Clone RE16687 Report

Search the DGRC for RE16687

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:166
Well:87
Vector:pFlc-1
Associated Gene/TranscriptOrc5-RA
Protein status:RE16687.pep: gold
Preliminary Size:1524
Sequenced Size:1684

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7833 2002-01-01 Sim4 clustering to Release 2
CG7833 2002-02-26 Blastp of sequenced clone
CG7833 2003-01-01 Sim4 clustering to Release 3
Orc5 2008-04-29 Release 5.5 accounting
Orc5 2008-08-15 Release 5.9 accounting
Orc5 2008-12-18 5.12 accounting

Clone Sequence Records

RE16687.complete Sequence

1684 bp (1684 high quality bases) assembled on 2002-02-26

GenBank Submission: AY089590

> RE16687.complete
ATTTTCAATGGTCACACTAAACAGAAACCATTTCTTGTAAACAAATTTTT
AATAACTGGCTGGCTCGTAATTTATTTTTGTTATTTTATAAACCGAGGAA
GTATTTTCCCTTTTGAAAGCCCGTTTAAATAACACCACTTCGCTGTGGGT
AGCTGAGGAAACTTAAAAGCAGACGACAGCTATGGAAGCCATCTGCTCCT
CCTTGGAGCCGCTGTTTCCCTGTCGGGAGGCGGCCATTGAAACGCTGGGC
GAGCTGATAGGAGATTCGAGTGAGACATATCCCTCGGCAATTTACCTATT
CGGACACAGTGGAACCGGCAAAACAGCTCTGACCAGAGCTTTCCTCAAAG
AATGTGGAAAACGGCAAAATGTCCGCACAGCGCATTTAAATGCCATCGAA
TGCTACACCACCAAGATAATGCTGGAGATCCTGTTAGACTCGCTGGCACC
CGATCAAGGTGATGCGCTGAAGGTCGACAACATGCTGGACTTTGTGGAGC
AGCTGCGTCGGCAGGCCGCTACACGCGTGGAGGATCAGGGATTTCTCATA
GCCGTGGATAACGCGGAAAGGCTGCGCGACATGGATGCCAATGTGTTGCC
CGTTCTTCTCCGACTGCAGGAGCTGACCAACCTGAATCTGTGCGTTATTC
TGCTCTCCCAGCTGCCCTTTGAGAAGTTCTACAACAAGACCGGACTTAGT
GAAATCGTCTGCCTGCACTTGGCGCAGTACAACAAGGCGGAGACACAGCG
CATCCTGGGATCTGACTTTCAGCAGGTGCGAAATCAACTGCTGGAACAGT
TCGCCCAGGATAAGAAGCGTCTGGAGATTTGCCAGGAAGCCGTAACTGAA
GACTTCTACAACAACTATCTGAATCTCTTTCTGAGCGTCTTTTACAAAGC
CTGTCGCGATGTTCCAGAGCTCCAGCTGACCGCCAGGAAGTGTCTGTCCA
CATACTTGGAGCCTGTACTCGACGGCACTGTGGATGCCACGGACATCTCC
CGGCTTTGGCGGCATATAGCTGGACCACTGCGTTCCGCCTTAACCCAGAT
TTATATGCGAATTGAAAAACCCGCGGAAGAAGTTGAAGATTTCACCGCCA
TAGAAGATCAGAGCGTTCGCAAGCTGGCGCAGTCGCTGGAGCTGCCCTAC
TATGCCAAATTTCTGTTGATCGCTGCCTTCTTAGCCAGCCACAATGCCGC
CAAGCAGGACAAGCGATTGTTCGTCAAGCACCATGGAAAACAGCGAAAGC
GGATGCAGACGGTCAACGCCAGAGCCAAGACCACGGAGAAAATGTCCACC
ACTTTGGGACCCAAATCCTTTAGCATCGATCGTTTGCTGGCCATTTTCTA
CGCCATTCTAGAGGAGAAAGTCGGTCTGACCTGCAACCTTCTCTCCCAGA
TCTCAACTTTGGTGCACCTCAATCTACTAAGCTTCGTCTCCGGCGAACAA
AACATAATGGAAGGTTCCGCTAGGCTGCAGTGCACCATTGGCTTGGAGTT
TGTCCTGCAGATTGGCAAGGTGGTGGGCTTTAATGTCCGCCAATATCTCT
GCGACTTTATGTAGCCCCTGGTTGTTTTTTTTAGTTTTTAAATATATTTA
ATAAATAGTCCGGTACATCGCTTATGTGTATGGTCTCCGCCAGCCTTGTG
TCCCGGCTGCGCAACTGCAAAAAAAAAAAAAAAA

RE16687.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:24:25
Subject Length Description Subject Range Query Range Score Percent Strand
Orc5-RA 1837 Orc5-RA 167..1834 3..1669 8300 99.9 Plus
CG33649-RA 1634 CG33649-RA 1537..1634 1669..1572 490 100 Minus
DNApol-gamma35-RA 1634 DNApol-gamma35-RA 1537..1634 1669..1572 490 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:31:00
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 13828596..13829873 3..1279 6310 99.8 Plus
chr2L 23010047 chr2L 13829925..13830315 1278..1668 1955 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:38:05 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:30:58
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13829857..13831134 3..1279 6340 99.9 Plus
2L 23513712 2L 13831186..13831577 1278..1669 1960 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:53:36
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13829857..13831134 3..1279 6350 99.9 Plus
2L 23513712 2L 13831186..13831577 1278..1669 1960 100 Plus
Blast to na_te.dros performed on 2019-03-16 22:30:58 has no hits.

RE16687.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:32:01 Download gff for RE16687.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 13828595..13829873 1..1279 99 -> Plus
chr2L 13829927..13830315 1280..1668 91   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:58:13 Download gff for RE16687.complete
Subject Subject Range Query Range Percent Splice Strand
Orc5-RA 1..1383 182..1564 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:35:55 Download gff for RE16687.complete
Subject Subject Range Query Range Percent Splice Strand
Orc5-RA 1..1383 182..1564 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:15:11 Download gff for RE16687.complete
Subject Subject Range Query Range Percent Splice Strand
Orc5-RA 1..1383 182..1564 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:07:26 Download gff for RE16687.complete
Subject Subject Range Query Range Percent Splice Strand
Orc5-RA 1..1383 182..1564 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:40:05 Download gff for RE16687.complete
Subject Subject Range Query Range Percent Splice Strand
Orc5-RA 1..1383 182..1564 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:01:26 Download gff for RE16687.complete
Subject Subject Range Query Range Percent Splice Strand
Orc5-RA 166..1833 1..1668 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:35:55 Download gff for RE16687.complete
Subject Subject Range Query Range Percent Splice Strand
Orc5-RA 166..1833 1..1668 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:15:11 Download gff for RE16687.complete
Subject Subject Range Query Range Percent Splice Strand
Orc5-RA 20..1687 1..1668 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:07:26 Download gff for RE16687.complete
Subject Subject Range Query Range Percent Splice Strand
Orc5-RA 166..1833 1..1668 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:40:05 Download gff for RE16687.complete
Subject Subject Range Query Range Percent Splice Strand
Orc5-RA 20..1687 1..1668 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:32:01 Download gff for RE16687.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13829856..13831134 1..1279 99 -> Plus
2L 13831188..13831576 1280..1668 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:32:01 Download gff for RE16687.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13829856..13831134 1..1279 99 -> Plus
2L 13831188..13831576 1280..1668 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:32:01 Download gff for RE16687.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13829856..13831134 1..1279 99 -> Plus
2L 13831188..13831576 1280..1668 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:15:11 Download gff for RE16687.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13829856..13831134 1..1279 99 -> Plus
arm_2L 13831188..13831576 1280..1668 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:41:22 Download gff for RE16687.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13829856..13831134 1..1279 99 -> Plus
2L 13831188..13831576 1280..1668 100   Plus

RE16687.hyp Sequence

Translation from 181 to 1563

> RE16687.hyp
MEAICSSLEPLFPCREAAIETLGELIGDSSETYPSAIYLFGHSGTGKTAL
TRAFLKECGKRQNVRTAHLNAIECYTTKIMLEILLDSLAPDQGDALKVDN
MLDFVEQLRRQAATRVEDQGFLIAVDNAERLRDMDANVLPVLLRLQELTN
LNLCVILLSQLPFEKFYNKTGLSEIVCLHLAQYNKAETQRILGSDFQQVR
NQLLEQFAQDKKRLEICQEAVTEDFYNNYLNLFLSVFYKACRDVPELQLT
ARKCLSTYLEPVLDGTVDATDISRLWRHIAGPLRSALTQIYMRIEKPAEE
VEDFTAIEDQSVRKLAQSLELPYYAKFLLIAAFLASHNAAKQDKRLFVKH
HGKQRKRMQTVNARAKTTEKMSTTLGPKSFSIDRLLAIFYAILEEKVGLT
CNLLSQISTLVHLNLLSFVSGEQNIMEGSARLQCTIGLEFVLQIGKVVGF
NVRQYLCDFM*

RE16687.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:45:11
Subject Length Description Subject Range Query Range Score Percent Strand
Orc5-PA 460 CG7833-PA 1..460 1..460 2332 100 Plus

RE16687.pep Sequence

Translation from 181 to 1563

> RE16687.pep
MEAICSSLEPLFPCREAAIETLGELIGDSSETYPSAIYLFGHSGTGKTAL
TRAFLKECGKRQNVRTAHLNAIECYTTKIMLEILLDSLAPDQGDALKVDN
MLDFVEQLRRQAATRVEDQGFLIAVDNAERLRDMDANVLPVLLRLQELTN
LNLCVILLSQLPFEKFYNKTGLSEIVCLHLAQYNKAETQRILGSDFQQVR
NQLLEQFAQDKKRLEICQEAVTEDFYNNYLNLFLSVFYKACRDVPELQLT
ARKCLSTYLEPVLDGTVDATDISRLWRHIAGPLRSALTQIYMRIEKPAEE
VEDFTAIEDQSVRKLAQSLELPYYAKFLLIAAFLASHNAAKQDKRLFVKH
HGKQRKRMQTVNARAKTTEKMSTTLGPKSFSIDRLLAIFYAILEEKVGLT
CNLLSQISTLVHLNLLSFVSGEQNIMEGSARLQCTIGLEFVLQIGKVVGF
NVRQYLCDFM*

RE16687.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 23:34:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14261-PA 460 GF14261-PA 1..460 1..460 2033 82 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 23:34:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23886-PA 460 GG23886-PA 1..460 1..460 2334 95 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 23:34:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11118-PA 455 GH11118-PA 1..455 1..460 1854 76.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:14:32
Subject Length Description Subject Range Query Range Score Percent Strand
Orc5-PA 460 CG7833-PA 1..460 1..460 2332 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 23:34:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12550-PA 458 GI12550-PA 1..458 1..460 1893 76.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 23:34:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21237-PA 462 GL21237-PA 1..462 1..460 2061 83.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 23:34:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20617-PA 499 GA20617-PA 38..499 1..460 2061 83.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 23:34:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15275-PA 460 GM15275-PA 1..460 1..460 2400 97.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 23:34:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23929-PA 460 GD23929-PA 1..460 1..460 2400 97.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 23:34:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18148-PA 460 GJ18148-PA 1..460 1..460 1882 75.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 23:34:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15120-PA 469 GK15120-PA 1..469 1..460 1977 78.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 23:34:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18687-PA 460 GE18687-PA 1..460 1..460 2338 94.8 Plus