BDGP Sequence Production Resources |
Search the DGRC for RE16720
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 167 |
Well: | 20 |
Vector: | pFlc-1 |
Associated Gene/Transcript | MED22-RA |
Protein status: | RE16720.pep: gold |
Preliminary Size: | 567 |
Sequenced Size: | 648 |
Gene | Date | Evidence |
---|---|---|
CG3034 | 2001-12-14 | Blastp of sequenced clone |
CG3034 | 2002-01-01 | Sim4 clustering to Release 2 |
CG3034 | 2003-01-01 | Sim4 clustering to Release 3 |
MED22 | 2008-04-29 | Release 5.5 accounting |
MED22 | 2008-08-15 | Release 5.9 accounting |
MED22 | 2008-12-18 | 5.12 accounting |
648 bp (648 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071113
> RE16720.complete GTGCATATAAAAAACGACGAGAAGCGGGTTTGTCTAAAATAAATTGTTGA ACTAAGTTAAGGTAGAATTAGGACAATGGCCAGCGGATCCAGGACAACCA TTTTGCCCCAGTCGAAGGAGGCGCTTCTGAAGTCCTATAATGCGCGCCTC AAGGACGACGTTCGCAGCATGCTGGAGAATTTTGAAGAAATACTCAAGCT GGCGCGCCGTGAGAGCCACAGCCAGATTTCGAAGACCACGCAGTGCGAAC AGGATGCCCTGGAAATGCAGGTCCGCGCGGCCAACATGGTCCGTGCCGGC GAGTCTCTGATGAAGCTGGTGGCCGACCTAAAACAGTACCTAATCCTCAA CGACTTTCACTCGGTCAACGAGGCCATCACAAACAATTCGCAGCTGTTCA GGAACACACAGAGCGAGTGCGACAAGAAGCTGATGAAACTTAGGGACGAA ATGGCCATGGACTTGTACGACCTGGAGGAGGAGTACTACACCAGCATTTT TAAGTAGCGCTAGGAGGGGAAGGGGTTCACCTTATTTGTGATGAACTGGC TTTGGCCGAACTGTAGAATTTAATAAGAAATCATTACCACATTCACTTGT AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 822535..822846 | 289..600 | 1560 | 100 | Plus |
chrX | 22417052 | chrX | 822130..822313 | 4..187 | 920 | 100 | Plus |
chrX | 22417052 | chrX | 822368..822471 | 186..289 | 505 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 822370..822471 | 188..289 | 99 | -> | Plus |
chrX | 822127..822313 | 1..187 | 99 | -> | Plus |
chrX | 822536..822846 | 290..600 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MED22-RA | 1..432 | 76..507 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MED22-RA | 1..432 | 76..507 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MED22-RA | 1..432 | 76..507 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MED22-RA | 1..432 | 76..507 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MED22-RA | 1..432 | 76..507 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MED22-RA | 5..604 | 1..600 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MED22-RA | 5..604 | 1..600 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MED22-RA | 3..602 | 1..600 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MED22-RA | 5..604 | 1..600 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MED22-RA | 3..602 | 1..600 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 928141..928327 | 1..187 | 99 | -> | Plus |
X | 928384..928485 | 188..289 | 100 | -> | Plus |
X | 928550..928860 | 290..600 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 928141..928327 | 1..187 | 99 | -> | Plus |
X | 928384..928485 | 188..289 | 100 | -> | Plus |
X | 928550..928860 | 290..600 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 928141..928327 | 1..187 | 99 | -> | Plus |
X | 928384..928485 | 188..289 | 100 | -> | Plus |
X | 928550..928860 | 290..600 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 822174..822360 | 1..187 | 99 | -> | Plus |
arm_X | 822417..822518 | 188..289 | 100 | -> | Plus |
arm_X | 822583..822893 | 290..600 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 936648..936958 | 290..600 | 100 | Plus | |
X | 936239..936425 | 1..187 | 99 | -> | Plus |
X | 936482..936583 | 188..289 | 100 | -> | Plus |
Translation from 75 to 506
> RE16720.pep MASGSRTTILPQSKEALLKSYNARLKDDVRSMLENFEEILKLARRESHSQ ISKTTQCEQDALEMQVRAANMVRAGESLMKLVADLKQYLILNDFHSVNEA ITNNSQLFRNTQSECDKKLMKLRDEMAMDLYDLEEEYYTSIFK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22114-PA | 143 | GF22114-PA | 1..143 | 1..143 | 726 | 97.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG12818-PA | 143 | GG12818-PA | 1..143 | 1..143 | 749 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH12360-PA | 143 | GH12360-PA | 1..143 | 1..143 | 712 | 95.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
MED22-PA | 143 | CG3034-PA | 1..143 | 1..143 | 711 | 100 | Plus |
CG32971-PC | 145 | CG32971-PC | 7..130 | 15..138 | 277 | 46.8 | Plus |
CG32971-PB | 145 | CG32971-PB | 7..130 | 15..138 | 277 | 46.8 | Plus |
CG32971-PA | 145 | CG32971-PA | 7..130 | 15..138 | 277 | 46.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI15603-PA | 143 | GI15603-PA | 1..143 | 1..143 | 709 | 94.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL14209-PA | 143 | GL14209-PA | 1..143 | 1..143 | 699 | 93 | Plus |
Dper\GL23473-PA | 143 | GL23473-PA | 1..143 | 1..143 | 696 | 92.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA22402-PA | 143 | GA22402-PA | 1..143 | 1..143 | 699 | 93 | Plus |
Dpse\GA27270-PA | 143 | GA27270-PA | 1..143 | 1..143 | 696 | 92.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM19099-PA | 143 | GM19099-PA | 1..143 | 1..143 | 744 | 99.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD22347-PA | 65 | GD22347-PA | 1..65 | 79..143 | 340 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ15208-PA | 143 | GJ15208-PA | 1..143 | 1..143 | 727 | 97.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK24968-PA | 143 | GK24968-PA | 1..143 | 1..143 | 728 | 97.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE16647-PA | 143 | GE16647-PA | 1..143 | 1..143 | 749 | 100 | Plus |
Translation from 75 to 506
> RE16720.hyp MASGSRTTILPQSKEALLKSYNARLKDDVRSMLENFEEILKLARRESHSQ ISKTTQCEQDALEMQVRAANMVRAGESLMKLVADLKQYLILNDFHSVNEA ITNNSQLFRNTQSECDKKLMKLRDEMAMDLYDLEEEYYTSIFK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
MED22-PA | 143 | CG3034-PA | 1..143 | 1..143 | 711 | 100 | Plus |
CG32971-PC | 145 | CG32971-PC | 7..130 | 15..138 | 277 | 46.8 | Plus |
CG32971-PB | 145 | CG32971-PB | 7..130 | 15..138 | 277 | 46.8 | Plus |
CG32971-PA | 145 | CG32971-PA | 7..130 | 15..138 | 277 | 46.8 | Plus |