download gff for RE16648.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11278755..11279847 364..1456 100   Plus
2L 11278151..11278322 1..172 100 -> Plus
2L 11278394..11278485 173..264 100 -> Plus
2L 11278575..11278673 265..363 100 -> Plus

RE16648.hyp Sequence

Translation from 0 to 1071

> RE16648.hyp
HPPAAPTALIPSPAPPRVASEKKAARERVESHSFVSLLRVGNLLFHREWA
GGRWAGAVGEIFTAAGQAFSRLGDLTMQLHPNAESPSGKWTDEEIDMLHS
SIMRFSDDLTKISLSIKNRTVSQIRQALKKKAFEDAGIPAKQVPVQQVQH
VLQTLPQQQPQQPLQQPPPQVFKSQPIVQHVQLVAQPKQIILHPQSNTTT
TGTTVTVKQYQQMQKAAALAAAQAAASTANNTPTITENIIIQQPTSTTAT
VVQQPHMVSTCSSTQIVVPVVSAVSTVPTVLSPTVVIADDVVSTSNPPAA
AATVGSPAGAPAGLKCGPDVSMTLNRINVQENEVDVEECLPAEVVKLDFV
SEEVAG*

RE16648.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:18:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG33695-PE 305 CG33695-PE 7..305 58..356 1496 100 Plus
CG33695-PF 280 CG33695-PF 1..280 77..356 1403 100 Plus
CG33695-PC 272 CG33695-PC 7..272 58..356 1285 89 Plus
CG33695-PD 274 CG33695-PD 9..274 58..356 1285 89 Plus

RE16648.pep Sequence

Translation from 229 to 1071

> RE16648.pep
MQLHPNAESPSGKWTDEEIDMLHSSIMRFSDDLTKISLSIKNRTVSQIRQ
ALKKKAFEDAGIPAKQVPVQQVQHVLQTLPQQQPQQPLQQPPPQVFKSQP
IVQHVQLVAQPKQIILHPQSNTTTTGTTVTVKQYQQMQKAAALAAAQAAA
STANNTPTITENIIIQQPTSTTATVVQQPHMVSTCSSTQIVVPVVSAVST
VPTVLSPTVVIADDVVSTSNPPAAAATVGSPAGAPAGLKCGPDVSMTLNR
INVQENEVDVEECLPAEVVKLDFVSEEVAG*

RE16648.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 16:28:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14768-PA 321 GF14768-PA 26..321 1..280 749 67.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 16:28:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23716-PA 304 GG23716-PA 26..304 1..280 1384 97.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 16:28:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13390-PA 287 GH13390-PA 26..287 1..280 649 63.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:30:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG33695-PE 305 CG33695-PE 26..305 1..280 1403 100 Plus
CG33695-PF 280 CG33695-PF 1..280 1..280 1403 100 Plus
CG33695-PC 272 CG33695-PC 26..272 1..280 1192 88.2 Plus
CG33695-PD 274 CG33695-PD 28..274 1..280 1192 88.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 16:28:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20672-PA 311 GI20672-PA 26..90 1..65 356 98.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 16:28:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19553-PA 309 GL19553-PA 26..309 1..280 670 63.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 16:28:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA26007-PA 308 GA26007-PA 26..308 1..280 713 66.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 16:28:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18984-PA 304 GM18984-PA 26..304 1..280 1407 98.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 16:28:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23773-PA 304 GD23773-PA 26..304 1..280 1410 99.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 16:28:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13267-PA 295 GJ13267-PA 26..295 1..280 611 62.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 16:28:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14901-PA 309 GK14901-PA 26..309 1..280 631 60 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 16:28:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18521-PA 304 GE18521-PA 26..304 1..280 1380 97.5 Plus