Clone RE16861 Report

Search the DGRC for RE16861

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:168
Well:61
Vector:pFlc-1
Associated Gene/Transcripttank-RA
Protein status:RE16861.pep: gold
Preliminary Size:1494
Sequenced Size:2093

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15626 2001-12-14 Blastp of sequenced clone
CG15626 2002-01-01 Sim4 clustering to Release 2
CG15626 2003-01-01 Sim4 clustering to Release 3
CG15626 2008-04-29 Release 5.5 accounting
CG15626 2008-08-15 Release 5.9 accounting
CG15626 2008-12-18 5.12 accounting

Clone Sequence Records

RE16861.complete Sequence

2093 bp (2093 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071115

> RE16861.complete
AAAAGCGACCGCAGCGCATCAGGTGGCAACCGTGTGTTCCTACACCAAGC
AAAACAACTATTTTATTATTAAATTCAGCACAAAGTTCAATGATTATTAG
GTCCTCTGCACACTCACTATTCGATCAGCAAGCACTGGCACAGCGATAAG
TATGAACTAAGGTCTGTCCACCCGAGATGGCGGCGATAAAGAACATCACC
CTGGGCATTCTGTACGGCCTGTGGGACAGCATACGTGGCATGACACTGGT
CCTGCACATCGACGACGAGGTGAACCGCCAGAATGCCGAGCAGGAGCACC
GCCAACAGCTGCGTCGCACCGACAAGGATCGTTACGAACGCGCCAGGAGA
TCACCGTCACCAGTGCCCAGTTCCGCGGCTGCCATGATTCGGGAGGAGTA
TGCCAAGCAGGCGGAGGAGAACGCCGACGAGCGGACGCTAGAGAAGATCC
TGGGCAAGAAGCCAGCCGCCCAGGATCAACACCCGCAGGGGGAGAAGAAG
ATCGCCAAGAAGCTGTTCAAGTGCTGCATGCTCAATGGCGGTTTCACCTG
GCTGAGCATCGTCCTGTTCGAGAACGCTCTGCTGCCCACGCTCAAATTCT
GCCTTACCATCTTCTATGGAGCCCATTCCGAGACCCTGCCGGTGGTTTGG
GGCTGGCTGCATCCCATACTGTCCCTGCTCTTCGGCATGATGTGGGTGCT
GCCCATATTCATGCTCTCCAAGATTGTGAGCTCTCTGTGGTTCGCGGACA
TAGCCAATGCCGCGTATCGCGTGAGAAAGGGTCGCCCGCAGCTAATCCCT
GGAATTAGCAAACTGGTGGCCGACTTCCTATTCAGCATGGTGGTGCAAAT
GCTGTTCCTGGTACAGAGCATGCTGGTTAACCTAGTGCCTGTGAAATATG
TGGGCTCCTCGCTGTGCTTCGTGCATCTGTGCCTGCTCTACTCACTGTAC
TCCTTCGAGTACAAGTGGTTCAACATGGGCTGGGAGCTACATAGACGACT
CACGTACATTGAAAAGAACTGGCCCTATTTCTTCGGCTTCGGAATACCGC
TCACCGTGCTGACAAATCTGTCCAGCTCGGTGATCGTCAGTAGCTGCATC
TTCTCCATCTTTTTTCCCCTGTTCATACTCAGCGGCAATGAGGCAAAACC
CATTGTGGACACCACTGAGGTCTCCCTGCGTCTCTTCTCGCCGGTGGTCT
TCATATCGAACCTCTGCTTCGGCGGCAATCCGTGGAGCAAGGCCAATCGA
CTGAGTGCCATGCAGCGGCAGCAGTATGAGCTGCAGCAGCGACAGCGTTT
GCTCCAGCGGGACGAGCAACTGCTCAAGCAGCGCAAGCAGCAATATGTGC
AGCAGCAACGGCTGCAACAGGAGCAGCTAATGCGACGTGATCGCTCGCAT
TCGCGATCACAGACACCGCAGCTGGGACATCCGCATCGCTACGCCCAGGC
GCCCGTTTTCGATGCGGGTCGGGTGCGCGATTCCTCCGCCTCGTCAACGC
ACAGCTCCAATGCGCCGAGCATTAATAGCCATCGGCCGCCGCCTTATTAC
GGCAGCTCGCTGCGCGGAGCTGCGCCTTTGGTGCCCACTCCTGTGCCCGG
TGCACCGAGAGCTCCGCTAACCCCGCCCGTGATACGCCAGGAGTCGGGGC
CCGATGACTGGAACTTGTGAGATTTATGCTTATACACGCAACGTAGGCTT
TAGCTATATATAATTCGATCTGTGTAATCTACGTATCATCTACCTATCTA
ACCATCGTGAACTGTGTAAGTTAAAGATAACTCTAGGTCTACGCATAATG
ACAATGTTCGCTAGTCGACAACGCCACCGCCACCACCACCACCAACACAA
CGCCCTATTCGGAATGGGCATGACTATATATATATAGACTATAGAGTGGC
TATATCTGAAATGCGGCTCGCGCAACTGCTGCATAATCGTTTACATGTTT
ATTTTAGTCGTCGTTTTTCTCTTTAATTTTTGCTCGTAGGGTGATATGCT
CTACACTAGAAATTACGTCGGGCGTAAAGTTCGTTAAATGTATAATTAAT
CAAAAATAAAATTAATTTTGTACTTCCAAAAAAAAAAAAAAAA

RE16861.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:42:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG15626-RA 2090 CG15626-RA 4..2077 2..2075 10355 99.9 Plus
CG15626-RB 2248 CG15626-RB 314..2235 154..2075 9610 100 Plus
CG15626-RB 2248 CG15626-RB 1..109 46..154 545 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:10:11
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 4834455..4835368 2075..1162 4525 99.7 Minus
chr2L 23010047 chr2L 4835603..4836278 1165..490 3365 99.9 Minus
chr2L 23010047 chr2L 4836354..4836655 491..190 1495 99.7 Minus
chr2L 23010047 chr2L 4836964..4837116 154..2 750 99.3 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:38:16 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:10:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4835335..4836248 2075..1162 4555 99.9 Minus
2L 23513712 2L 4836483..4837158 1165..490 3380 100 Minus
2L 23513712 2L 4837234..4837535 491..190 1510 100 Minus
2L 23513712 2L 4837844..4837996 154..2 750 99.3 Minus
2L 23513712 2L 4837602..4837639 191..154 190 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:09:32
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4835335..4836248 2075..1162 4555 99.8 Minus
2L 23513712 2L 4836483..4837158 1165..490 3380 100 Minus
2L 23513712 2L 4837234..4837535 491..190 1510 100 Minus
2L 23513712 2L 4837844..4837996 154..2 750 99.3 Minus
2L 23513712 2L 4837602..4837639 191..154 190 100 Minus
Blast to na_te.dros performed 2019-03-15 20:10:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2325..2499 1263..1437 245 60 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6746..6860 1263..1377 224 66.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6724..6841 1262..1379 221 65.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6653..6966 1135..1462 213 56.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6833 1269..1383 208 66.1 Plus
roo 9092 roo DM_ROO 9092bp 1029..1163 1232..1374 173 62.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6680..6839 1293..1452 169 57.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6794 1312..1386 168 69.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2369..2523 1262..1417 166 59.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6737..6812 1305..1383 163 69.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6814..6929 1262..1371 152 62.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2394 1301..1386 149 66.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2417..2532 1262..1377 139 57.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1515..1590 1311..1380 133 67.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2760..2883 1260..1386 133 57.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2602..2669 1315..1382 115 63.2 Plus

RE16861.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:10:58 Download gff for RE16861.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 4834491..4835152 1378..2039 100 == Minus
chr2L 4835269..4835364 1166..1261 100 <- Minus
chr2L 4835603..4836277 491..1165 99 <- Minus
chr2L 4836355..4836653 192..490 99 <- Minus
chr2L 4836722..4836759 154..191 94 <- Minus
chr2L 4836965..4837116 1..153 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:58:23 Download gff for RE16861.complete
Subject Subject Range Query Range Percent Splice Strand
CG15626-RA 1..1494 177..1670 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:08:23 Download gff for RE16861.complete
Subject Subject Range Query Range Percent Splice Strand
CG15626-RA 1..1494 177..1670 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:07:29 Download gff for RE16861.complete
Subject Subject Range Query Range Percent Splice Strand
CG15626-RB 1..1494 177..1670 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:32:40 Download gff for RE16861.complete
Subject Subject Range Query Range Percent Splice Strand
CG15626-RA 1..1494 177..1670 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:17:03 Download gff for RE16861.complete
Subject Subject Range Query Range Percent Splice Strand
tank-RB 1..1494 177..1670 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:37:22 Download gff for RE16861.complete
Subject Subject Range Query Range Percent Splice Strand
CG15626-RA 1..2076 2..2077 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:08:23 Download gff for RE16861.complete
Subject Subject Range Query Range Percent Splice Strand
CG15626-RA 1..2076 2..2077 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:07:29 Download gff for RE16861.complete
Subject Subject Range Query Range Percent Splice Strand
CG15626-RA 4..2077 1..2075 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:32:40 Download gff for RE16861.complete
Subject Subject Range Query Range Percent Splice Strand
CG15626-RA 1..2076 2..2077 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:17:03 Download gff for RE16861.complete
Subject Subject Range Query Range Percent Splice Strand
tank-RA 4..2077 1..2075 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:10:58 Download gff for RE16861.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4837602..4837639 154..191 100 <- Minus
2L 4837845..4837996 1..153 99   Minus
2L 4835333..4836244 1166..2077 99 <- Minus
2L 4836483..4837157 491..1165 100 <- Minus
2L 4837235..4837533 192..490 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:10:58 Download gff for RE16861.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4837602..4837639 154..191 100 <- Minus
2L 4837845..4837996 1..153 99   Minus
2L 4835333..4836244 1166..2077 99 <- Minus
2L 4836483..4837157 491..1165 100 <- Minus
2L 4837235..4837533 192..490 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:10:58 Download gff for RE16861.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4837602..4837639 154..191 100 <- Minus
2L 4837845..4837996 1..153 99   Minus
2L 4835333..4836244 1166..2077 99 <- Minus
2L 4836483..4837157 491..1165 100 <- Minus
2L 4837235..4837533 192..490 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:07:29 Download gff for RE16861.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4837602..4837639 154..191 100 <- Minus
arm_2L 4837845..4837996 1..153 99   Minus
arm_2L 4835333..4836244 1166..2077 99 <- Minus
arm_2L 4836483..4837157 491..1165 100 <- Minus
arm_2L 4837235..4837533 192..490 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:09:35 Download gff for RE16861.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4835333..4836244 1166..2077 99 <- Minus
2L 4836483..4837157 491..1165 100 <- Minus
2L 4837235..4837533 192..490 100 <- Minus
2L 4837602..4837639 154..191 100 <- Minus
2L 4837845..4837996 1..153 99   Minus

RE16861.pep Sequence

Translation from 176 to 1669

> RE16861.pep
MAAIKNITLGILYGLWDSIRGMTLVLHIDDEVNRQNAEQEHRQQLRRTDK
DRYERARRSPSPVPSSAAAMIREEYAKQAEENADERTLEKILGKKPAAQD
QHPQGEKKIAKKLFKCCMLNGGFTWLSIVLFENALLPTLKFCLTIFYGAH
SETLPVVWGWLHPILSLLFGMMWVLPIFMLSKIVSSLWFADIANAAYRVR
KGRPQLIPGISKLVADFLFSMVVQMLFLVQSMLVNLVPVKYVGSSLCFVH
LCLLYSLYSFEYKWFNMGWELHRRLTYIEKNWPYFFGFGIPLTVLTNLSS
SVIVSSCIFSIFFPLFILSGNEAKPIVDTTEVSLRLFSPVVFISNLCFGG
NPWSKANRLSAMQRQQYELQQRQRLLQRDEQLLKQRKQQYVQQQRLQQEQ
LMRRDRSHSRSQTPQLGHPHRYAQAPVFDAGRVRDSSASSTHSSNAPSIN
SHRPPPYYGSSLRGAAPLVPTPVPGAPRAPLTPPVIRQESGPDDWNL*

RE16861.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:02:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14415-PA 490 GF14415-PA 1..490 1..497 2151 92.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:02:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24349-PA 497 GG24349-PA 1..497 1..497 2628 98.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:02:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13666-PA 495 GH13666-PA 1..495 1..497 1902 77.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:54:20
Subject Length Description Subject Range Query Range Score Percent Strand
tank-PA 497 CG15626-PA 1..497 1..497 2607 100 Plus
tank-PB 497 CG15626-PB 1..497 1..497 2607 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:02:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21031-PA 485 GI21031-PA 1..485 1..497 1967 80.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:02:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18749-PA 497 GL18749-PA 1..497 1..497 2157 89.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:02:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13856-PA 497 GA13856-PA 1..497 1..497 2157 89.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:02:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18069-PA 497 GM18069-PA 1..497 1..497 2634 99 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:02:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22687-PA 497 GD22687-PA 1..497 1..497 2642 99.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:02:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16132-PA 490 GJ16132-PA 1..490 1..497 1917 80.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:02:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24596-PA 494 GK24596-PA 1..494 1..497 2099 85.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:02:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14670-PA 497 GE14670-PA 1..497 1..497 2637 99.2 Plus

RE16861.hyp Sequence

Translation from 176 to 1669

> RE16861.hyp
MAAIKNITLGILYGLWDSIRGMTLVLHIDDEVNRQNAEQEHRQQLRRTDK
DRYERARRSPSPVPSSAAAMIREEYAKQAEENADERTLEKILGKKPAAQD
QHPQGEKKIAKKLFKCCMLNGGFTWLSIVLFENALLPTLKFCLTIFYGAH
SETLPVVWGWLHPILSLLFGMMWVLPIFMLSKIVSSLWFADIANAAYRVR
KGRPQLIPGISKLVADFLFSMVVQMLFLVQSMLVNLVPVKYVGSSLCFVH
LCLLYSLYSFEYKWFNMGWELHRRLTYIEKNWPYFFGFGIPLTVLTNLSS
SVIVSSCIFSIFFPLFILSGNEAKPIVDTTEVSLRLFSPVVFISNLCFGG
NPWSKANRLSAMQRQQYELQQRQRLLQRDEQLLKQRKQQYVQQQRLQQEQ
LMRRDRSHSRSQTPQLGHPHRYAQAPVFDAGRVRDSSASSTHSSNAPSIN
SHRPPPYYGSSLRGAAPLVPTPVPGAPRAPLTPPVIRQESGPDDWNL*

RE16861.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:28:38
Subject Length Description Subject Range Query Range Score Percent Strand
tank-PA 497 CG15626-PA 1..497 1..497 2607 100 Plus
tank-PB 497 CG15626-PB 1..497 1..497 2607 100 Plus