Clone RE17089 Report

Search the DGRC for RE17089

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:170
Well:89
Vector:pFlc-1
Associated Gene/TranscriptRbbp5-RA
Protein status:RE17089.pep: gold
Preliminary Size:1470
Sequenced Size:1535

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5585 2001-12-14 Blastp of sequenced clone
CG5585 2002-01-01 Sim4 clustering to Release 2
CG5585 2003-01-01 Sim4 clustering to Release 3
CG5585 2008-04-29 Release 5.5 accounting
CG5585 2008-08-15 Release 5.9 accounting
CG5585 2008-12-18 5.12 accounting

Clone Sequence Records

RE17089.complete Sequence

1535 bp (1535 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071120

> RE17089.complete
CATTTTAAAAGAAGAAGATAGTAAACAAAAATGAATTTGGAGCTACTAGA
ATCTTTCGGACAAAACTACCCAGAGGAGTTCGACGGCTCGCTGGATTGCA
TTTCGTTGGCCGTGACGTGTGCCTTTAACAAATACGGAACCCTTTTGGCC
GTGGGATGCAATGATGGCCGCATTGTAATCTGGGATTTTCTGACGAGGGG
CATTGCCAAGATTATTTCGGCCCATGTGCATCCCGTTTGCAGTCTCAGTT
GGACCAGGAATGGTCACAAGTTACTTTCAGCTTCCACGGACAACAATGTG
TGCATTTGGGATGTGCTAACCGGCGAACTGGAACACAAGTATAGGTTTCC
ATCGCCTGTGCTGAAAGTACAGTTCGATCCCCGAAATGACAACCGACTTT
TGGTGTGCCCCATGCGATATGCCGCCGTTCTTGTAGAGGTCGGCGGAACT
CACCGCTGCCTGCCCTTGGATTCCGATGGCGACTTGAACATCGTGGCTTC
TTTCGATCGCAGAGGCAAACACATCTACACAGGCAACGCCAAGGGAAAAA
TACTCGTACTGGATGTTGAAACCTTTGAGGTGGTCGCCAGTTTTCGCATT
ATTGTAGGCACCTCAAGTGCAACGGCTGTAAAAAGCATCGAGTTTGCGAG
GCGTGGAGACGCATTTCTAATCAACACCTCAGATCGAGTTATTCGTGTTT
ACGACTCAAAAGAAATAATCACTCTAGGCAAAGACGGCGAACCGGAACCT
ATACAAAAGCTACAGGACTTGGTCAATAAAACCACCTGGAAAAAGTGCTG
CTTCTCCGGTGATGGGGAGTACATTTGCGCTGGCAGTGCTCGCCAGCATG
CTCTTTACATATGGGAAAAGTCTATTGGAAACCTGGTGAAGATCCTGCAT
GGCACCAAGGGTGAGCTGCTCTTGGACGTGGTGTGGCATCCTGTGCGGCC
TATTATTGCCAGCATTAGCTCCGGACTGGTATCCATTTGGGCCCAAAATC
AAGTGGAAAACTGGTCTGCCTTTGCACCAGATTTCAAGGAATTAGACGAA
AACGTAGAGTACGAAGAGCGGGAGTCAGAGTTCGACATTGCGGACGAAGA
CAAGTCTGTGGATCTGAATGCAGACGCGCAACAGGACGAGGAAATTGAGG
TAGACGTGCAGAAAGTGGAGCCGGTGGCTGCCTTTTGCTCCTCCGACGAA
GAGGGCGAGGACGAGAATGCGCTGCAGTTTTTGCCAATGGCACCAGAGGT
GGAGGATCCCGAGGATGGCTGGACCGGTCAGGACGGACTGGAGCCCAGTG
CAGTTATGCTTGGCCACATGGAACCGCATGACTATGAGGACGACATAATG
GCTTCCAAGCGACGACGCATGCAGCTCTATGATGTCAGCTTACCTGATGC
ACCCACTGATGAAACGCATCCGCTCATTTCTAGCAAGGCCAGCAAAGATA
AACAACAGCCCGTGGGTGGCAAAAAGGCCGCCGGACGTACCAAGAAATAA
ACATCATTTGGCATTGCCCAAAAAAAAAAAAAAAA

RE17089.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:40:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG5585-RA 2032 CG5585-RA 178..1695 1..1518 7590 100 Plus
CG5585.a 1893 CG5585.a 86..1556 48..1518 7355 100 Plus
CG6434-RA 694 CG6434-RA 43..566 396..919 2545 99 Plus
CG5585.a 1893 CG5585.a 29..77 1..49 245 100 Plus
CG6434-RA 694 CG6434-RA 574..610 1411..1447 155 94.5 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:44:49
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 20335314..20335945 1411..780 3160 100 Minus
chr3L 24539361 chr3L 20336683..20336905 270..48 1115 100 Minus
chr3L 24539361 chr3L 20336421..20336630 478..269 1035 99.5 Minus
chr3L 24539361 chr3L 20311980..20312161 659..478 910 100 Minus
chr3L 24539361 chr3L 20336178..20336359 659..478 895 99.5 Minus
chr3L 24539361 chr3L 20311608..20311747 919..780 700 100 Minus
chr3L 24539361 chr3L 20336005..20336124 779..660 600 100 Minus
chr3L 24539361 chr3L 20311807..20311926 779..660 585 99.2 Minus
chr3L 24539361 chr3L 20335138..20335245 1518..1411 540 100 Minus
chr3L 24539361 chr3L 20312223..20312305 478..396 400 98.8 Minus
chr3L 24539361 chr3L 20336961..20337009 49..1 245 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:38:23 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:44:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20346244..20346875 1411..780 3160 100 Minus
3L 28110227 3L 20347613..20347835 270..48 1115 100 Minus
3L 28110227 3L 20347351..20347560 478..269 1050 100 Minus
3L 28110227 3L 20347108..20347289 659..478 910 100 Minus
3L 28110227 3L 20322877..20323058 659..478 895 99.5 Minus
3L 28110227 3L 20322505..20322644 919..780 700 100 Minus
3L 28110227 3L 20346935..20347054 779..660 600 100 Minus
3L 28110227 3L 20322704..20322823 779..660 585 99.2 Minus
3L 28110227 3L 20346068..20346175 1518..1411 540 100 Minus
3L 28110227 3L 20323120..20323202 478..396 370 96.4 Minus
3L 28110227 3L 20347891..20347939 49..1 245 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:07:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 20339344..20339975 1411..780 3160 100 Minus
3L 28103327 3L 20340713..20340935 270..48 1115 100 Minus
3L 28103327 3L 20340451..20340660 478..269 1050 100 Minus
3L 28103327 3L 20340208..20340389 659..478 910 100 Minus
3L 28103327 3L 20315977..20316158 659..478 895 99.4 Minus
3L 28103327 3L 20315605..20315744 919..780 700 100 Minus
3L 28103327 3L 20340035..20340154 779..660 600 100 Minus
3L 28103327 3L 20315804..20315923 779..660 585 99.1 Minus
3L 28103327 3L 20339168..20339275 1518..1411 540 100 Minus
3L 28103327 3L 20316220..20316302 478..396 370 96.3 Minus
3L 28103327 3L 20340991..20341039 49..1 245 100 Minus
3L 28103327 3L 20315561..20315597 1447..1411 155 94.5 Minus
Blast to na_te.dros performed on 2019-03-16 12:44:48 has no hits.

RE17089.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:45:53 Download gff for RE17089.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 20336422..20336628 271..477 99 <- Minus
chr3L 20336683..20336903 50..270 100 <- Minus
chr3L 20336961..20337009 1..49 100   Minus
chr3L 20335137..20335244 1412..1519 99 <- Minus
chr3L 20335314..20335945 780..1411 100 <- Minus
chr3L 20336005..20336124 660..779 100 <- Minus
chr3L 20336178..20336359 478..659 99 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:58:30 Download gff for RE17089.complete
Subject Subject Range Query Range Percent Splice Strand
CG5585-RA 1..1470 31..1500 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:05:01 Download gff for RE17089.complete
Subject Subject Range Query Range Percent Splice Strand
CG5585-RA 1..1470 31..1500 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:38:26 Download gff for RE17089.complete
Subject Subject Range Query Range Percent Splice Strand
Rbbp5-RA 1..1470 31..1500 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:29:41 Download gff for RE17089.complete
Subject Subject Range Query Range Percent Splice Strand
CG5585-RA 1..1470 31..1500 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:53:39 Download gff for RE17089.complete
Subject Subject Range Query Range Percent Splice Strand
Rbbp5-RA 1..1470 31..1500 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:32:44 Download gff for RE17089.complete
Subject Subject Range Query Range Percent Splice Strand
CG5585-RA 1..1518 1..1519 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:05:01 Download gff for RE17089.complete
Subject Subject Range Query Range Percent Splice Strand
CG5585-RA 14..1531 1..1519 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:38:26 Download gff for RE17089.complete
Subject Subject Range Query Range Percent Splice Strand
Rbbp5-RA 4..1521 1..1519 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:29:41 Download gff for RE17089.complete
Subject Subject Range Query Range Percent Splice Strand
CG5585-RA 1..1518 1..1519 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:53:39 Download gff for RE17089.complete
Subject Subject Range Query Range Percent Splice Strand
Rbbp5-RA 4..1521 1..1519 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:45:53 Download gff for RE17089.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20346067..20346174 1412..1519 99 <- Minus
3L 20346244..20346875 780..1411 100 <- Minus
3L 20346935..20347054 660..779 100 <- Minus
3L 20347108..20347289 478..659 100 <- Minus
3L 20347352..20347558 271..477 100 <- Minus
3L 20347613..20347833 50..270 100 <- Minus
3L 20347891..20347939 1..49 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:45:53 Download gff for RE17089.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20346067..20346174 1412..1519 99 <- Minus
3L 20346244..20346875 780..1411 100 <- Minus
3L 20346935..20347054 660..779 100 <- Minus
3L 20347108..20347289 478..659 100 <- Minus
3L 20347352..20347558 271..477 100 <- Minus
3L 20347613..20347833 50..270 100 <- Minus
3L 20347891..20347939 1..49 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:45:53 Download gff for RE17089.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20346067..20346174 1412..1519 99 <- Minus
3L 20346244..20346875 780..1411 100 <- Minus
3L 20346935..20347054 660..779 100 <- Minus
3L 20347108..20347289 478..659 100 <- Minus
3L 20347352..20347558 271..477 100 <- Minus
3L 20347613..20347833 50..270 100 <- Minus
3L 20347891..20347939 1..49 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:38:26 Download gff for RE17089.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20339167..20339274 1412..1519 99 <- Minus
arm_3L 20339344..20339975 780..1411 100 <- Minus
arm_3L 20340035..20340154 660..779 100 <- Minus
arm_3L 20340208..20340389 478..659 100 <- Minus
arm_3L 20340452..20340658 271..477 100 <- Minus
arm_3L 20340713..20340933 50..270 100 <- Minus
arm_3L 20340991..20341039 1..49 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:05:45 Download gff for RE17089.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20339344..20339975 780..1411 100 <- Minus
3L 20340035..20340154 660..779 100 <- Minus
3L 20340208..20340389 478..659 100 <- Minus
3L 20340452..20340658 271..477 100 <- Minus
3L 20340713..20340933 50..270 100 <- Minus
3L 20340991..20341039 1..49 100   Minus
3L 20339167..20339274 1412..1519 99 <- Minus

RE17089.pep Sequence

Translation from 30 to 1499

> RE17089.pep
MNLELLESFGQNYPEEFDGSLDCISLAVTCAFNKYGTLLAVGCNDGRIVI
WDFLTRGIAKIISAHVHPVCSLSWTRNGHKLLSASTDNNVCIWDVLTGEL
EHKYRFPSPVLKVQFDPRNDNRLLVCPMRYAAVLVEVGGTHRCLPLDSDG
DLNIVASFDRRGKHIYTGNAKGKILVLDVETFEVVASFRIIVGTSSATAV
KSIEFARRGDAFLINTSDRVIRVYDSKEIITLGKDGEPEPIQKLQDLVNK
TTWKKCCFSGDGEYICAGSARQHALYIWEKSIGNLVKILHGTKGELLLDV
VWHPVRPIIASISSGLVSIWAQNQVENWSAFAPDFKELDENVEYEERESE
FDIADEDKSVDLNADAQQDEEIEVDVQKVEPVAAFCSSDEEGEDENALQF
LPMAPEVEDPEDGWTGQDGLEPSAVMLGHMEPHDYEDDIMASKRRRMQLY
DVSLPDAPTDETHPLISSKASKDKQQPVGGKKAAGRTKK*

RE17089.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 20:36:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24147-PA 488 GF24147-PA 1..488 1..489 2532 96.5 Plus
Dana\GF17851-PA 332 GF17851-PA 55..285 38..281 171 23.4 Plus
Dana\GF20700-PA 347 GF20700-PA 60..336 29..314 163 25.1 Plus
Dana\GF23009-PA 509 GF23009-PA 217..507 28..320 158 21.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 20:36:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13327-PA 488 GG13327-PA 1..488 1..489 2567 98.6 Plus
Dere\GG17291-PA 471 GG17291-PA 194..424 38..281 162 23.4 Plus
Dere\GG24701-PA 347 GG24701-PA 60..336 29..314 153 23.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 20:36:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16829-PA 488 GH16829-PA 1..488 1..489 2496 95.1 Plus
Dgri\GH22558-PA 336 GH22558-PA 59..289 38..281 157 22.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:51:02
Subject Length Description Subject Range Query Range Score Percent Strand
Rbbp5-PA 489 CG5585-PA 1..489 1..489 2574 100 Plus
CG3909-PA 331 CG3909-PA 55..284 39..281 169 24.3 Plus
CG3436-PC 347 CG3436-PC 60..336 29..314 156 23.1 Plus
CG3436-PA 347 CG3436-PA 60..336 29..314 156 23.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 20:36:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11921-PA 486 GI11921-PA 1..486 1..489 2462 94.7 Plus
Dmoj\GI23133-PA 339 GI23133-PA 62..292 38..281 164 23.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 20:36:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25040-PA 488 GL25040-PA 1..488 1..489 2512 96.3 Plus
Dper\GL18847-PA 347 GL18847-PA 60..336 29..314 160 23.4 Plus
Dper\GL27199-PA 344 GL27199-PA 67..297 38..281 157 23 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 20:36:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18987-PA 488 GA18987-PA 1..488 1..489 2512 96.3 Plus
Dpse\GA17451-PA 347 GA17451-PA 60..336 29..314 160 23.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:36:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22228-PA 466 GM22228-PA 1..466 1..489 2417 93.9 Plus
Dsec\GM23851-PA 332 GM23851-PA 55..285 38..281 179 24.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 20:36:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12200-PA 489 GD12200-PA 1..489 1..489 2602 99.4 Plus
Dsim\GD18659-PA 332 GD18659-PA 55..285 38..281 175 24.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 20:36:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13797-PA 488 GJ13797-PA 1..488 1..489 2507 95.5 Plus
Dvir\GJ10433-PA 349 GJ10433-PA 72..302 38..281 152 22.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 20:36:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17232-PA 488 GK17232-PA 1..488 1..489 2505 95.7 Plus
Dwil\GK22499-PA 334 GK22499-PA 57..287 38..281 164 23 Plus
Dwil\GK23911-PA 347 GK23911-PA 60..336 29..314 151 23.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 20:36:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22415-PA 488 GE22415-PA 1..488 1..489 2567 98.6 Plus
Dyak\GE22416-PA 470 GE22416-PA 14..470 32..489 2389 98.3 Plus
Dyak\GE26002-PA 332 GE26002-PA 55..285 38..281 173 23.8 Plus
Dyak\GE16626-PA 347 GE16626-PA 60..336 29..314 152 23.4 Plus

RE17089.hyp Sequence

Translation from 30 to 1499

> RE17089.hyp
MNLELLESFGQNYPEEFDGSLDCISLAVTCAFNKYGTLLAVGCNDGRIVI
WDFLTRGIAKIISAHVHPVCSLSWTRNGHKLLSASTDNNVCIWDVLTGEL
EHKYRFPSPVLKVQFDPRNDNRLLVCPMRYAAVLVEVGGTHRCLPLDSDG
DLNIVASFDRRGKHIYTGNAKGKILVLDVETFEVVASFRIIVGTSSATAV
KSIEFARRGDAFLINTSDRVIRVYDSKEIITLGKDGEPEPIQKLQDLVNK
TTWKKCCFSGDGEYICAGSARQHALYIWEKSIGNLVKILHGTKGELLLDV
VWHPVRPIIASISSGLVSIWAQNQVENWSAFAPDFKELDENVEYEERESE
FDIADEDKSVDLNADAQQDEEIEVDVQKVEPVAAFCSSDEEGEDENALQF
LPMAPEVEDPEDGWTGQDGLEPSAVMLGHMEPHDYEDDIMASKRRRMQLY
DVSLPDAPTDETHPLISSKASKDKQQPVGGKKAAGRTKK*

RE17089.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:42:55
Subject Length Description Subject Range Query Range Score Percent Strand
Rbbp5-PA 489 CG5585-PA 1..489 1..489 2574 100 Plus
CG3909-PA 331 CG3909-PA 55..284 39..281 169 24.3 Plus
CG3436-PC 347 CG3436-PC 60..336 29..314 156 23.1 Plus
CG3436-PA 347 CG3436-PA 60..336 29..314 156 23.1 Plus