BDGP Sequence Production Resources |
Search the DGRC for RE17089
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 170 |
Well: | 89 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Rbbp5-RA |
Protein status: | RE17089.pep: gold |
Preliminary Size: | 1470 |
Sequenced Size: | 1535 |
Gene | Date | Evidence |
---|---|---|
CG5585 | 2001-12-14 | Blastp of sequenced clone |
CG5585 | 2002-01-01 | Sim4 clustering to Release 2 |
CG5585 | 2003-01-01 | Sim4 clustering to Release 3 |
CG5585 | 2008-04-29 | Release 5.5 accounting |
CG5585 | 2008-08-15 | Release 5.9 accounting |
CG5585 | 2008-12-18 | 5.12 accounting |
1535 bp (1535 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071120
> RE17089.complete CATTTTAAAAGAAGAAGATAGTAAACAAAAATGAATTTGGAGCTACTAGA ATCTTTCGGACAAAACTACCCAGAGGAGTTCGACGGCTCGCTGGATTGCA TTTCGTTGGCCGTGACGTGTGCCTTTAACAAATACGGAACCCTTTTGGCC GTGGGATGCAATGATGGCCGCATTGTAATCTGGGATTTTCTGACGAGGGG CATTGCCAAGATTATTTCGGCCCATGTGCATCCCGTTTGCAGTCTCAGTT GGACCAGGAATGGTCACAAGTTACTTTCAGCTTCCACGGACAACAATGTG TGCATTTGGGATGTGCTAACCGGCGAACTGGAACACAAGTATAGGTTTCC ATCGCCTGTGCTGAAAGTACAGTTCGATCCCCGAAATGACAACCGACTTT TGGTGTGCCCCATGCGATATGCCGCCGTTCTTGTAGAGGTCGGCGGAACT CACCGCTGCCTGCCCTTGGATTCCGATGGCGACTTGAACATCGTGGCTTC TTTCGATCGCAGAGGCAAACACATCTACACAGGCAACGCCAAGGGAAAAA TACTCGTACTGGATGTTGAAACCTTTGAGGTGGTCGCCAGTTTTCGCATT ATTGTAGGCACCTCAAGTGCAACGGCTGTAAAAAGCATCGAGTTTGCGAG GCGTGGAGACGCATTTCTAATCAACACCTCAGATCGAGTTATTCGTGTTT ACGACTCAAAAGAAATAATCACTCTAGGCAAAGACGGCGAACCGGAACCT ATACAAAAGCTACAGGACTTGGTCAATAAAACCACCTGGAAAAAGTGCTG CTTCTCCGGTGATGGGGAGTACATTTGCGCTGGCAGTGCTCGCCAGCATG CTCTTTACATATGGGAAAAGTCTATTGGAAACCTGGTGAAGATCCTGCAT GGCACCAAGGGTGAGCTGCTCTTGGACGTGGTGTGGCATCCTGTGCGGCC TATTATTGCCAGCATTAGCTCCGGACTGGTATCCATTTGGGCCCAAAATC AAGTGGAAAACTGGTCTGCCTTTGCACCAGATTTCAAGGAATTAGACGAA AACGTAGAGTACGAAGAGCGGGAGTCAGAGTTCGACATTGCGGACGAAGA CAAGTCTGTGGATCTGAATGCAGACGCGCAACAGGACGAGGAAATTGAGG TAGACGTGCAGAAAGTGGAGCCGGTGGCTGCCTTTTGCTCCTCCGACGAA GAGGGCGAGGACGAGAATGCGCTGCAGTTTTTGCCAATGGCACCAGAGGT GGAGGATCCCGAGGATGGCTGGACCGGTCAGGACGGACTGGAGCCCAGTG CAGTTATGCTTGGCCACATGGAACCGCATGACTATGAGGACGACATAATG GCTTCCAAGCGACGACGCATGCAGCTCTATGATGTCAGCTTACCTGATGC ACCCACTGATGAAACGCATCCGCTCATTTCTAGCAAGGCCAGCAAAGATA AACAACAGCCCGTGGGTGGCAAAAAGGCCGCCGGACGTACCAAGAAATAA ACATCATTTGGCATTGCCCAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG5585-RA | 2032 | CG5585-RA | 178..1695 | 1..1518 | 7590 | 100 | Plus |
CG5585.a | 1893 | CG5585.a | 86..1556 | 48..1518 | 7355 | 100 | Plus |
CG6434-RA | 694 | CG6434-RA | 43..566 | 396..919 | 2545 | 99 | Plus |
CG5585.a | 1893 | CG5585.a | 29..77 | 1..49 | 245 | 100 | Plus |
CG6434-RA | 694 | CG6434-RA | 574..610 | 1411..1447 | 155 | 94.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 20335314..20335945 | 1411..780 | 3160 | 100 | Minus |
chr3L | 24539361 | chr3L | 20336683..20336905 | 270..48 | 1115 | 100 | Minus |
chr3L | 24539361 | chr3L | 20336421..20336630 | 478..269 | 1035 | 99.5 | Minus |
chr3L | 24539361 | chr3L | 20311980..20312161 | 659..478 | 910 | 100 | Minus |
chr3L | 24539361 | chr3L | 20336178..20336359 | 659..478 | 895 | 99.5 | Minus |
chr3L | 24539361 | chr3L | 20311608..20311747 | 919..780 | 700 | 100 | Minus |
chr3L | 24539361 | chr3L | 20336005..20336124 | 779..660 | 600 | 100 | Minus |
chr3L | 24539361 | chr3L | 20311807..20311926 | 779..660 | 585 | 99.2 | Minus |
chr3L | 24539361 | chr3L | 20335138..20335245 | 1518..1411 | 540 | 100 | Minus |
chr3L | 24539361 | chr3L | 20312223..20312305 | 478..396 | 400 | 98.8 | Minus |
chr3L | 24539361 | chr3L | 20336961..20337009 | 49..1 | 245 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 20346244..20346875 | 1411..780 | 3160 | 100 | Minus |
3L | 28110227 | 3L | 20347613..20347835 | 270..48 | 1115 | 100 | Minus |
3L | 28110227 | 3L | 20347351..20347560 | 478..269 | 1050 | 100 | Minus |
3L | 28110227 | 3L | 20347108..20347289 | 659..478 | 910 | 100 | Minus |
3L | 28110227 | 3L | 20322877..20323058 | 659..478 | 895 | 99.5 | Minus |
3L | 28110227 | 3L | 20322505..20322644 | 919..780 | 700 | 100 | Minus |
3L | 28110227 | 3L | 20346935..20347054 | 779..660 | 600 | 100 | Minus |
3L | 28110227 | 3L | 20322704..20322823 | 779..660 | 585 | 99.2 | Minus |
3L | 28110227 | 3L | 20346068..20346175 | 1518..1411 | 540 | 100 | Minus |
3L | 28110227 | 3L | 20323120..20323202 | 478..396 | 370 | 96.4 | Minus |
3L | 28110227 | 3L | 20347891..20347939 | 49..1 | 245 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 20339344..20339975 | 1411..780 | 3160 | 100 | Minus |
3L | 28103327 | 3L | 20340713..20340935 | 270..48 | 1115 | 100 | Minus |
3L | 28103327 | 3L | 20340451..20340660 | 478..269 | 1050 | 100 | Minus |
3L | 28103327 | 3L | 20340208..20340389 | 659..478 | 910 | 100 | Minus |
3L | 28103327 | 3L | 20315977..20316158 | 659..478 | 895 | 99.4 | Minus |
3L | 28103327 | 3L | 20315605..20315744 | 919..780 | 700 | 100 | Minus |
3L | 28103327 | 3L | 20340035..20340154 | 779..660 | 600 | 100 | Minus |
3L | 28103327 | 3L | 20315804..20315923 | 779..660 | 585 | 99.1 | Minus |
3L | 28103327 | 3L | 20339168..20339275 | 1518..1411 | 540 | 100 | Minus |
3L | 28103327 | 3L | 20316220..20316302 | 478..396 | 370 | 96.3 | Minus |
3L | 28103327 | 3L | 20340991..20341039 | 49..1 | 245 | 100 | Minus |
3L | 28103327 | 3L | 20315561..20315597 | 1447..1411 | 155 | 94.5 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 20336422..20336628 | 271..477 | 99 | <- | Minus |
chr3L | 20336683..20336903 | 50..270 | 100 | <- | Minus |
chr3L | 20336961..20337009 | 1..49 | 100 | Minus | |
chr3L | 20335137..20335244 | 1412..1519 | 99 | <- | Minus |
chr3L | 20335314..20335945 | 780..1411 | 100 | <- | Minus |
chr3L | 20336005..20336124 | 660..779 | 100 | <- | Minus |
chr3L | 20336178..20336359 | 478..659 | 99 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5585-RA | 1..1470 | 31..1500 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5585-RA | 1..1470 | 31..1500 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rbbp5-RA | 1..1470 | 31..1500 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5585-RA | 1..1470 | 31..1500 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rbbp5-RA | 1..1470 | 31..1500 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5585-RA | 1..1518 | 1..1519 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5585-RA | 14..1531 | 1..1519 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rbbp5-RA | 4..1521 | 1..1519 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5585-RA | 1..1518 | 1..1519 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rbbp5-RA | 4..1521 | 1..1519 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 20346067..20346174 | 1412..1519 | 99 | <- | Minus |
3L | 20346244..20346875 | 780..1411 | 100 | <- | Minus |
3L | 20346935..20347054 | 660..779 | 100 | <- | Minus |
3L | 20347108..20347289 | 478..659 | 100 | <- | Minus |
3L | 20347352..20347558 | 271..477 | 100 | <- | Minus |
3L | 20347613..20347833 | 50..270 | 100 | <- | Minus |
3L | 20347891..20347939 | 1..49 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 20346067..20346174 | 1412..1519 | 99 | <- | Minus |
3L | 20346244..20346875 | 780..1411 | 100 | <- | Minus |
3L | 20346935..20347054 | 660..779 | 100 | <- | Minus |
3L | 20347108..20347289 | 478..659 | 100 | <- | Minus |
3L | 20347352..20347558 | 271..477 | 100 | <- | Minus |
3L | 20347613..20347833 | 50..270 | 100 | <- | Minus |
3L | 20347891..20347939 | 1..49 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 20346067..20346174 | 1412..1519 | 99 | <- | Minus |
3L | 20346244..20346875 | 780..1411 | 100 | <- | Minus |
3L | 20346935..20347054 | 660..779 | 100 | <- | Minus |
3L | 20347108..20347289 | 478..659 | 100 | <- | Minus |
3L | 20347352..20347558 | 271..477 | 100 | <- | Minus |
3L | 20347613..20347833 | 50..270 | 100 | <- | Minus |
3L | 20347891..20347939 | 1..49 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 20339167..20339274 | 1412..1519 | 99 | <- | Minus |
arm_3L | 20339344..20339975 | 780..1411 | 100 | <- | Minus |
arm_3L | 20340035..20340154 | 660..779 | 100 | <- | Minus |
arm_3L | 20340208..20340389 | 478..659 | 100 | <- | Minus |
arm_3L | 20340452..20340658 | 271..477 | 100 | <- | Minus |
arm_3L | 20340713..20340933 | 50..270 | 100 | <- | Minus |
arm_3L | 20340991..20341039 | 1..49 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 20339344..20339975 | 780..1411 | 100 | <- | Minus |
3L | 20340035..20340154 | 660..779 | 100 | <- | Minus |
3L | 20340208..20340389 | 478..659 | 100 | <- | Minus |
3L | 20340452..20340658 | 271..477 | 100 | <- | Minus |
3L | 20340713..20340933 | 50..270 | 100 | <- | Minus |
3L | 20340991..20341039 | 1..49 | 100 | Minus | |
3L | 20339167..20339274 | 1412..1519 | 99 | <- | Minus |
Translation from 30 to 1499
> RE17089.pep MNLELLESFGQNYPEEFDGSLDCISLAVTCAFNKYGTLLAVGCNDGRIVI WDFLTRGIAKIISAHVHPVCSLSWTRNGHKLLSASTDNNVCIWDVLTGEL EHKYRFPSPVLKVQFDPRNDNRLLVCPMRYAAVLVEVGGTHRCLPLDSDG DLNIVASFDRRGKHIYTGNAKGKILVLDVETFEVVASFRIIVGTSSATAV KSIEFARRGDAFLINTSDRVIRVYDSKEIITLGKDGEPEPIQKLQDLVNK TTWKKCCFSGDGEYICAGSARQHALYIWEKSIGNLVKILHGTKGELLLDV VWHPVRPIIASISSGLVSIWAQNQVENWSAFAPDFKELDENVEYEERESE FDIADEDKSVDLNADAQQDEEIEVDVQKVEPVAAFCSSDEEGEDENALQF LPMAPEVEDPEDGWTGQDGLEPSAVMLGHMEPHDYEDDIMASKRRRMQLY DVSLPDAPTDETHPLISSKASKDKQQPVGGKKAAGRTKK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF24147-PA | 488 | GF24147-PA | 1..488 | 1..489 | 2532 | 96.5 | Plus |
Dana\GF17851-PA | 332 | GF17851-PA | 55..285 | 38..281 | 171 | 23.4 | Plus |
Dana\GF20700-PA | 347 | GF20700-PA | 60..336 | 29..314 | 163 | 25.1 | Plus |
Dana\GF23009-PA | 509 | GF23009-PA | 217..507 | 28..320 | 158 | 21.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG13327-PA | 488 | GG13327-PA | 1..488 | 1..489 | 2567 | 98.6 | Plus |
Dere\GG17291-PA | 471 | GG17291-PA | 194..424 | 38..281 | 162 | 23.4 | Plus |
Dere\GG24701-PA | 347 | GG24701-PA | 60..336 | 29..314 | 153 | 23.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH16829-PA | 488 | GH16829-PA | 1..488 | 1..489 | 2496 | 95.1 | Plus |
Dgri\GH22558-PA | 336 | GH22558-PA | 59..289 | 38..281 | 157 | 22.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Rbbp5-PA | 489 | CG5585-PA | 1..489 | 1..489 | 2574 | 100 | Plus |
CG3909-PA | 331 | CG3909-PA | 55..284 | 39..281 | 169 | 24.3 | Plus |
CG3436-PC | 347 | CG3436-PC | 60..336 | 29..314 | 156 | 23.1 | Plus |
CG3436-PA | 347 | CG3436-PA | 60..336 | 29..314 | 156 | 23.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI11921-PA | 486 | GI11921-PA | 1..486 | 1..489 | 2462 | 94.7 | Plus |
Dmoj\GI23133-PA | 339 | GI23133-PA | 62..292 | 38..281 | 164 | 23.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL25040-PA | 488 | GL25040-PA | 1..488 | 1..489 | 2512 | 96.3 | Plus |
Dper\GL18847-PA | 347 | GL18847-PA | 60..336 | 29..314 | 160 | 23.4 | Plus |
Dper\GL27199-PA | 344 | GL27199-PA | 67..297 | 38..281 | 157 | 23 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18987-PA | 488 | GA18987-PA | 1..488 | 1..489 | 2512 | 96.3 | Plus |
Dpse\GA17451-PA | 347 | GA17451-PA | 60..336 | 29..314 | 160 | 23.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM22228-PA | 466 | GM22228-PA | 1..466 | 1..489 | 2417 | 93.9 | Plus |
Dsec\GM23851-PA | 332 | GM23851-PA | 55..285 | 38..281 | 179 | 24.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD12200-PA | 489 | GD12200-PA | 1..489 | 1..489 | 2602 | 99.4 | Plus |
Dsim\GD18659-PA | 332 | GD18659-PA | 55..285 | 38..281 | 175 | 24.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ13797-PA | 488 | GJ13797-PA | 1..488 | 1..489 | 2507 | 95.5 | Plus |
Dvir\GJ10433-PA | 349 | GJ10433-PA | 72..302 | 38..281 | 152 | 22.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK17232-PA | 488 | GK17232-PA | 1..488 | 1..489 | 2505 | 95.7 | Plus |
Dwil\GK22499-PA | 334 | GK22499-PA | 57..287 | 38..281 | 164 | 23 | Plus |
Dwil\GK23911-PA | 347 | GK23911-PA | 60..336 | 29..314 | 151 | 23.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE22415-PA | 488 | GE22415-PA | 1..488 | 1..489 | 2567 | 98.6 | Plus |
Dyak\GE22416-PA | 470 | GE22416-PA | 14..470 | 32..489 | 2389 | 98.3 | Plus |
Dyak\GE26002-PA | 332 | GE26002-PA | 55..285 | 38..281 | 173 | 23.8 | Plus |
Dyak\GE16626-PA | 347 | GE16626-PA | 60..336 | 29..314 | 152 | 23.4 | Plus |
Translation from 30 to 1499
> RE17089.hyp MNLELLESFGQNYPEEFDGSLDCISLAVTCAFNKYGTLLAVGCNDGRIVI WDFLTRGIAKIISAHVHPVCSLSWTRNGHKLLSASTDNNVCIWDVLTGEL EHKYRFPSPVLKVQFDPRNDNRLLVCPMRYAAVLVEVGGTHRCLPLDSDG DLNIVASFDRRGKHIYTGNAKGKILVLDVETFEVVASFRIIVGTSSATAV KSIEFARRGDAFLINTSDRVIRVYDSKEIITLGKDGEPEPIQKLQDLVNK TTWKKCCFSGDGEYICAGSARQHALYIWEKSIGNLVKILHGTKGELLLDV VWHPVRPIIASISSGLVSIWAQNQVENWSAFAPDFKELDENVEYEERESE FDIADEDKSVDLNADAQQDEEIEVDVQKVEPVAAFCSSDEEGEDENALQF LPMAPEVEDPEDGWTGQDGLEPSAVMLGHMEPHDYEDDIMASKRRRMQLY DVSLPDAPTDETHPLISSKASKDKQQPVGGKKAAGRTKK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Rbbp5-PA | 489 | CG5585-PA | 1..489 | 1..489 | 2574 | 100 | Plus |
CG3909-PA | 331 | CG3909-PA | 55..284 | 39..281 | 169 | 24.3 | Plus |
CG3436-PC | 347 | CG3436-PC | 60..336 | 29..314 | 156 | 23.1 | Plus |
CG3436-PA | 347 | CG3436-PA | 60..336 | 29..314 | 156 | 23.1 | Plus |