BDGP Sequence Production Resources |
Search the DGRC for RE16861
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 168 |
Well: | 61 |
Vector: | pFlc-1 |
Associated Gene/Transcript | tank-RA |
Protein status: | RE16861.pep: gold |
Preliminary Size: | 1494 |
Sequenced Size: | 2093 |
Gene | Date | Evidence |
---|---|---|
CG15626 | 2001-12-14 | Blastp of sequenced clone |
CG15626 | 2002-01-01 | Sim4 clustering to Release 2 |
CG15626 | 2003-01-01 | Sim4 clustering to Release 3 |
CG15626 | 2008-04-29 | Release 5.5 accounting |
CG15626 | 2008-08-15 | Release 5.9 accounting |
CG15626 | 2008-12-18 | 5.12 accounting |
2093 bp (2093 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071115
> RE16861.complete AAAAGCGACCGCAGCGCATCAGGTGGCAACCGTGTGTTCCTACACCAAGC AAAACAACTATTTTATTATTAAATTCAGCACAAAGTTCAATGATTATTAG GTCCTCTGCACACTCACTATTCGATCAGCAAGCACTGGCACAGCGATAAG TATGAACTAAGGTCTGTCCACCCGAGATGGCGGCGATAAAGAACATCACC CTGGGCATTCTGTACGGCCTGTGGGACAGCATACGTGGCATGACACTGGT CCTGCACATCGACGACGAGGTGAACCGCCAGAATGCCGAGCAGGAGCACC GCCAACAGCTGCGTCGCACCGACAAGGATCGTTACGAACGCGCCAGGAGA TCACCGTCACCAGTGCCCAGTTCCGCGGCTGCCATGATTCGGGAGGAGTA TGCCAAGCAGGCGGAGGAGAACGCCGACGAGCGGACGCTAGAGAAGATCC TGGGCAAGAAGCCAGCCGCCCAGGATCAACACCCGCAGGGGGAGAAGAAG ATCGCCAAGAAGCTGTTCAAGTGCTGCATGCTCAATGGCGGTTTCACCTG GCTGAGCATCGTCCTGTTCGAGAACGCTCTGCTGCCCACGCTCAAATTCT GCCTTACCATCTTCTATGGAGCCCATTCCGAGACCCTGCCGGTGGTTTGG GGCTGGCTGCATCCCATACTGTCCCTGCTCTTCGGCATGATGTGGGTGCT GCCCATATTCATGCTCTCCAAGATTGTGAGCTCTCTGTGGTTCGCGGACA TAGCCAATGCCGCGTATCGCGTGAGAAAGGGTCGCCCGCAGCTAATCCCT GGAATTAGCAAACTGGTGGCCGACTTCCTATTCAGCATGGTGGTGCAAAT GCTGTTCCTGGTACAGAGCATGCTGGTTAACCTAGTGCCTGTGAAATATG TGGGCTCCTCGCTGTGCTTCGTGCATCTGTGCCTGCTCTACTCACTGTAC TCCTTCGAGTACAAGTGGTTCAACATGGGCTGGGAGCTACATAGACGACT CACGTACATTGAAAAGAACTGGCCCTATTTCTTCGGCTTCGGAATACCGC TCACCGTGCTGACAAATCTGTCCAGCTCGGTGATCGTCAGTAGCTGCATC TTCTCCATCTTTTTTCCCCTGTTCATACTCAGCGGCAATGAGGCAAAACC CATTGTGGACACCACTGAGGTCTCCCTGCGTCTCTTCTCGCCGGTGGTCT TCATATCGAACCTCTGCTTCGGCGGCAATCCGTGGAGCAAGGCCAATCGA CTGAGTGCCATGCAGCGGCAGCAGTATGAGCTGCAGCAGCGACAGCGTTT GCTCCAGCGGGACGAGCAACTGCTCAAGCAGCGCAAGCAGCAATATGTGC AGCAGCAACGGCTGCAACAGGAGCAGCTAATGCGACGTGATCGCTCGCAT TCGCGATCACAGACACCGCAGCTGGGACATCCGCATCGCTACGCCCAGGC GCCCGTTTTCGATGCGGGTCGGGTGCGCGATTCCTCCGCCTCGTCAACGC ACAGCTCCAATGCGCCGAGCATTAATAGCCATCGGCCGCCGCCTTATTAC GGCAGCTCGCTGCGCGGAGCTGCGCCTTTGGTGCCCACTCCTGTGCCCGG TGCACCGAGAGCTCCGCTAACCCCGCCCGTGATACGCCAGGAGTCGGGGC CCGATGACTGGAACTTGTGAGATTTATGCTTATACACGCAACGTAGGCTT TAGCTATATATAATTCGATCTGTGTAATCTACGTATCATCTACCTATCTA ACCATCGTGAACTGTGTAAGTTAAAGATAACTCTAGGTCTACGCATAATG ACAATGTTCGCTAGTCGACAACGCCACCGCCACCACCACCACCAACACAA CGCCCTATTCGGAATGGGCATGACTATATATATATAGACTATAGAGTGGC TATATCTGAAATGCGGCTCGCGCAACTGCTGCATAATCGTTTACATGTTT ATTTTAGTCGTCGTTTTTCTCTTTAATTTTTGCTCGTAGGGTGATATGCT CTACACTAGAAATTACGTCGGGCGTAAAGTTCGTTAAATGTATAATTAAT CAAAAATAAAATTAATTTTGTACTTCCAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 4834455..4835368 | 2075..1162 | 4525 | 99.7 | Minus |
chr2L | 23010047 | chr2L | 4835603..4836278 | 1165..490 | 3365 | 99.9 | Minus |
chr2L | 23010047 | chr2L | 4836354..4836655 | 491..190 | 1495 | 99.7 | Minus |
chr2L | 23010047 | chr2L | 4836964..4837116 | 154..2 | 750 | 99.3 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 4835335..4836248 | 2075..1162 | 4555 | 99.9 | Minus |
2L | 23513712 | 2L | 4836483..4837158 | 1165..490 | 3380 | 100 | Minus |
2L | 23513712 | 2L | 4837234..4837535 | 491..190 | 1510 | 100 | Minus |
2L | 23513712 | 2L | 4837844..4837996 | 154..2 | 750 | 99.3 | Minus |
2L | 23513712 | 2L | 4837602..4837639 | 191..154 | 190 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 4835335..4836248 | 2075..1162 | 4555 | 99.8 | Minus |
2L | 23513712 | 2L | 4836483..4837158 | 1165..490 | 3380 | 100 | Minus |
2L | 23513712 | 2L | 4837234..4837535 | 491..190 | 1510 | 100 | Minus |
2L | 23513712 | 2L | 4837844..4837996 | 154..2 | 750 | 99.3 | Minus |
2L | 23513712 | 2L | 4837602..4837639 | 191..154 | 190 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2499 | 1263..1437 | 245 | 60 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6746..6860 | 1263..1377 | 224 | 66.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6841 | 1262..1379 | 221 | 65.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6653..6966 | 1135..1462 | 213 | 56.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6833 | 1269..1383 | 208 | 66.1 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1029..1163 | 1232..1374 | 173 | 62.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6680..6839 | 1293..1452 | 169 | 57.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6794 | 1312..1386 | 168 | 69.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2369..2523 | 1262..1417 | 166 | 59.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6812 | 1305..1383 | 163 | 69.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6814..6929 | 1262..1371 | 152 | 62.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2394 | 1301..1386 | 149 | 66.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2417..2532 | 1262..1377 | 139 | 57.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1515..1590 | 1311..1380 | 133 | 67.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2760..2883 | 1260..1386 | 133 | 57.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2602..2669 | 1315..1382 | 115 | 63.2 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 4834491..4835152 | 1378..2039 | 100 | == | Minus |
chr2L | 4835269..4835364 | 1166..1261 | 100 | <- | Minus |
chr2L | 4835603..4836277 | 491..1165 | 99 | <- | Minus |
chr2L | 4836355..4836653 | 192..490 | 99 | <- | Minus |
chr2L | 4836722..4836759 | 154..191 | 94 | <- | Minus |
chr2L | 4836965..4837116 | 1..153 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15626-RA | 1..1494 | 177..1670 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15626-RA | 1..1494 | 177..1670 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15626-RB | 1..1494 | 177..1670 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15626-RA | 1..1494 | 177..1670 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tank-RB | 1..1494 | 177..1670 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15626-RA | 1..2076 | 2..2077 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15626-RA | 1..2076 | 2..2077 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15626-RA | 4..2077 | 1..2075 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15626-RA | 1..2076 | 2..2077 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tank-RA | 4..2077 | 1..2075 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 4837602..4837639 | 154..191 | 100 | <- | Minus |
2L | 4837845..4837996 | 1..153 | 99 | Minus | |
2L | 4835333..4836244 | 1166..2077 | 99 | <- | Minus |
2L | 4836483..4837157 | 491..1165 | 100 | <- | Minus |
2L | 4837235..4837533 | 192..490 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 4837602..4837639 | 154..191 | 100 | <- | Minus |
2L | 4837845..4837996 | 1..153 | 99 | Minus | |
2L | 4835333..4836244 | 1166..2077 | 99 | <- | Minus |
2L | 4836483..4837157 | 491..1165 | 100 | <- | Minus |
2L | 4837235..4837533 | 192..490 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 4837602..4837639 | 154..191 | 100 | <- | Minus |
2L | 4837845..4837996 | 1..153 | 99 | Minus | |
2L | 4835333..4836244 | 1166..2077 | 99 | <- | Minus |
2L | 4836483..4837157 | 491..1165 | 100 | <- | Minus |
2L | 4837235..4837533 | 192..490 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 4837602..4837639 | 154..191 | 100 | <- | Minus |
arm_2L | 4837845..4837996 | 1..153 | 99 | Minus | |
arm_2L | 4835333..4836244 | 1166..2077 | 99 | <- | Minus |
arm_2L | 4836483..4837157 | 491..1165 | 100 | <- | Minus |
arm_2L | 4837235..4837533 | 192..490 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 4835333..4836244 | 1166..2077 | 99 | <- | Minus |
2L | 4836483..4837157 | 491..1165 | 100 | <- | Minus |
2L | 4837235..4837533 | 192..490 | 100 | <- | Minus |
2L | 4837602..4837639 | 154..191 | 100 | <- | Minus |
2L | 4837845..4837996 | 1..153 | 99 | Minus |
Translation from 176 to 1669
> RE16861.pep MAAIKNITLGILYGLWDSIRGMTLVLHIDDEVNRQNAEQEHRQQLRRTDK DRYERARRSPSPVPSSAAAMIREEYAKQAEENADERTLEKILGKKPAAQD QHPQGEKKIAKKLFKCCMLNGGFTWLSIVLFENALLPTLKFCLTIFYGAH SETLPVVWGWLHPILSLLFGMMWVLPIFMLSKIVSSLWFADIANAAYRVR KGRPQLIPGISKLVADFLFSMVVQMLFLVQSMLVNLVPVKYVGSSLCFVH LCLLYSLYSFEYKWFNMGWELHRRLTYIEKNWPYFFGFGIPLTVLTNLSS SVIVSSCIFSIFFPLFILSGNEAKPIVDTTEVSLRLFSPVVFISNLCFGG NPWSKANRLSAMQRQQYELQQRQRLLQRDEQLLKQRKQQYVQQQRLQQEQ LMRRDRSHSRSQTPQLGHPHRYAQAPVFDAGRVRDSSASSTHSSNAPSIN SHRPPPYYGSSLRGAAPLVPTPVPGAPRAPLTPPVIRQESGPDDWNL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF14415-PA | 490 | GF14415-PA | 1..490 | 1..497 | 2151 | 92.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG24349-PA | 497 | GG24349-PA | 1..497 | 1..497 | 2628 | 98.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH13666-PA | 495 | GH13666-PA | 1..495 | 1..497 | 1902 | 77.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
tank-PA | 497 | CG15626-PA | 1..497 | 1..497 | 2607 | 100 | Plus |
tank-PB | 497 | CG15626-PB | 1..497 | 1..497 | 2607 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI21031-PA | 485 | GI21031-PA | 1..485 | 1..497 | 1967 | 80.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL18749-PA | 497 | GL18749-PA | 1..497 | 1..497 | 2157 | 89.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA13856-PA | 497 | GA13856-PA | 1..497 | 1..497 | 2157 | 89.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM18069-PA | 497 | GM18069-PA | 1..497 | 1..497 | 2634 | 99 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD22687-PA | 497 | GD22687-PA | 1..497 | 1..497 | 2642 | 99.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ16132-PA | 490 | GJ16132-PA | 1..490 | 1..497 | 1917 | 80.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK24596-PA | 494 | GK24596-PA | 1..494 | 1..497 | 2099 | 85.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE14670-PA | 497 | GE14670-PA | 1..497 | 1..497 | 2637 | 99.2 | Plus |
Translation from 176 to 1669
> RE16861.hyp MAAIKNITLGILYGLWDSIRGMTLVLHIDDEVNRQNAEQEHRQQLRRTDK DRYERARRSPSPVPSSAAAMIREEYAKQAEENADERTLEKILGKKPAAQD QHPQGEKKIAKKLFKCCMLNGGFTWLSIVLFENALLPTLKFCLTIFYGAH SETLPVVWGWLHPILSLLFGMMWVLPIFMLSKIVSSLWFADIANAAYRVR KGRPQLIPGISKLVADFLFSMVVQMLFLVQSMLVNLVPVKYVGSSLCFVH LCLLYSLYSFEYKWFNMGWELHRRLTYIEKNWPYFFGFGIPLTVLTNLSS SVIVSSCIFSIFFPLFILSGNEAKPIVDTTEVSLRLFSPVVFISNLCFGG NPWSKANRLSAMQRQQYELQQRQRLLQRDEQLLKQRKQQYVQQQRLQQEQ LMRRDRSHSRSQTPQLGHPHRYAQAPVFDAGRVRDSSASSTHSSNAPSIN SHRPPPYYGSSLRGAAPLVPTPVPGAPRAPLTPPVIRQESGPDDWNL*