Clone RE16764 Report

Search the DGRC for RE16764

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:167
Well:64
Vector:pFlc-1
Associated Gene/Transcripttau-RA
Protein status:RE16764.pep: gold
Sequenced Size:2253

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12881 2002-01-01 Sim4 clustering to Release 2
CG31057 2002-05-09 Blastp of sequenced clone
CG31057 2003-01-01 Sim4 clustering to Release 3
tau 2008-04-29 Release 5.5 accounting
tau 2008-08-15 Release 5.9 accounting
tau 2008-12-18 5.12 accounting

Clone Sequence Records

RE16764.complete Sequence

2253 bp (2253 high quality bases) assembled on 2002-05-09

GenBank Submission: AY102697

> RE16764.complete
AGTTGAAATCGAGATAACAAACCGACAAGCCGACCGAGCGGGAGCTGTCT
CGCTTTTTTTAAAAATTTGCACCAGCAAAAATCCAAATAAATTAGCAGAG
TGCCAGTGAAGTAAGTGAGCGTGAGTGCGCCAAGTCAAAATATAAATATT
GTCATTTACGCCGTTTCAAAATATATTTCCGCGAGCATTTCTCGAATCGA
AAGTGAACCCAAAATATATTATTCCAAGTGAAAAGGACTAGCCCAAAGAT
ACACACACACACACACAGGAAAAATACCGACAGATCTGTAGTCCTTTTCG
AGTTTTCCCGTGAGTGCAACAAATACAGACACACCACACACACACTCGTT
CGACTTTCAATATGGCGGATGTCCTGGAGAAAAGCTCACTGCTGGATGCT
GTGCCACCACTAGGCGACCCCCACCCACCGCTGCCCCACCAGCAGCTGCA
ACAGGAAGCAGCAGCAGCAGCAGCAGCAAATGCCGCACCACCAGCACCAC
CGCAGCAGCAACAACCACCACCCCATCAGCTGCAGCAGCAGCAGCCGCAA
CAACAGCAACTGCAACAGAAGCCAGCAAATGCGAGGGCTAATCAGGATCA
AAAAGAGGGCGACAATGACAGCGGCGTGGATGAGTCCACTCAGGAGAAGG
ATCGCAACGGACCCAACTCGCCCAGTTCGCCCGTAAAAACGCCCACATCG
ACCTCATCGAAGCCGGACAAGTCGGGCACGTCGCGTCCACCGAGTGCCAC
GCCCTCGAACAAGTCAGCCCCCAAATCGCGCAGCGCCTCCAAGAACCGCT
TGCTCCTCAAGACCCCAGAGCCCGAGCCAGTGAAGAAAGTTCCAATGAAC
AAGGTACAAGTCGGACATGCGCCTTCACCCAATCTGAAGGCGGTACGCTC
CAAGATCGGATCCCTGGACAATGCCACCTATAAGCCGGGTGGCGGCCACG
TGAAAATCGAGTCCAAGAAGATCGACATCAAGGCGGCACCGCGCATCGAG
GCCAAGAACGACAAGTACATGCCAAAGGGCGGCGAGAAGAAGATAGTTAC
AACAAAGTTGCAGTGGAACGCCAAGTCCAAAATCGGTTCGCTGGAGAATG
CCGCCCACAAGCCGGGAGGCGGGGACAAGAAGATCGAGACCCTGAAGATG
GACTTCAAGGACAAGGCCAAGCCGAAGGTGGGCTCGACGGCCAATGTGAA
ACATCAGCCGGGTGGCGGAGACATCAAGATCCAAACGCAAAAACTAGAAA
TTAAGGCACAAAGCAAAGTTGGCTCTTTGGATAATGTAAAGCACAAGCCC
GGTGGCGGTGAGAAGAAGATTTTCGATGATAAGGATTATTTGAAAAATGT
TGAACACTCTGTTGCACTGACAACACCACCAACACAGAGTCCACTACCAT
CCATGACGGCTTCTGGCGCTGATGAAAATTTAAATCAACAAAGCTAAATG
CCGAAATGCATGTCGAGCTGTATCTGAAACTGAATCTGAAACTGACTCTT
TCTTTGCAAGCTAAGATCAACAAAAGTGAAATATGAGCAGCTAATTTGAA
ACGTACTATCTAAGCAAAATCCACACAATGCAAAACGAGAGTTATGCGAT
AATTTCCACACACCCAGATAATTCACAAGCCAGTAAATGCGATCAGATCA
ATTCGATAGAGGTGCAAGCACGCAATGAGATGCAGATACTCGTACATCTA
CACAACCACCCCACATAGAAGCGGTATTTGGTATACAATCGAAAGTATAT
TTGACTAGTTGAGCAATGCACTCTTTATCATCAGATAGCAGACATGAATT
ATATATCTCAATGTATTACCAGAACTTCATATATACATACAAATCTATAT
ATATATATATACATATATAAATAAAAGTATCTAAATATTTAAGCAAATTA
TACAAGAAACGTACGAATAAAGTGTATGCTTAGTTGAAAATGTTACCACT
TGACGTCTAAATGTTAAACGACTAAGATAATGCAACCATTTAGATACTTT
TGCGACCAGTGAAAACCAAAAACCAAACCCAACTGAACAGATACGAAACA
AAAAACAAAACGAACCGAACCGAACAGAAGAGATAATAACACGTATAAGC
ATATTTTTACTATTAATTTGTATCTTATTAGTCAAGCGCATCATTCTCAC
GATTTATTTACACCCTGTTACAAAATGTAAGAACAATGGCAAAATTTAAG
CAAATAAACAAACAAAAAAAACGTTTTTTTCATTTACAAAAAAAAAAAAA
AAA

RE16764.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:09:09
Subject Length Description Subject Range Query Range Score Percent Strand
tau-RA 2392 tau-RA 171..2392 1..2220 11055 99.9 Plus
nc_19588.a 464 nc_19588.a 282..464 1388..1570 915 100 Plus
CG34294-RA 911 CG34294-RA 1..158 2084..2241 775 99.3 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:58:41
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 23463552..23464410 2237..1381 4185 99.4 Minus
chr3R 27901430 chr3R 23479120..23479720 605..1 2870 98.7 Minus
chr3R 27901430 chr3R 23468923..23469127 1042..838 1025 100 Minus
chr3R 27901430 chr3R 23469218..23469409 839..648 960 100 Minus
chr3R 27901430 chr3R 23468124..23468311 1228..1041 940 100 Minus
chr3R 27901430 chr3R 23466721..23466881 1387..1227 805 100 Minus
chr3R 27901430 chr3R 23470446..23470492 650..604 235 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:38:12 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:58:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27640639..27641501 2241..1381 4220 99.5 Minus
3R 32079331 3R 27656206..27656810 605..1 3025 100 Minus
3R 32079331 3R 27646041..27646245 1042..838 1025 100 Minus
3R 32079331 3R 27646336..27646527 839..648 960 100 Minus
3R 32079331 3R 27645225..27645412 1228..1041 940 100 Minus
3R 32079331 3R 27643815..27643975 1387..1227 805 100 Minus
3R 32079331 3R 27647564..27647610 650..604 235 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:40:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 27381470..27382332 2241..1381 4230 99.5 Minus
3R 31820162 3R 27397037..27397641 605..1 3025 100 Minus
3R 31820162 3R 27386872..27387076 1042..838 1025 100 Minus
3R 31820162 3R 27387167..27387358 839..648 960 100 Minus
3R 31820162 3R 27386056..27386243 1228..1041 940 100 Minus
3R 31820162 3R 27384646..27384806 1387..1227 805 100 Minus
3R 31820162 3R 27388395..27388441 650..604 235 100 Minus
3R 31820162 3R 27388796..27388861 567..499 185 86.9 Minus
Blast to na_te.dros performed on 2019-03-16 20:58:39 has no hits.

RE16764.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:00:11 Download gff for RE16764.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 23463552..23463709 2080..2237 100 == Minus
chr3R 23463769..23464403 1388..2020 92 <- Minus
chr3R 23466721..23466879 1229..1387 100 <- Minus
chr3R 23468124..23468309 1043..1228 100 <- Minus
chr3R 23468923..23469125 840..1042 100 <- Minus
chr3R 23469218..23469407 650..839 100 <- Minus
chr3R 23470447..23470490 606..649 100 <- Minus
chr3R 23479120..23479163 562..605 100 == Minus
chr3R 23479292..23479720 1..433 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:35:02 Download gff for RE16764.complete
Subject Subject Range Query Range Percent Splice Strand
tau-RA 1..1086 362..1447 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:52:59 Download gff for RE16764.complete
Subject Subject Range Query Range Percent Splice Strand
tau-RA 1..1086 362..1447 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:31:11 Download gff for RE16764.complete
Subject Subject Range Query Range Percent Splice Strand
tau-RA 1..1086 362..1447 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:45:32 Download gff for RE16764.complete
Subject Subject Range Query Range Percent Splice Strand
tau-RA 1..1086 362..1447 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:01:39 Download gff for RE16764.complete
Subject Subject Range Query Range Percent Splice Strand
tau-RA 1..1086 362..1447 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:35:02 Download gff for RE16764.complete
Subject Subject Range Query Range Percent Splice Strand
tau-RA 1..2092 1..2090 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:52:59 Download gff for RE16764.complete
Subject Subject Range Query Range Percent Splice Strand
tau-RA 1..2092 1..2090 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:31:11 Download gff for RE16764.complete
Subject Subject Range Query Range Percent Splice Strand
tau-RA 5..2243 1..2237 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:45:33 Download gff for RE16764.complete
Subject Subject Range Query Range Percent Splice Strand
tau-RA 1..2092 1..2090 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:01:39 Download gff for RE16764.complete
Subject Subject Range Query Range Percent Splice Strand
tau-RA 5..2243 1..2237 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:00:11 Download gff for RE16764.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27646336..27646525 650..839 100 <- Minus
3R 27647565..27647608 606..649 100 <- Minus
3R 27640643..27641494 1388..2237 99 <- Minus
3R 27643815..27643973 1229..1387 100 <- Minus
3R 27645225..27645410 1043..1228 100 <- Minus
3R 27646041..27646243 840..1042 100 <- Minus
3R 27656206..27656810 1..605 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:00:11 Download gff for RE16764.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27646336..27646525 650..839 100 <- Minus
3R 27647565..27647608 606..649 100 <- Minus
3R 27640643..27641494 1388..2237 99 <- Minus
3R 27643815..27643973 1229..1387 100 <- Minus
3R 27645225..27645410 1043..1228 100 <- Minus
3R 27646041..27646243 840..1042 100 <- Minus
3R 27656206..27656810 1..605 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:00:11 Download gff for RE16764.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27646336..27646525 650..839 100 <- Minus
3R 27647565..27647608 606..649 100 <- Minus
3R 27640643..27641494 1388..2237 99 <- Minus
3R 27643815..27643973 1229..1387 100 <- Minus
3R 27645225..27645410 1043..1228 100 <- Minus
3R 27646041..27646243 840..1042 100 <- Minus
3R 27656206..27656810 1..605 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:31:11 Download gff for RE16764.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23466365..23467216 1388..2237 99 <- Minus
arm_3R 23469537..23469695 1229..1387 100 <- Minus
arm_3R 23470947..23471132 1043..1228 100 <- Minus
arm_3R 23471763..23471965 840..1042 100 <- Minus
arm_3R 23472058..23472247 650..839 100 <- Minus
arm_3R 23473287..23473330 606..649 100 <- Minus
arm_3R 23481928..23482532 1..605 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:18:00 Download gff for RE16764.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27386056..27386241 1043..1228 100 <- Minus
3R 27381474..27382325 1388..2237 99 <- Minus
3R 27384646..27384804 1229..1387 100 <- Minus
3R 27397037..27397641 1..605 100   Minus
3R 27386872..27387074 840..1042 100 <- Minus
3R 27387167..27387356 650..839 100 <- Minus
3R 27388396..27388439 606..649 100 <- Minus

RE16764.hyp Sequence

Translation from 361 to 1446

> RE16764.hyp
MADVLEKSSLLDAVPPLGDPHPPLPHQQLQQEAAAAAAANAAPPAPPQQQ
QPPPHQLQQQQPQQQQLQQKPANARANQDQKEGDNDSGVDESTQEKDRNG
PNSPSSPVKTPTSTSSKPDKSGTSRPPSATPSNKSAPKSRSASKNRLLLK
TPEPEPVKKVPMNKVQVGHAPSPNLKAVRSKIGSLDNATYKPGGGHVKIE
SKKIDIKAAPRIEAKNDKYMPKGGEKKIVTTKLQWNAKSKIGSLENAAHK
PGGGDKKIETLKMDFKDKAKPKVGSTANVKHQPGGGDIKIQTQKLEIKAQ
SKVGSLDNVKHKPGGGEKKIFDDKDYLKNVEHSVALTTPPTQSPLPSMTA
SGADENLNQQS*

RE16764.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:45:02
Subject Length Description Subject Range Query Range Score Percent Strand
tau-PB 361 CG45110-PB 1..361 1..361 1877 100 Plus
tau-PA 361 CG45110-PA 1..361 1..361 1877 100 Plus
tau-PM 367 CG45110-PM 1..367 1..361 1860 98.4 Plus
tau-PC 349 CG45110-PC 1..342 1..342 1782 100 Plus
tau-PF 403 CG45110-PF 1..342 1..342 1782 100 Plus

RE16764.pep Sequence

Translation from 361 to 1446

> RE16764.pep
MADVLEKSSLLDAVPPLGDPHPPLPHQQLQQEAAAAAAANAAPPAPPQQQ
QPPPHQLQQQQPQQQQLQQKPANARANQDQKEGDNDSGVDESTQEKDRNG
PNSPSSPVKTPTSTSSKPDKSGTSRPPSATPSNKSAPKSRSASKNRLLLK
TPEPEPVKKVPMNKVQVGHAPSPNLKAVRSKIGSLDNATYKPGGGHVKIE
SKKIDIKAAPRIEAKNDKYMPKGGEKKIVTTKLQWNAKSKIGSLENAAHK
PGGGDKKIETLKMDFKDKAKPKVGSTANVKHQPGGGDIKIQTQKLEIKAQ
SKVGSLDNVKHKPGGGEKKIFDDKDYLKNVEHSVALTTPPTQSPLPSMTA
SGADENLNQQS*

RE16764.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:08:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18699-PA 351 GF18699-PA 1..351 1..361 1473 85 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:08:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12102-PA 354 GG12102-PA 1..354 1..361 1752 97 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 00:08:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21637-PA 367 GH21637-PA 1..367 1..361 1369 80.7 Plus
Dgri\GH19669-PA 264 GH19669-PA 48..245 94..290 904 90.4 Plus
Dgri\GH19669-PA 264 GH19669-PA 132..213 237..320 206 54.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:19:28
Subject Length Description Subject Range Query Range Score Percent Strand
tau-PB 361 CG45110-PB 1..361 1..361 1877 100 Plus
tau-PA 361 CG45110-PA 1..361 1..361 1877 100 Plus
tau-PM 367 CG45110-PM 1..367 1..361 1860 98.4 Plus
tau-PN 375 CG45110-PN 1..345 1..345 1783 99.4 Plus
tau-PF 403 CG45110-PF 1..342 1..342 1782 100 Plus
tau-PC 349 CG45110-PC 1..342 1..342 1782 100 Plus
tau-PJ 308 CG45110-PJ 1..308 1..361 1539 85.3 Plus
tau-PI 350 CG45110-PI 1..289 1..289 1508 100 Plus
tau-PG 717 CG45110-PG 316..717 15..361 1479 76.8 Plus
tau-PL 278 CG45110-PL 8..278 91..361 1376 98.2 Plus
tau-PK 278 CG45110-PK 8..278 91..361 1376 98.2 Plus
tau-PH 288 CG45110-PH 1..227 1..227 1182 100 Plus
tau-PE 93 CG45110-PE 1..86 1..86 431 95.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:08:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10747-PA 359 GI10747-PA 78..359 82..361 1234 92.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:08:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13771-PA 686 GL13771-PA 407..686 82..361 1303 94.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:08:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15971-PA 361 GA15971-PA 1..361 1..361 1380 84.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:08:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16331-PA 359 GM16331-PA 1..359 1..361 1822 99.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:08:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10689-PA 367 GJ10689-PA 1..367 1..361 1378 84.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:09:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11325-PA 357 GK11325-PA 1..357 1..361 1352 79.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:09:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10550-PA 362 GE10550-PA 1..362 1..361 1806 98.9 Plus