BDGP Sequence Production Resources |
Search the DGRC for RE16687
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 166 |
Well: | 87 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Orc5-RA |
Protein status: | RE16687.pep: gold |
Preliminary Size: | 1524 |
Sequenced Size: | 1684 |
Gene | Date | Evidence |
---|---|---|
CG7833 | 2002-01-01 | Sim4 clustering to Release 2 |
CG7833 | 2002-02-26 | Blastp of sequenced clone |
CG7833 | 2003-01-01 | Sim4 clustering to Release 3 |
Orc5 | 2008-04-29 | Release 5.5 accounting |
Orc5 | 2008-08-15 | Release 5.9 accounting |
Orc5 | 2008-12-18 | 5.12 accounting |
1684 bp (1684 high quality bases) assembled on 2002-02-26
GenBank Submission: AY089590
> RE16687.complete ATTTTCAATGGTCACACTAAACAGAAACCATTTCTTGTAAACAAATTTTT AATAACTGGCTGGCTCGTAATTTATTTTTGTTATTTTATAAACCGAGGAA GTATTTTCCCTTTTGAAAGCCCGTTTAAATAACACCACTTCGCTGTGGGT AGCTGAGGAAACTTAAAAGCAGACGACAGCTATGGAAGCCATCTGCTCCT CCTTGGAGCCGCTGTTTCCCTGTCGGGAGGCGGCCATTGAAACGCTGGGC GAGCTGATAGGAGATTCGAGTGAGACATATCCCTCGGCAATTTACCTATT CGGACACAGTGGAACCGGCAAAACAGCTCTGACCAGAGCTTTCCTCAAAG AATGTGGAAAACGGCAAAATGTCCGCACAGCGCATTTAAATGCCATCGAA TGCTACACCACCAAGATAATGCTGGAGATCCTGTTAGACTCGCTGGCACC CGATCAAGGTGATGCGCTGAAGGTCGACAACATGCTGGACTTTGTGGAGC AGCTGCGTCGGCAGGCCGCTACACGCGTGGAGGATCAGGGATTTCTCATA GCCGTGGATAACGCGGAAAGGCTGCGCGACATGGATGCCAATGTGTTGCC CGTTCTTCTCCGACTGCAGGAGCTGACCAACCTGAATCTGTGCGTTATTC TGCTCTCCCAGCTGCCCTTTGAGAAGTTCTACAACAAGACCGGACTTAGT GAAATCGTCTGCCTGCACTTGGCGCAGTACAACAAGGCGGAGACACAGCG CATCCTGGGATCTGACTTTCAGCAGGTGCGAAATCAACTGCTGGAACAGT TCGCCCAGGATAAGAAGCGTCTGGAGATTTGCCAGGAAGCCGTAACTGAA GACTTCTACAACAACTATCTGAATCTCTTTCTGAGCGTCTTTTACAAAGC CTGTCGCGATGTTCCAGAGCTCCAGCTGACCGCCAGGAAGTGTCTGTCCA CATACTTGGAGCCTGTACTCGACGGCACTGTGGATGCCACGGACATCTCC CGGCTTTGGCGGCATATAGCTGGACCACTGCGTTCCGCCTTAACCCAGAT TTATATGCGAATTGAAAAACCCGCGGAAGAAGTTGAAGATTTCACCGCCA TAGAAGATCAGAGCGTTCGCAAGCTGGCGCAGTCGCTGGAGCTGCCCTAC TATGCCAAATTTCTGTTGATCGCTGCCTTCTTAGCCAGCCACAATGCCGC CAAGCAGGACAAGCGATTGTTCGTCAAGCACCATGGAAAACAGCGAAAGC GGATGCAGACGGTCAACGCCAGAGCCAAGACCACGGAGAAAATGTCCACC ACTTTGGGACCCAAATCCTTTAGCATCGATCGTTTGCTGGCCATTTTCTA CGCCATTCTAGAGGAGAAAGTCGGTCTGACCTGCAACCTTCTCTCCCAGA TCTCAACTTTGGTGCACCTCAATCTACTAAGCTTCGTCTCCGGCGAACAA AACATAATGGAAGGTTCCGCTAGGCTGCAGTGCACCATTGGCTTGGAGTT TGTCCTGCAGATTGGCAAGGTGGTGGGCTTTAATGTCCGCCAATATCTCT GCGACTTTATGTAGCCCCTGGTTGTTTTTTTTAGTTTTTAAATATATTTA ATAAATAGTCCGGTACATCGCTTATGTGTATGGTCTCCGCCAGCCTTGTG TCCCGGCTGCGCAACTGCAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Orc5-RA | 1837 | Orc5-RA | 167..1834 | 3..1669 | 8300 | 99.9 | Plus |
CG33649-RA | 1634 | CG33649-RA | 1537..1634 | 1669..1572 | 490 | 100 | Minus |
DNApol-gamma35-RA | 1634 | DNApol-gamma35-RA | 1537..1634 | 1669..1572 | 490 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 13828595..13829873 | 1..1279 | 99 | -> | Plus |
chr2L | 13829927..13830315 | 1280..1668 | 91 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Orc5-RA | 1..1383 | 182..1564 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Orc5-RA | 1..1383 | 182..1564 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Orc5-RA | 1..1383 | 182..1564 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Orc5-RA | 1..1383 | 182..1564 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Orc5-RA | 1..1383 | 182..1564 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Orc5-RA | 166..1833 | 1..1668 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Orc5-RA | 166..1833 | 1..1668 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Orc5-RA | 20..1687 | 1..1668 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Orc5-RA | 166..1833 | 1..1668 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Orc5-RA | 20..1687 | 1..1668 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 13829856..13831134 | 1..1279 | 99 | -> | Plus |
2L | 13831188..13831576 | 1280..1668 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 13829856..13831134 | 1..1279 | 99 | -> | Plus |
2L | 13831188..13831576 | 1280..1668 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 13829856..13831134 | 1..1279 | 99 | -> | Plus |
2L | 13831188..13831576 | 1280..1668 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 13829856..13831134 | 1..1279 | 99 | -> | Plus |
arm_2L | 13831188..13831576 | 1280..1668 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 13829856..13831134 | 1..1279 | 99 | -> | Plus |
2L | 13831188..13831576 | 1280..1668 | 100 | Plus |
Translation from 181 to 1563
> RE16687.hyp MEAICSSLEPLFPCREAAIETLGELIGDSSETYPSAIYLFGHSGTGKTAL TRAFLKECGKRQNVRTAHLNAIECYTTKIMLEILLDSLAPDQGDALKVDN MLDFVEQLRRQAATRVEDQGFLIAVDNAERLRDMDANVLPVLLRLQELTN LNLCVILLSQLPFEKFYNKTGLSEIVCLHLAQYNKAETQRILGSDFQQVR NQLLEQFAQDKKRLEICQEAVTEDFYNNYLNLFLSVFYKACRDVPELQLT ARKCLSTYLEPVLDGTVDATDISRLWRHIAGPLRSALTQIYMRIEKPAEE VEDFTAIEDQSVRKLAQSLELPYYAKFLLIAAFLASHNAAKQDKRLFVKH HGKQRKRMQTVNARAKTTEKMSTTLGPKSFSIDRLLAIFYAILEEKVGLT CNLLSQISTLVHLNLLSFVSGEQNIMEGSARLQCTIGLEFVLQIGKVVGF NVRQYLCDFM*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Orc5-PA | 460 | CG7833-PA | 1..460 | 1..460 | 2332 | 100 | Plus |
Translation from 181 to 1563
> RE16687.pep MEAICSSLEPLFPCREAAIETLGELIGDSSETYPSAIYLFGHSGTGKTAL TRAFLKECGKRQNVRTAHLNAIECYTTKIMLEILLDSLAPDQGDALKVDN MLDFVEQLRRQAATRVEDQGFLIAVDNAERLRDMDANVLPVLLRLQELTN LNLCVILLSQLPFEKFYNKTGLSEIVCLHLAQYNKAETQRILGSDFQQVR NQLLEQFAQDKKRLEICQEAVTEDFYNNYLNLFLSVFYKACRDVPELQLT ARKCLSTYLEPVLDGTVDATDISRLWRHIAGPLRSALTQIYMRIEKPAEE VEDFTAIEDQSVRKLAQSLELPYYAKFLLIAAFLASHNAAKQDKRLFVKH HGKQRKRMQTVNARAKTTEKMSTTLGPKSFSIDRLLAIFYAILEEKVGLT CNLLSQISTLVHLNLLSFVSGEQNIMEGSARLQCTIGLEFVLQIGKVVGF NVRQYLCDFM*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF14261-PA | 460 | GF14261-PA | 1..460 | 1..460 | 2033 | 82 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG23886-PA | 460 | GG23886-PA | 1..460 | 1..460 | 2334 | 95 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH11118-PA | 455 | GH11118-PA | 1..455 | 1..460 | 1854 | 76.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Orc5-PA | 460 | CG7833-PA | 1..460 | 1..460 | 2332 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI12550-PA | 458 | GI12550-PA | 1..458 | 1..460 | 1893 | 76.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21237-PA | 462 | GL21237-PA | 1..462 | 1..460 | 2061 | 83.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA20617-PA | 499 | GA20617-PA | 38..499 | 1..460 | 2061 | 83.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM15275-PA | 460 | GM15275-PA | 1..460 | 1..460 | 2400 | 97.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD23929-PA | 460 | GD23929-PA | 1..460 | 1..460 | 2400 | 97.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ18148-PA | 460 | GJ18148-PA | 1..460 | 1..460 | 1882 | 75.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK15120-PA | 469 | GK15120-PA | 1..469 | 1..460 | 1977 | 78.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE18687-PA | 460 | GE18687-PA | 1..460 | 1..460 | 2338 | 94.8 | Plus |