BDGP Sequence Production Resources |
Search the DGRC for RE17056
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 170 |
Well: | 56 |
Vector: | pFlc-1 |
Associated Gene/Transcript | PDCD-5-RA |
Protein status: | RE17056.pep: gold |
Preliminary Size: | 402 |
Sequenced Size: | 660 |
Gene | Date | Evidence |
---|---|---|
CG13072 | 2001-12-14 | Blastp of sequenced clone |
CG13072 | 2002-01-01 | Sim4 clustering to Release 2 |
CG13072 | 2003-01-01 | Sim4 clustering to Release 3 |
PDCD-5 | 2008-04-29 | Release 5.5 accounting |
PDCD-5 | 2008-08-15 | Release 5.9 accounting |
PDCD-5 | 2008-12-18 | 5.12 accounting |
660 bp (660 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071119
> RE17056.complete AATTGCAAGGTCACACTGTTCAATCGCACACTTTTTTTGCTACAAAGAGC GTGATTTATTTTTATAGAAGCAAAAAAAGCAATAATTACTTAATTTACTG CCATAAATATACTGAGAATAAGAACCCAGAATGTCGGATAGTGATTTGGA TGCCTTACGCGCGCAGCGCATGTCCCAAATGCAGTCGCAATTCGGCGGCG GCAATGATGCGGAAAAGCAACAAGCCCAGCAGGAGCAGATGCGCGCCCAG GAGGAAATGAAGCACTCGATATTATCCCAAGTTCTGGACCAGCAGGCCAG GGCACGACTTAATACCCTCAAAGTCAGCAAGCCGGAGAAGGCGCAAATGT TCGAGAACATGGTCATCCGCATGGCCCAGATGGGTCAGGTGCGTGGAAAA CTTGATGACGCCCAGTTCGTCAGCATCCTCGAAAGCGTCAATGCTCAGAT GCCGCAGAGCAAGTCCTCCGTGAAATACGATCGGCGGCGGGCGGCCATCG ATAGCGACGACGACGAGGATTACGGCTGCTGATTCGTCCGAAATTCCGCC CAACATCTAATTTAAGTTATGCCCGCTCCTCACATCCGCTAAATCATGTT TATTACTTTTACTAACTTAAAACGAGAAACAAAACTAGATGCCCAAAAAA AAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
PDCD-5-RA | 723 | PDCD-5-RA | 4..650 | 1..647 | 3220 | 99.8 | Plus |
PDCD-5.a | 520 | PDCD-5.a | 70..520 | 194..644 | 2255 | 100 | Plus |
PDCD-5.b | 629 | PDCD-5.b | 309..629 | 324..644 | 1605 | 100 | Plus |
PDCD-5.b | 629 | PDCD-5.b | 1..309 | 1..309 | 1530 | 99.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 16220765..16221100 | 644..309 | 1680 | 100 | Minus |
chr3L | 24539361 | chr3L | 16221523..16221716 | 194..1 | 955 | 99.5 | Minus |
chr3L | 24539361 | chr3L | 16221158..16221272 | 308..194 | 575 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 16231078..16231416 | 647..309 | 1695 | 100 | Minus |
3L | 28110227 | 3L | 16231839..16232032 | 194..1 | 955 | 99.5 | Minus |
3L | 28110227 | 3L | 16231474..16231588 | 308..194 | 575 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 16224178..16224516 | 647..309 | 1695 | 100 | Minus |
3L | 28103327 | 3L | 16224939..16225132 | 194..1 | 955 | 99.4 | Minus |
3L | 28103327 | 3L | 16224574..16224688 | 308..194 | 575 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 16221158..16221272 | 194..308 | 100 | <- | Minus |
chr3L | 16221524..16221716 | 1..193 | 99 | Minus | |
chr3L | 16220765..16221100 | 309..644 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
PDCD-5-RA | 1..402 | 131..532 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
PDCD-5-RA | 1..402 | 131..532 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
PDCD-5-RA | 1..402 | 131..532 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
PDCD-5-RA | 1..402 | 131..532 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
PDCD-5-RA | 1..402 | 131..532 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
PDCD-5-RA | 1..644 | 1..644 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
PDCD-5-RA | 1..644 | 1..644 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
PDCD-5-RA | 7..650 | 1..644 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
PDCD-5-RA | 1..644 | 1..644 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
PDCD-5-RA | 7..650 | 1..644 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 16231081..16231416 | 309..644 | 100 | <- | Minus |
3L | 16231474..16231588 | 194..308 | 100 | <- | Minus |
3L | 16231840..16232032 | 1..193 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 16231081..16231416 | 309..644 | 100 | <- | Minus |
3L | 16231474..16231588 | 194..308 | 100 | <- | Minus |
3L | 16231840..16232032 | 1..193 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 16231081..16231416 | 309..644 | 100 | <- | Minus |
3L | 16231474..16231588 | 194..308 | 100 | <- | Minus |
3L | 16231840..16232032 | 1..193 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 16224181..16224516 | 309..644 | 100 | <- | Minus |
arm_3L | 16224574..16224688 | 194..308 | 100 | <- | Minus |
arm_3L | 16224940..16225132 | 1..193 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 16224181..16224516 | 309..644 | 100 | <- | Minus |
3L | 16224574..16224688 | 194..308 | 100 | <- | Minus |
3L | 16224940..16225132 | 1..193 | 99 | Minus |
Translation from 130 to 531
> RE17056.hyp MSDSDLDALRAQRMSQMQSQFGGGNDAEKQQAQQEQMRAQEEMKHSILSQ VLDQQARARLNTLKVSKPEKAQMFENMVIRMAQMGQVRGKLDDAQFVSIL ESVNAQMPQSKSSVKYDRRRAAIDSDDDEDYGC*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
PDCD-5-PA | 133 | CG13072-PA | 1..133 | 1..133 | 661 | 100 | Plus |
Translation from 130 to 531
> RE17056.pep MSDSDLDALRAQRMSQMQSQFGGGNDAEKQQAQQEQMRAQEEMKHSILSQ VLDQQARARLNTLKVSKPEKAQMFENMVIRMAQMGQVRGKLDDAQFVSIL ESVNAQMPQSKSSVKYDRRRAAIDSDDDEDYGC*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF10314-PA | 135 | GF10314-PA | 1..135 | 1..133 | 659 | 96.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG13487-PA | 135 | GG13487-PA | 1..135 | 1..133 | 663 | 97.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH15624-PA | 135 | GH15624-PA | 1..135 | 1..133 | 651 | 94.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
PDCD-5-PA | 133 | CG13072-PA | 1..133 | 1..133 | 661 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI12672-PA | 131 | GI12672-PA | 1..131 | 1..133 | 567 | 91 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL18027-PA | 135 | GL18027-PA | 1..135 | 1..133 | 654 | 95.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA12022-PA | 135 | GA12022-PA | 1..135 | 1..133 | 650 | 94.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM24437-PA | 133 | GM24437-PA | 1..133 | 1..133 | 669 | 97.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD12504-PA | 133 | GD12504-PA | 1..133 | 1..133 | 673 | 98.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ12652-PA | 131 | GJ12652-PA | 1..131 | 1..133 | 565 | 91.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK25167-PA | 135 | GK25167-PA | 1..135 | 1..133 | 649 | 94.8 | Plus |