Clone RE17220 Report

Search the DGRC for RE17220

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:172
Well:20
Vector:pFlc-1
Associated Gene/TranscriptCG31235-RA
Protein status:RE17220.pep: gold
Preliminary Size:819
Sequenced Size:1578

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG31235 2001-12-14 Blastp of sequenced clone
CG7117 2002-01-01 Sim4 clustering to Release 2
CG31235 2003-01-01 Sim4 clustering to Release 3
CG31235 2008-04-29 Release 5.5 accounting
CG31235 2008-08-15 Release 5.9 accounting
CG31235 2008-12-18 5.12 accounting

Clone Sequence Records

RE17220.complete Sequence

1578 bp (1578 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071125

> RE17220.complete
AGTTTTCGTTCAACATTTGTGTCGTGCAGACCCAGTCACAGATTCATTCA
TCGATTGCAGGGGAAGAAAGTGAGGCAGGACCTAACGCGCACCCAGTAGC
ATCCAAAGCATACACTCAAGGATGGAACGATTGCTGACCATGTTCGAGGA
GGCGGATCCCTTCGCCACGTGGTGGCCCACGATAGCGGCCCTCACGGTGG
GCATTGTGATTACGGTGCGGACCTTAATGAGCGGCCAGCGCTGTCCGAAC
GATAATCAAATCAAGGAGCAAATCGTGGTGGTCACCGGCGGCAACAGCGG
CATTGGCTTCGAAATAGCCCAGGCTCTGGCTGGCCGAGGTGGCCGGATAA
TCCTCGCCTGCCGCAATCTCGAGGCCGGGAAGCGGGCGGCGGCCATAATC
AAACGTGAGCTGGGCTGCCGCACACCCCTGAATTCCTTGGATGAGGATGA
CAATCCGGAGGACAGGTACTTCGTGGAGGCACGCTACTTGGACCTCTGTT
CGCTGCGCAGTGTCCATCACTTTGCCGGCCAGCTGATGGCGGAATTCGAG
CGGATCGATGTGCTGGTGAACAATGCCGGAGTGGTATTCGCCAACACTCA
GATGCCCACCGAGGATGGCTTCGAACGGCACAGCCAGGTGAACTATCTGG
CCCCCTTCCTGTTGACCCACCTGCTCCTGCCACACTTGCAACGCTCGGAG
CAAGGACGCATCCTCTTCGTTTCCGCCCATGCCCATCAGGGCGCCAAAAT
CGATTTCGACGATCCCCTGAATGTGGGCACCTGGTCGGTGAAGTTCCACG
CCCGCGAAGCATTTGCCCACTCCAAGCTCTGCGTGCTCCTTGCCACCCGT
TGGATGGCCAGGGAACTGAAAGGTACCTCGGTCACGGTCAACTGCTGTAC
GCCAGGACTCGTCCGTGGAACCCGCCATTTTCGCAACTCGCCGCTGATGT
CGTCCCTCTGCGTGAAGGCGGTCACCTATCCGTGGATGTGGCTGTTCATG
AAGAATGCCTACGAGGGCGCCCAGTGCGCCATCCGCTTGGCCACCGATCC
CCAGCTGAAGGAAGTCACCGGCGAGTACTTCAATGATTGCGAAATTGCGG
CAAGTTCGGTGACGGGCCAAGACAAGGAGTTGGCCAAGAAGCTGTATATG
CAAACCATAAAAACCCTCGAAAGCGTTACCAAGCTAACCGTCGACAGGGA
GGAGTACGGCTTGGATTTGCAGCTGGAGATGGAGTCTGAGCTGAGGCTGG
AGGAACCGGCGGAAGCGGAACCGGAAACGGAAACGAACCAGGCAGCGGAT
GAAAAGAAGTGGCAGGGGAATGGTGAGACGAAGCAGCCGTAGTCATTGGA
GTGATTTATGCCTGGCACGCGGCCCGAGTTCCTTGGAGACTGCCAACTGC
AACGTCTATTTGCATTCGGTTTAACAATTGCCGCATTAGGCAGCCTCCCC
TCGCCCACCTCCCCCCTCCCCCCTCCCGCCATTTTATGTGGACCCCTGAC
TTTGTGGGGCTTCCCCGTTTTTCGCCGGAAATAAATGCAACTTTAATGTG
CGAGCAGCCTGTAAAAAAAAAAAAAAAA

RE17220.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:45:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG31235-RA 1717 CG31235-RA 47..1607 1..1561 7805 100 Plus
CG31235.a 2528 CG31235.a 24..1584 1..1561 7805 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:38:06
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 14150268..14150924 875..219 3255 99.7 Minus
chr3R 27901430 chr3R 14141303..14141773 1561..1084 2205 97.9 Minus
chr3R 27901430 chr3R 14152994..14153213 220..1 1085 99.5 Minus
chr3R 27901430 chr3R 14141906..14142056 1083..933 725 98.7 Minus
chr3R 27901430 chr3R 14149743..14149808 936..871 330 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:38:31 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:38:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18326003..18326659 875..219 3285 100 Minus
3R 32079331 3R 18317005..18317482 1561..1084 2390 100 Minus
3R 32079331 3R 18328720..18328939 220..1 1100 100 Minus
3R 32079331 3R 18317615..18317765 1083..933 740 99.3 Minus
3R 32079331 3R 18325478..18325543 936..871 330 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:12:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 18066834..18067490 875..219 3285 100 Minus
3R 31820162 3R 18057836..18058313 1561..1084 2390 100 Minus
3R 31820162 3R 18069551..18069770 220..1 1100 100 Minus
3R 31820162 3R 18058446..18058596 1083..933 740 99.3 Minus
3R 31820162 3R 18066309..18066374 936..871 330 100 Minus
Blast to na_te.dros performed on 2019-03-15 22:38:05 has no hits.

RE17220.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:39:12 Download gff for RE17220.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 14152995..14153213 1..219 99   Minus
chr3R 14141302..14141773 1084..1562 97 <- Minus
chr3R 14141906..14142052 937..1083 99 <- Minus
chr3R 14149743..14149806 873..936 100 <- Minus
chr3R 14150271..14150923 220..872 99 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:46:32 Download gff for RE17220.complete
Subject Subject Range Query Range Percent Splice Strand
CG31235-RA 1..1221 122..1342 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:12:58 Download gff for RE17220.complete
Subject Subject Range Query Range Percent Splice Strand
CG31235-RA 1..1221 122..1342 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:28:03 Download gff for RE17220.complete
Subject Subject Range Query Range Percent Splice Strand
CG31235-RA 1..1221 122..1342 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:37:08 Download gff for RE17220.complete
Subject Subject Range Query Range Percent Splice Strand
CG31235-RA 1..1221 122..1342 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:31:02 Download gff for RE17220.complete
Subject Subject Range Query Range Percent Splice Strand
CG31235-RA 1..1221 122..1342 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:46:31 Download gff for RE17220.complete
Subject Subject Range Query Range Percent Splice Strand
CG31235-RA 1..1560 1..1560 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:12:58 Download gff for RE17220.complete
Subject Subject Range Query Range Percent Splice Strand
CG31235-RA 1..1560 1..1560 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:28:03 Download gff for RE17220.complete
Subject Subject Range Query Range Percent Splice Strand
CG31235-RA 4..1564 1..1561 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:37:08 Download gff for RE17220.complete
Subject Subject Range Query Range Percent Splice Strand
CG31235-RA 1..1560 1..1560 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:31:02 Download gff for RE17220.complete
Subject Subject Range Query Range Percent Splice Strand
CG31235-RA 4..1564 1..1561 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:39:12 Download gff for RE17220.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18325478..18325541 873..936 100 <- Minus
3R 18317004..18317482 1084..1562 99 <- Minus
3R 18317615..18317761 937..1083 100 <- Minus
3R 18326006..18326658 220..872 100 <- Minus
3R 18328721..18328939 1..219 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:39:12 Download gff for RE17220.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18325478..18325541 873..936 100 <- Minus
3R 18317004..18317482 1084..1562 99 <- Minus
3R 18317615..18317761 937..1083 100 <- Minus
3R 18326006..18326658 220..872 100 <- Minus
3R 18328721..18328939 1..219 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:39:12 Download gff for RE17220.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18325478..18325541 873..936 100 <- Minus
3R 18317004..18317482 1084..1562 99 <- Minus
3R 18317615..18317761 937..1083 100 <- Minus
3R 18326006..18326658 220..872 100 <- Minus
3R 18328721..18328939 1..219 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:28:03 Download gff for RE17220.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14142726..14143204 1084..1562 99 <- Minus
arm_3R 14143337..14143483 937..1083 100 <- Minus
arm_3R 14151200..14151263 873..936 100 <- Minus
arm_3R 14151728..14152380 220..872 100 <- Minus
arm_3R 14154443..14154661 1..219 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:14:43 Download gff for RE17220.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18057835..18058313 1084..1562 99 <- Minus
3R 18058446..18058592 937..1083 100 <- Minus
3R 18066309..18066372 873..936 100 <- Minus
3R 18066837..18067489 220..872 100 <- Minus
3R 18069552..18069770 1..219 100   Minus

RE17220.pep Sequence

Translation from 121 to 1341

> RE17220.pep
MERLLTMFEEADPFATWWPTIAALTVGIVITVRTLMSGQRCPNDNQIKEQ
IVVVTGGNSGIGFEIAQALAGRGGRIILACRNLEAGKRAAAIIKRELGCR
TPLNSLDEDDNPEDRYFVEARYLDLCSLRSVHHFAGQLMAEFERIDVLVN
NAGVVFANTQMPTEDGFERHSQVNYLAPFLLTHLLLPHLQRSEQGRILFV
SAHAHQGAKIDFDDPLNVGTWSVKFHAREAFAHSKLCVLLATRWMARELK
GTSVTVNCCTPGLVRGTRHFRNSPLMSSLCVKAVTYPWMWLFMKNAYEGA
QCAIRLATDPQLKEVTGEYFNDCEIAASSVTGQDKELAKKLYMQTIKTLE
SVTKLTVDREEYGLDLQLEMESELRLEEPAEAEPETETNQAADEKKWQGN
GETKQP*

RE17220.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:20:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18120-PA 404 GF18120-PA 2..402 1..406 1768 83.6 Plus
Dana\GF13188-PA 331 GF13188-PA 1..316 5..342 445 34 Plus
Dana\GF18115-PA 336 GF18115-PA 19..325 21..347 433 33.7 Plus
Dana\GF13189-PA 327 GF13189-PA 1..321 1..347 425 34.4 Plus
Dana\GF13192-PA 293 GF13192-PA 16..287 50..347 400 37.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:20:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16486-PA 406 GG16486-PA 1..405 1..405 2109 96.3 Plus
Dere\GG23292-PA 296 GG23292-PA 1..290 36..347 445 36.2 Plus
Dere\GG16476-PA 336 GG16476-PA 21..330 20..356 439 33.9 Plus
Dere\GG23293-PA 327 GG23293-PA 14..321 18..347 427 35.6 Plus
Dere\GG23291-PA 331 GG23291-PA 1..316 5..342 411 33.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:21:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19233-PA 374 GH19233-PA 1..369 1..370 1567 78.6 Plus
Dgri\GH19227-PA 336 GH19227-PA 16..330 12..356 440 34.1 Plus
Dgri\GH21876-PA 334 GH21876-PA 1..331 5..356 419 34 Plus
Dgri\GH21883-PA 573 GH21883-PA 274..565 33..347 414 36.8 Plus
Dgri\GH13932-PA 100 GH13932-PA 1..85 276..360 386 81.2 Plus
Dgri\GH21883-PA 573 GH21883-PA 63..256 50..264 288 38.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:32:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG31235-PB 406 CG31235-PB 1..406 1..406 2125 100 Plus
CG31235-PA 406 CG31235-PA 1..406 1..406 2125 100 Plus
CG30495-PA 327 CG30495-PA 21..321 26..347 442 35 Plus
CG2070-PB 325 CG2070-PB 17..319 22..347 439 36.1 Plus
CG2070-PA 325 CG2070-PA 17..319 22..347 439 36.1 Plus
CG30491-PB 331 CG30491-PB 1..316 5..342 439 32.8 Plus
CG30491-PA 331 CG30491-PA 1..316 5..342 439 32.8 Plus
CG30495-PB 331 CG30495-PB 21..325 26..347 434 34.9 Plus
CG3842-PD 406 CG3842-PD 36..325 14..323 432 38.4 Plus
CG3842-PC 406 CG3842-PC 36..325 14..323 432 38.4 Plus
CG3842-PB 406 CG3842-PB 36..325 14..323 432 38.4 Plus
CG3842-PA 406 CG3842-PA 36..325 14..323 432 38.4 Plus
CG7675-PD 336 CG7675-PD 19..330 24..356 423 34.3 Plus
CG7675-PB 336 CG7675-PB 19..330 24..356 423 34.3 Plus
CG7675-PE 287 CG7675-PE 6..281 52..356 406 35.7 Plus
CG7675-PC 287 CG7675-PC 6..281 52..356 406 35.7 Plus
CG7675-PA 287 CG7675-PA 6..281 52..356 406 35.7 Plus
CG2064-PA 330 CG2064-PA 15..319 18..347 404 34.5 Plus
CG2065-PB 300 CG2065-PB 1..290 36..347 398 34.8 Plus
CG2065-PA 300 CG2065-PA 1..290 36..347 398 34.8 Plus
CG11200-PC 355 CG11200-PC 67..318 49..322 255 30.4 Plus
CG11200-PA 355 CG11200-PA 67..318 49..322 255 30.4 Plus
CG11200-PB 355 CG11200-PB 67..318 49..322 255 30.4 Plus
Wwox-PB 409 CG7221-PB 125..409 53..362 251 29.2 Plus
Wwox-PA 409 CG7221-PA 125..409 53..362 251 29.2 Plus
CG7601-PA 326 CG7601-PA 49..240 45..265 198 28.8 Plus
CG31549-PB 257 CG31549-PB 2..195 45..271 159 29.4 Plus
CG31549-PA 257 CG31549-PA 2..195 45..271 159 29.4 Plus
CG12171-PA 257 CG12171-PA 5..188 48..264 154 28.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:21:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24267-PA 373 GI24267-PA 1..371 1..372 1590 80.6 Plus
Dmoj\GI24262-PA 336 GI24262-PA 21..328 20..350 451 33.9 Plus
Dmoj\GI20381-PA 417 GI20381-PA 115..409 30..347 388 34.6 Plus
Dmoj\GI15186-PA 397 GI15186-PA 48..320 28..323 364 36.9 Plus
Dmoj\GI16896-PA 408 GI16896-PA 122..393 50..342 285 32.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:21:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23200-PA 408 GL23200-PA 1..384 1..391 1740 85.2 Plus
Dper\GL20020-PA 332 GL20020-PA 13..316 17..342 411 35 Plus
Dper\GL23193-PA 336 GL23193-PA 21..325 20..347 405 34.2 Plus
Dper\GL20021-PA 296 GL20021-PA 1..290 36..347 394 34.6 Plus
Dper\GL11532-PA 327 GL11532-PA 11..319 13..347 390 34.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:21:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16110-PA 404 GA16110-PA 1..386 1..393 1745 84.7 Plus
Dpse\GA15878-PA 332 GA15878-PA 13..316 17..342 412 34.4 Plus
Dpse\GA15882-PB 324 GA15882-PB 26..318 33..347 400 34.6 Plus
Dpse\GA15218-PA 327 GA15218-PA 11..319 13..347 393 34.9 Plus
Dpse\GA17725-PA 394 GA17725-PA 57..324 32..322 372 38.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:21:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18714-PA 272 GM18714-PA 1..271 1..271 1448 98.5 Plus
Dsec\GM15302-PA 131 GM15302-PA 1..131 276..406 665 96.2 Plus
Dsec\GM20970-PA 325 GM20970-PA 16..296 22..324 419 37.2 Plus
Dsec\GM20969-PA 327 GM20969-PA 21..324 26..350 414 35.8 Plus
Dsec\GM20968-PA 331 GM20968-PA 1..316 5..342 406 33.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:21:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20180-PA 540 GD20180-PA 1..366 36..401 1940 98.1 Plus
Dsim\GD20174-PA 336 GD20174-PA 21..330 20..356 437 33.9 Plus
Dsim\GD10499-PA 325 GD10499-PA 16..319 22..347 421 35.8 Plus
Dsim\GD10498-PA 327 GD10498-PA 21..321 26..347 414 36.1 Plus
Dsim\GD10497-PA 331 GD10497-PA 1..316 5..342 403 32.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:21:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10839-PA 373 GJ10839-PA 1..371 1..372 1615 81.2 Plus
Dvir\GJ10835-PA 336 GJ10835-PA 7..328 17..350 459 33.7 Plus
Dvir\GJ22105-PA 333 GJ22105-PA 1..316 5..342 414 33.7 Plus
Dvir\GJ22107-PA 327 GJ22107-PA 15..319 18..347 381 35.6 Plus
Dvir\GJ22106-PA 327 GJ22106-PA 15..319 18..347 381 33.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:21:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11498-PA 378 GK11498-PA 1..373 1..375 1695 82.7 Plus
Dwil\GK18000-PA 297 GK18000-PA 1..291 36..347 439 34.6 Plus
Dwil\GK17999-PA 337 GK17999-PA 13..316 17..342 424 35 Plus
Dwil\GK11493-PA 336 GK11493-PA 22..328 24..350 411 34.6 Plus
Dwil\GK18001-PA 325 GK18001-PA 11..319 19..347 397 34.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:21:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25202-PA 336 GE25202-PA 21..330 20..356 434 33.6 Plus
Dyak\GE25204-PA 287 GE25204-PA 4..281 50..356 419 35.2 Plus
Dyak\GE19139-PA 326 GE19139-PA 16..296 22..324 418 37.2 Plus
Dyak\GE19137-PA 331 GE19137-PA 13..316 17..342 406 33.7 Plus
Dyak\GE19138-PA 327 GE19138-PA 21..321 26..347 402 35.9 Plus

RE17220.hyp Sequence

Translation from 121 to 1341

> RE17220.hyp
MERLLTMFEEADPFATWWPTIAALTVGIVITVRTLMSGQRCPNDNQIKEQ
IVVVTGGNSGIGFEIAQALAGRGGRIILACRNLEAGKRAAAIIKRELGCR
TPLNSLDEDDNPEDRYFVEARYLDLCSLRSVHHFAGQLMAEFERIDVLVN
NAGVVFANTQMPTEDGFERHSQVNYLAPFLLTHLLLPHLQRSEQGRILFV
SAHAHQGAKIDFDDPLNVGTWSVKFHAREAFAHSKLCVLLATRWMARELK
GTSVTVNCCTPGLVRGTRHFRNSPLMSSLCVKAVTYPWMWLFMKNAYEGA
QCAIRLATDPQLKEVTGEYFNDCEIAASSVTGQDKELAKKLYMQTIKTLE
SVTKLTVDREEYGLDLQLEMESELRLEEPAEAEPETETNQAADEKKWQGN
GETKQP*

RE17220.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:32:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG31235-PB 406 CG31235-PB 1..406 1..406 2125 100 Plus
CG31235-PA 406 CG31235-PA 1..406 1..406 2125 100 Plus
CG30495-PA 327 CG30495-PA 21..321 26..347 442 35 Plus
CG2070-PB 325 CG2070-PB 17..319 22..347 439 36.1 Plus
CG2070-PA 325 CG2070-PA 17..319 22..347 439 36.1 Plus