BDGP Sequence Production Resources |
Search the DGRC for RE17222
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 172 |
Well: | 22 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG31109-RA |
Protein status: | RE17222.pep: gold |
Preliminary Size: | 1203 |
Sequenced Size: | 876 |
Gene | Date | Evidence |
---|---|---|
CG31109 | 2001-12-14 | Blastp of sequenced clone |
CG13649 | 2002-01-01 | Sim4 clustering to Release 2 |
CG31109 | 2003-01-01 | Sim4 clustering to Release 3 |
CG31109 | 2008-04-29 | Release 5.5 accounting |
CG31109 | 2008-08-15 | Release 5.9 accounting |
CG31109 | 2008-12-18 | 5.12 accounting |
876 bp (876 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071126
> RE17222.complete ACATATGTACACAACACCTATCTGAAAAGTATTAAACAATATTTTGGGAA AGTTGTTTTGGCTAGCGTTAAATTAAACGACATCCCAACCAGCAGCTGAG GATATAGCCAACCAACAGAATCGGAATCAATCAAGATGGGGAGCATAGAA AAGGCGTGCATATCGGGATTTCTATGCCGACTGTGTTCAGAGATGCACCG CACAGTAATACATATTTATAGTGATCATGGCCAGCGTTTGTGTCTTGTTG AGAAAATCAACGGTTACCTACCAATTACAATATCTCCGACTGATCCATTG CCAAAAACCATATGCAAATCATGTCTGCATCGCGTGGAGCAGCATTACTC GCTCCTGATGCGTCTGACGCGGATGCGGGAGGAGCGCAAGTTTAAGTTAA TCAAATACAAAGCACAAAGAAATCCCTCGATATCCAGCGTGGAATCGGAA GAGGACGTGATAAATTCAAGCTCGGTTCACGAGTTCCCCAATCGGAATGA GGAGGATCAAGCGACCCGCCGCAGCGAGTCGACGAGCACCCAAGCTGAAA CTGGTCCACAGACCCAGGAATCCCAATCCCCCAAGTCAACAAAGACCGCA GTGTCCACACCAAACAGCAGCGAAAGCCACGATGCCAGTGGTGCTGGGCC CAGCAATAGAGACCGAAAAGAGACTGGCACAGGCAACTCGGAAACGGGTA GCACTACTCGGGAAGGAACCCATGCAGATTAATAACTGCTAACCTCGTCT CTGGTCGGTGGAGCTATATATACGAGTACTTGACTATGTATATATATAGA CGCGTTTGTGTGTACGTACGTTTAGATTGGAATAAAGTAAGCATTTTATT TAAAAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 20876648..20877040 | 851..459 | 1965 | 100 | Minus |
chr3R | 27901430 | chr3R | 20877527..20877805 | 279..1 | 1395 | 100 | Minus |
chr3R | 27901430 | chr3R | 20877213..20877350 | 417..280 | 690 | 100 | Minus |
chr3R | 27901430 | chr3R | 20877104..20877145 | 459..418 | 210 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 25053475..25053869 | 853..459 | 1975 | 100 | Minus |
3R | 32079331 | 3R | 25054356..25054634 | 279..1 | 1395 | 100 | Minus |
3R | 32079331 | 3R | 25054042..25054179 | 417..280 | 690 | 100 | Minus |
3R | 32079331 | 3R | 25053933..25053974 | 459..418 | 210 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 24794306..24794700 | 853..459 | 1975 | 100 | Minus |
3R | 31820162 | 3R | 24795187..24795465 | 279..1 | 1395 | 100 | Minus |
3R | 31820162 | 3R | 24794873..24795010 | 417..280 | 690 | 100 | Minus |
3R | 31820162 | 3R | 24794764..24794805 | 459..418 | 210 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 20877527..20877805 | 1..279 | 100 | Minus | |
chr3R | 20876648..20877039 | 460..851 | 100 | <- | Minus |
chr3R | 20877104..20877145 | 418..459 | 100 | <- | Minus |
chr3R | 20877213..20877350 | 280..417 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31109-RA | 1..597 | 136..732 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31109-RA | 1..597 | 136..732 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31109-RA | 1..597 | 136..732 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31109-RA | 1..597 | 136..732 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31109-RA | 1..597 | 136..732 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31109-RA | 1..851 | 1..851 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31109-RA | 1..851 | 1..851 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31109-RA | 20..870 | 1..851 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31109-RA | 1..851 | 1..851 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31109-RA | 20..870 | 1..851 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 25053477..25053868 | 460..851 | 100 | <- | Minus |
3R | 25053933..25053974 | 418..459 | 100 | <- | Minus |
3R | 25054042..25054179 | 280..417 | 100 | <- | Minus |
3R | 25054356..25054634 | 1..279 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 25053477..25053868 | 460..851 | 100 | <- | Minus |
3R | 25053933..25053974 | 418..459 | 100 | <- | Minus |
3R | 25054042..25054179 | 280..417 | 100 | <- | Minus |
3R | 25054356..25054634 | 1..279 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 25053477..25053868 | 460..851 | 100 | <- | Minus |
3R | 25053933..25053974 | 418..459 | 100 | <- | Minus |
3R | 25054042..25054179 | 280..417 | 100 | <- | Minus |
3R | 25054356..25054634 | 1..279 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 20879199..20879590 | 460..851 | 100 | <- | Minus |
arm_3R | 20879655..20879696 | 418..459 | 100 | <- | Minus |
arm_3R | 20879764..20879901 | 280..417 | 100 | <- | Minus |
arm_3R | 20880078..20880356 | 1..279 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 24794308..24794699 | 460..851 | 100 | <- | Minus |
3R | 24794764..24794805 | 418..459 | 100 | <- | Minus |
3R | 24794873..24795010 | 280..417 | 100 | <- | Minus |
3R | 24795187..24795465 | 1..279 | 100 | Minus |
Translation from 135 to 731
> RE17222.pep MGSIEKACISGFLCRLCSEMHRTVIHIYSDHGQRLCLVEKINGYLPITIS PTDPLPKTICKSCLHRVEQHYSLLMRLTRMREERKFKLIKYKAQRNPSIS SVESEEDVINSSSVHEFPNRNEEDQATRRSESTSTQAETGPQTQESQSPK STKTAVSTPNSSESHDASGAGPSNRDRKETGTGNSETGSTTREGTHAD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF17108-PA | 173 | GF17108-PA | 1..152 | 1..179 | 454 | 61.1 | Plus |
Dana\GF22100-PA | 110 | GF22100-PA | 1..67 | 1..67 | 177 | 50.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG12294-PA | 200 | GG12294-PA | 1..200 | 1..198 | 882 | 86.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH22342-PA | 99 | GH22342-PA | 1..96 | 1..96 | 487 | 90.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG31109-PB | 198 | CG31109-PB | 1..198 | 1..198 | 1030 | 100 | Plus |
CG31109-PA | 198 | CG31109-PA | 1..198 | 1..198 | 1030 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI23979-PA | 176 | GI23979-PA | 1..175 | 1..173 | 524 | 61 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21892-PA | 177 | GL21892-PA | 1..173 | 1..191 | 584 | 62.9 | Plus |
Dper\GL14868-PA | 114 | GL14868-PA | 1..74 | 1..74 | 189 | 47.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA16015-PA | 99 | GA16015-PA | 1..95 | 1..95 | 485 | 91.6 | Plus |
Dpse\GA26404-PA | 109 | GA26404-PA | 1..74 | 1..74 | 206 | 51.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM17760-PA | 195 | GM17760-PA | 1..195 | 1..198 | 913 | 91 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD18242-PA | 201 | GD18242-PA | 1..201 | 1..198 | 961 | 94 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ11182-PA | 176 | GJ11182-PA | 1..110 | 1..107 | 525 | 88.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK14356-PA | 187 | GK14356-PA | 1..184 | 1..195 | 514 | 56.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE10747-PA | 200 | GE10747-PA | 1..200 | 1..198 | 866 | 84.7 | Plus |
Translation from 135 to 731
> RE17222.hyp MGSIEKACISGFLCRLCSEMHRTVIHIYSDHGQRLCLVEKINGYLPITIS PTDPLPKTICKSCLHRVEQHYSLLMRLTRMREERKFKLIKYKAQRNPSIS SVESEEDVINSSSVHEFPNRNEEDQATRRSESTSTQAETGPQTQESQSPK STKTAVSTPNSSESHDASGAGPSNRDRKETGTGNSETGSTTREGTHAD*