Clone RE17371 Report

Search the DGRC for RE17371

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:173
Well:71
Vector:pFlc-1
Associated Gene/Transcriptl(2)09851-RA
Protein status:RE17371.pep: gold
Preliminary Size:1482
Sequenced Size:1536

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12792 2002-01-01 Sim4 clustering to Release 2
CG12792 2002-06-26 Blastp of sequenced clone
CG12792 2003-01-01 Sim4 clustering to Release 3
l(2)09851 2008-04-29 Release 5.5 accounting
l(2)09851 2008-08-15 Release 5.9 accounting
l(2)09851 2008-12-18 5.12 accounting

Clone Sequence Records

RE17371.complete Sequence

1536 bp (1536 high quality bases) assembled on 2002-06-26

GenBank Submission: AY128462

> RE17371.complete
ACTGTCAGCCACTCTTTATTTCAAAGCCGCACGTGCTAAATTTAACAGGC
TAGTTTCGTGAATCCAAAGCCCAGTAGAAAGCTATGGATGATGGAAATGA
AAACATTAGTATGGAAGTGGTGGAGCCCGAAGACGCCGAGAGCGACATGA
GCTCTGACAGTGGTAGTGACGCAGAAGACGATACCGCTGAGCCCAAAGCC
CCCAAAGAGGTCTACTTGCCCGGAACCAAACTCGCAGACGATGAGGAGCT
GGTCTGCGATGAGAGTGCGTACGTGATGCTGCACCAAGCTTCTACGGGAG
CTCCCTGCCTGAGCTTTGATGTCATTCCCGACGAGTTGGGCAGCGGACGG
CAGTCGTTCCCGATGACGGCTTATATTGTGGCCGGCACGCAAGCTTCCCG
CGCCCATGTCAACAACCTTATTGTGATGAAAATGAGCAACCTGCACAAGA
CGCAGGACAATGACGGCGACGAAGACGAGGAGCTAGAAGACGACCAAGAC
GACGTGACTGACAGGGAGGAGCTCAAAAAGCCGCAGATGACATGCGCCCT
TGTCAAGCACCAAGGGTGCGTTAATCGCGTCCGTGCCCGCCGATTGGGCA
ATTCGGTCTACGCTGCCTCCTGGAGCGAACTTGGTCGTGTGAACATTTGG
GACCTAACTCAGCCATTGCAGGCCGTGGAGAACGCTCAGTTGGCCAAGCA
GTACGAGCAAAGCGAAGCGCGTCCAGTGTTTACTTTTGGTGGCCATCAGC
AGGAGGGCTTCGCCATCGACTGGAGTCCCAGTGCAGATGGTGTACTGGCG
ACAGGGGACTGCCGGCGAGACATACACGTGTGGACTCCGGTAGAAGACGG
CACATGGAAAGTTGATCAACGTCCCCTAGCGGGCCACTCACAGTCAGTTG
AAGATCTGCAATGGAGTCCAAACGAACGTAGCGTTCTCGCGTCCTGTTCG
GTGGACAAAACCATCCGAATTTGGGACTGCCGCGCCTCGCCTCAGAAAGC
ATGTATGCTGACATGCGAGGACGCACACCAGAGCGACGTAAACGTGATTT
CGTGGAATCGCAACGAGCCTTTTATCGCCAGTGGCGGCGACGACGGCTAC
CTCCACATCTGGGACCTACGTCAGTTTCAGAGCAAAAAGCCGATTGCCAC
TTTTAAGCACCACACGGACCACATCACTACTGTCGAATGGAGTCCCGCAG
AGGCTACCGTACTGGCGTCAGGCGGTGACGATGACCAAATTGCTTTGTGG
GATTTGGCTGTAGAGAAGGACATCGATCAGGCGGTGGACCCGGCGCAAAA
CGAAGATGTCCTAAACAAGTTGCCACCGCAATTGCTTTTTATTCACCAGG
GACAAAAGGAGATTAAAGAGCTACACTGGCACCCTCAACTGCCGGGCGTT
CTACTTTCTACAGCCCACAGTGGCTTTAATATCTTTCGCACGATCAGTGT
CTGACCTCGCTATTATTCTGTTTCTTAACGTTAAAAAAATTAAACCGATC
TTGTGTCTTTGGGTTTTAAGAAAAAAAAAAAAAAAA

RE17371.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:44:56
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)09851-RA 1526 l(2)09851-RA 6..1526 1..1521 7590 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:31:16
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 1641918..1643437 1..1520 7585 99.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:38:37 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:31:14
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5754533..5756054 1..1522 7595 99.9 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:18:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 5755732..5757253 1..1522 7595 99.9 Plus
Blast to na_te.dros performed on 2019-03-16 22:31:15 has no hits.

RE17371.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:32:10 Download gff for RE17371.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 1641918..1643437 1..1520 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:58:44 Download gff for RE17371.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)09851-RA 1..1371 84..1454 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:18:56 Download gff for RE17371.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)09851-RA 1..1371 84..1454 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:15:20 Download gff for RE17371.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)09851-RA 1..1371 84..1454 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:10:02 Download gff for RE17371.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)09851-RA 1..1371 84..1454 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:40:17 Download gff for RE17371.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)09851-RA 1..1371 84..1454 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:44:05 Download gff for RE17371.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)09851-RA 6..1525 1..1520 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:18:56 Download gff for RE17371.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)09851-RA 6..1525 1..1520 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:15:20 Download gff for RE17371.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)09851-RA 17..1536 1..1520 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:10:02 Download gff for RE17371.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)09851-RA 6..1525 1..1520 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:40:17 Download gff for RE17371.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)09851-RA 17..1536 1..1520 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:32:10 Download gff for RE17371.complete
Subject Subject Range Query Range Percent Splice Strand
2R 5754533..5756052 1..1520 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:32:10 Download gff for RE17371.complete
Subject Subject Range Query Range Percent Splice Strand
2R 5754533..5756052 1..1520 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:32:10 Download gff for RE17371.complete
Subject Subject Range Query Range Percent Splice Strand
2R 5754533..5756052 1..1520 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:15:20 Download gff for RE17371.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1642038..1643557 1..1520 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:42:13 Download gff for RE17371.complete
Subject Subject Range Query Range Percent Splice Strand
2R 5755732..5757251 1..1520 99   Plus

RE17371.pep Sequence

Translation from 83 to 1453

> RE17371.pep
MDDGNENISMEVVEPEDAESDMSSDSGSDAEDDTAEPKAPKEVYLPGTKL
ADDEELVCDESAYVMLHQASTGAPCLSFDVIPDELGSGRQSFPMTAYIVA
GTQASRAHVNNLIVMKMSNLHKTQDNDGDEDEELEDDQDDVTDREELKKP
QMTCALVKHQGCVNRVRARRLGNSVYAASWSELGRVNIWDLTQPLQAVEN
AQLAKQYEQSEARPVFTFGGHQQEGFAIDWSPSADGVLATGDCRRDIHVW
TPVEDGTWKVDQRPLAGHSQSVEDLQWSPNERSVLASCSVDKTIRIWDCR
ASPQKACMLTCEDAHQSDVNVISWNRNEPFIASGGDDGYLHIWDLRQFQS
KKPIATFKHHTDHITTVEWSPAEATVLASGGDDDQIALWDLAVEKDIDQA
VDPAQNEDVLNKLPPQLLFIHQGQKEIKELHWHPQLPGVLLSTAHSGFNI
FRTISV*

RE17371.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 04:55:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13839-PA 448 GF13839-PA 1..448 10..456 1865 80.2 Plus
Dana\GF11355-PA 430 GF11355-PA 125..398 157..444 331 30.8 Plus
Dana\GF16340-PA 832 GF16340-PA 215..396 206..397 194 26.8 Plus
Dana\GF23142-PA 917 GF23142-PA 135..256 262..389 171 26.2 Plus
Dana\GF22217-PA 361 GF22217-PA 66..256 216..420 164 25.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 04:55:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23179-PA 458 GG23179-PA 1..458 1..456 2224 92.6 Plus
Dere\GG16897-PA 430 GG16897-PA 125..398 157..444 331 30.8 Plus
Dere\GG12984-PA 804 GG12984-PA 212..393 206..397 196 26.8 Plus
Dere\GG19653-PA 1056 GG19653-PA 60..250 150..386 175 27.8 Plus
Dere\GG22391-PA 335 GG22391-PA 9..175 217..389 169 27.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 04:55:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20229-PA 468 GH20229-PA 1..468 1..456 1930 79.5 Plus
Dgri\GH18845-PA 429 GH18845-PA 124..397 157..444 330 30.8 Plus
Dgri\GH19503-PA 804 GH19503-PA 212..393 206..397 196 26.8 Plus
Dgri\GH12580-PA 982 GH12580-PA 38..250 184..386 179 30.5 Plus
Dgri\GH22022-PA 358 GH22022-PA 58..266 216..437 167 26.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:00:43
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)09851-PB 456 CG12792-PB 1..456 1..456 2434 100 Plus
l(2)09851-PA 456 CG12792-PA 1..456 1..456 2434 100 Plus
Caf1-55-PA 430 CG4236-PA 5..398 24..444 337 27.6 Plus
Caf1-55-PB 429 CG4236-PB 124..397 157..444 336 31.2 Plus
Wdr33-PB 807 CG1109-PB 213..394 206..397 199 26.8 Plus
Wdr33-PA 807 CG1109-PA 213..394 206..397 199 26.8 Plus
Ciao1-PA 335 CG12797-PA 9..185 217..402 185 27.4 Plus
Hira-PA 1047 CG12153-PA 60..250 150..386 180 27.3 Plus
CG3436-PC 347 CG3436-PC 47..211 214..391 172 27.9 Plus
CG3436-PA 347 CG3436-PA 47..211 214..391 172 27.9 Plus
wds-PB 361 CG17437-PB 66..238 216..402 170 26.2 Plus
wds-PA 361 CG17437-PA 66..238 216..402 170 26.2 Plus
Nle-PA 488 CG2863-PA 371..486 265..389 170 32.8 Plus
ebi-PA 700 CG4063-PA 438..614 209..391 165 26.7 Plus
beta'COP-PA 914 CG6699-PA 135..256 262..389 165 26.2 Plus
Taf5-PA 704 CG7704-PA 519..646 258..390 164 32.1 Plus
BRWD3-PA 2232 CG31132-PA 285..542 176..451 158 23.7 Plus
fzy-PA 526 CG4274-PA 216..400 228..442 155 25.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 04:55:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19400-PA 460 GI19400-PA 1..460 1..456 2001 81.3 Plus
Dmoj\GI22916-PA 429 GI22916-PA 124..397 157..444 331 30.8 Plus
Dmoj\GI23774-PA 804 GI23774-PA 213..394 206..397 197 26.8 Plus
Dmoj\GI16203-PA 981 GI16203-PA 53..251 143..387 173 27.3 Plus
Dmoj\GI13843-PA 1694 GI13843-PA 760..922 215..391 172 26.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 04:55:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20061-PA 456 GL20061-PA 1..456 1..456 2054 83.8 Plus
Dper\GL12530-PA 430 GL12530-PA 125..398 157..444 331 30.8 Plus
Dper\GL12106-PA 430 GL12106-PA 125..398 157..444 326 30.8 Plus
Dper\GL21279-PA 422 GL21279-PA 114..390 157..444 300 29.9 Plus
Dper\GL21757-PA 442 GL21757-PA 135..401 155..435 240 25.5 Plus
Dper\GL21757-PA 442 GL21757-PA 189..353 265..444 206 28.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 04:55:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11814-PA 456 GA11814-PA 1..456 1..456 2055 83.6 Plus
Dpse\GA18051-PA 430 GA18051-PA 125..398 157..444 331 30.8 Plus
Dpse\GA26389-PB 440 GA26389-PB 133..399 155..435 247 26.2 Plus
Dpse\GA26389-PB 440 GA26389-PB 137..351 221..444 201 26.8 Plus
Dpse\GA10752-PA 812 GA10752-PA 213..394 206..397 189 26.3 Plus
Dpse\GA11439-PA 1019 GA11439-PA 49..230 141..371 185 28.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 04:55:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16519-PA 457 GM16519-PA 1..457 1..456 2375 96.9 Plus
Dsec\GM24205-PA 430 GM24205-PA 125..398 157..444 331 31.2 Plus
Dsec\GM10830-PA 808 GM10830-PA 213..394 206..397 196 26.8 Plus
Dsec\GM17533-PA 1047 GM17533-PA 49..250 141..386 173 27 Plus
Dsec\GM16719-PA 347 GM16719-PA 47..211 214..391 166 28.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 04:55:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10383-PA 456 GD10383-PA 1..456 1..456 2395 97.4 Plus
Dsim\GD18995-PA 430 GD18995-PA 125..398 157..444 331 31.2 Plus
Dsim\GD19809-PA 807 GD19809-PA 213..394 206..397 196 26.8 Plus
Dsim\GD25651-PA 335 GD25651-PA 9..174 217..388 166 27.9 Plus
Dsim\GD23005-PA 347 GD23005-PA 47..211 214..391 166 28.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 04:55:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22462-PA 464 GJ22462-PA 1..464 1..456 2008 81.7 Plus
Dvir\GJ23199-PA 429 GJ23199-PA 124..397 157..444 331 30.8 Plus
Dvir\GJ22241-PA 373 GJ22241-PA 71..281 216..440 196 27.6 Plus
Dvir\GJ15893-PA 991 GJ15893-PA 53..251 143..387 180 28.5 Plus
Dvir\GJ11707-PA 1546 GJ11707-PA 424..586 215..391 175 27.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 04:55:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23014-PA 457 GK23014-PA 4..457 2..456 1988 82.1 Plus
Dwil\GK14487-PA 429 GK14487-PA 124..397 157..444 331 30.8 Plus
Dwil\GK13364-PA 820 GK13364-PA 213..394 206..397 197 26.8 Plus
Dwil\GK25579-PA 1032 GK25579-PA 53..250 143..386 180 26.6 Plus
Dwil\GK12739-PA 309 GK12739-PA 83..265 203..395 171 27.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 04:55:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\l(2)09851-PA 456 GE20561-PA 1..456 1..456 2141 92.1 Plus
Dyak\GE24278-PA 430 GE24278-PA 125..398 157..444 331 30.8 Plus
Dyak\GE10153-PA 801 GE10153-PA 212..393 206..397 196 26.8 Plus
Dyak\GE12280-PA 335 GE12280-PA 9..175 217..389 172 27.7 Plus
Dyak\GE15728-PA 1054 GE15728-PA 60..250 150..386 172 27.3 Plus

RE17371.hyp Sequence

Translation from 83 to 1453

> RE17371.hyp
MDDGNENISMEVVEPEDAESDMSSDSGSDAEDDTAEPKAPKEVYLPGTKL
ADDEELVCDESAYVMLHQASTGAPCLSFDVIPDELGSGRQSFPMTAYIVA
GTQASRAHVNNLIVMKMSNLHKTQDNDGDEDEELEDDQDDVTDREELKKP
QMTCALVKHQGCVNRVRARRLGNSVYAASWSELGRVNIWDLTQPLQAVEN
AQLAKQYEQSEARPVFTFGGHQQEGFAIDWSPSADGVLATGDCRRDIHVW
TPVEDGTWKVDQRPLAGHSQSVEDLQWSPNERSVLASCSVDKTIRIWDCR
ASPQKACMLTCEDAHQSDVNVISWNRNEPFIASGGDDGYLHIWDLRQFQS
KKPIATFKHHTDHITTVEWSPAEATVLASGGDDDQIALWDLAVEKDIDQA
VDPAQNEDVLNKLPPQLLFIHQGQKEIKELHWHPQLPGVLLSTAHSGFNI
FRTISV*

RE17371.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:48:33
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)09851-PB 456 CG12792-PB 1..456 1..456 2434 100 Plus
l(2)09851-PA 456 CG12792-PA 1..456 1..456 2434 100 Plus
Caf1-PA 430 CG4236-PA 5..398 24..444 337 27.6 Plus
Caf1-PB 429 CG4236-PB 124..397 157..444 336 31.2 Plus
CG1109-PB 807 CG1109-PB 213..394 206..397 199 26.8 Plus