BDGP Sequence Production Resources |
Search the DGRC for RE17389
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 173 |
Well: | 89 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG7239-RA |
Protein status: | RE17389.pep: gold |
Preliminary Size: | 1704 |
Sequenced Size: | 1733 |
Gene | Date | Evidence |
---|---|---|
CG7239 | 2002-01-01 | Sim4 clustering to Release 2 |
CG7239 | 2002-04-22 | Blastp of sequenced clone |
CG7239 | 2003-01-01 | Sim4 clustering to Release 3 |
CG7239 | 2008-04-29 | Release 5.5 accounting |
CG7239 | 2008-08-15 | Release 5.9 accounting |
CG7239 | 2008-12-18 | 5.12 accounting |
1733 bp (1733 high quality bases) assembled on 2002-04-22
GenBank Submission: AY113417
> RE17389.complete GTTGATTTTTTGTGCGGAAAAACTGCACTTGGCTTCAACCATTCTACCAC AGCGTCGCATTGTGTAACTAGAGTGGAGATCGCATATCCAAAGGCAACGT TACAGGGATACATCTGCGGGAGCAGATCAGGAGCCGGTGCAGAGCAGTCG ATGGACTACGAGAAGCTGGCGTTGAACGCGGGCGGAAGCGGCAGCGGTGC CGAGCAGGACTTAGGCATGTGCGGTGGTCAGGAGCTGCTCGATGGCAGGG GCAAGGAGAAGGCGCGTCGCTACTGGACGCCCAGCGAGGAGGAGCGCCTG TACGAGATCTGGGGACGCGACAACTGGCGCCTGACGCGCACCGGCAAGAA CACCATCTTCTTTGGCCGGTGGGCCGAGGAACTGCGCGACCGGTTCGCCG TGGACGTGAAGCCCGAGGAGATCCAGATGAAGGTCAACCAGACCAGGGCC AAGTTCAGGCAAGTCAAAAAACAGCTGCAGGCGGATCCTTCGAGCTATGC TACGCGCTGGAAGAAGTACGACATTATCAATCGCATCCTGAAGAACCTGC ACAGGCCCAAGAACGCCGATCCGCTGCCGCCAGAGGCGCTGCTCAACAAC CGCGACATGACACCGCCCCGGGATGATGCGTCCGCAGAGCAGTTGCAGCA GCAGCCACAGCAGCAATCCGTTCAGCAGCAGCAGCAGCAAGGCTTGGGAC TGGCCAGTGAGCCAAGCACTGCCACCTATTACAATAGCAGCAGCAATAGC AATCACGGCAGCAGCCACAACAACAACACCAGCGGCGGAGTTAGCTTCAA CACGGAGCTGTTTACGGACCAGTATGACGAGGTGGTCAAGCAGGAGTACG AGGACGATGAGTACCGCTCCATTCCCTTTCAGGAGCAGTTGCAACAGTAT TCCCCAGCCGAGCCGGCTCAGCTGCTCGAGCTGCAGACGCCACAGCAGCA GCAACAACTGCAGCAGCAGCAGCAACAACAGCAGCAGTTCCAAACAAACT ATGAGTCGCAATTTCAGCAGCAGCCGGCTCAATTCAATAACAACAGCGTT ATTAGCACTGCGGCCACATCGACCGTCAACCATCAGCCCATAACGGCGGT AGCCTATATCAATAGCAGCAATAACACCATCAGCGTGGCCACAAACGCAA ACGGAGGCATGCCAGCGCCGGTGCCCGCACAGGTATCGGCATCGGTTCCG GCTGCAGCTCCAGTTTCGACCACCAACAACGCCGTCGTTGGCGCCTCCCC CGTCCCTGTGCCACGGAAGCGCGGTCGTCCATTCGGATCTGTGAATCCCC CACACGCAGACTCGCTGGAGGCGCTCTACATGGAGGAAGTTCGGCGAAAG AACCAGCTGCTCTACGAACAAACCAAGATATGTCGGCAGCGACTGGAGCT GGAGGAACGCAAGGTCGACCTCATGCAGACCTTCTTCCCCAAGTGTCTTG AGCAGCAGGCGCAGATTCTGAGCCACGTCCTTCAGCTGCAGAAGCAGCAT CAGCATCCTACGGCCCAGCGGCCGCAGTGAACTCCTTTTCCGACTTTTCA TAACCTCAATTTTGGACCGCAGTGCACGAACACTGGTTTTCAGATACTGG ATTGCTGCAACATGCCGCTTCGCAGGCTGATCGGTGCCACGAAACTTAAC AAAAAACATGCAAAACTGTTTGTAAGATTAAAAAGTAAACTTAAATAATA AATATATTTAAATAACGAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG7239-RA | 1807 | CG7239-RA | 88..1807 | 1..1720 | 8600 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6440..6936 | 649..1141 | 323 | 58.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2314..2656 | 638..986 | 310 | 59.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2345..2910 | 636..1233 | 263 | 55.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..7196 | 646..1134 | 255 | 55.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..6956 | 720..964 | 252 | 59.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6754..7220 | 636..1121 | 249 | 54.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2322..2847 | 594..1134 | 237 | 55.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6692..7089 | 652..1060 | 236 | 55.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2352..2874 | 732..1233 | 182 | 52.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2760..2832 | 714..786 | 176 | 71.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2687 | 737..1133 | 174 | 54.6 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3219..3345 | 649..786 | 159 | 63 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1059..1179 | 647..776 | 151 | 65.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2745..2989 | 526..778 | 140 | 56.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2546 | 528..776 | 133 | 57.4 | Plus |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7942..7994 | 740..795 | 119 | 73.2 | Plus |
TART-C | 11124 | TART-C TARTC 11124bp | 9386..9438 | 740..795 | 119 | 73.2 | Plus |
invader2 | 5124 | invader2 INVADER2 5124bp | 656..725 | 741..809 | 113 | 64.3 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 5801321..5801778 | 1..458 | 99 | -> | Plus |
chr2L | 5801838..5802016 | 459..637 | 100 | == | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7239-RA | 1..1380 | 151..1530 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7239-RA | 1..1380 | 151..1530 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7239-RA | 1..1380 | 151..1530 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7239-RA | 1..1380 | 151..1530 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7239-RA | 1..1380 | 151..1530 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7239-RA | 1..1717 | 1..1717 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7239-RA | 1..1717 | 1..1717 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7239-RA | 36..1752 | 1..1717 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7239-RA | 1..1717 | 1..1717 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7239-RA | 36..1752 | 1..1717 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 5802255..5802712 | 1..458 | 100 | -> | Plus |
2L | 5802772..5804030 | 459..1717 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 5802255..5802712 | 1..458 | 100 | -> | Plus |
2L | 5802772..5804030 | 459..1717 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 5802255..5802712 | 1..458 | 100 | -> | Plus |
2L | 5802772..5804030 | 459..1717 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 5802255..5802712 | 1..458 | 100 | -> | Plus |
arm_2L | 5802772..5804030 | 459..1717 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 5802255..5802712 | 1..458 | 100 | -> | Plus |
2L | 5802772..5804030 | 459..1717 | 100 | Plus |
Translation from 0 to 1529
> RE17389.hyp VDFLCGKTALGFNHSTTASHCVTRVEIAYPKATLQGYICGSRSGAGAEQS MDYEKLALNAGGSGSGAEQDLGMCGGQELLDGRGKEKARRYWTPSEEERL YEIWGRDNWRLTRTGKNTIFFGRWAEELRDRFAVDVKPEEIQMKVNQTRA KFRQVKKQLQADPSSYATRWKKYDIINRILKNLHRPKNADPLPPEALLNN RDMTPPRDDASAEQLQQQPQQQSVQQQQQQGLGLASEPSTATYYNSSSNS NHGSSHNNNTSGGVSFNTELFTDQYDEVVKQEYEDDEYRSIPFQEQLQQY SPAEPAQLLELQTPQQQQQLQQQQQQQQQFQTNYESQFQQQPAQFNNNSV ISTAATSTVNHQPITAVAYINSSNNTISVATNANGGMPAPVPAQVSASVP AAAPVSTTNNAVVGASPVPVPRKRGRPFGSVNPPHADSLEALYMEEVRRK NQLLYEQTKICRQRLELEERKVDLMQTFFPKCLEQQAQILSHVLQLQKQH QHPTAQRPQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG7239-PA | 459 | CG7239-PA | 1..459 | 51..509 | 2396 | 100 | Plus |
CG15740-PB | 975 | CG15740-PB | 423..631 | 213..416 | 168 | 32.8 | Plus |
CG32532-PD | 688 | CG32532-PD | 107..293 | 210..406 | 166 | 32 | Plus |
Smr-PG | 3607 | CG4013-PG | 111..316 | 193..424 | 159 | 29.3 | Plus |
Translation from 150 to 1529
> RE17389.pep MDYEKLALNAGGSGSGAEQDLGMCGGQELLDGRGKEKARRYWTPSEEERL YEIWGRDNWRLTRTGKNTIFFGRWAEELRDRFAVDVKPEEIQMKVNQTRA KFRQVKKQLQADPSSYATRWKKYDIINRILKNLHRPKNADPLPPEALLNN RDMTPPRDDASAEQLQQQPQQQSVQQQQQQGLGLASEPSTATYYNSSSNS NHGSSHNNNTSGGVSFNTELFTDQYDEVVKQEYEDDEYRSIPFQEQLQQY SPAEPAQLLELQTPQQQQQLQQQQQQQQQFQTNYESQFQQQPAQFNNNSV ISTAATSTVNHQPITAVAYINSSNNTISVATNANGGMPAPVPAQVSASVP AAAPVSTTNNAVVGASPVPVPRKRGRPFGSVNPPHADSLEALYMEEVRRK NQLLYEQTKICRQRLELEERKVDLMQTFFPKCLEQQAQILSHVLQLQKQH QHPTAQRPQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF15581-PA | 461 | GF15581-PA | 1..458 | 1..446 | 1343 | 67.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG25097-PA | 468 | GG25097-PA | 1..468 | 1..459 | 1898 | 90 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH10922-PA | 516 | GH10922-PA | 1..176 | 1..159 | 678 | 68.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG7239-PA | 459 | CG7239-PA | 1..459 | 1..459 | 2396 | 100 | Plus |
CG15740-PB | 975 | CG15740-PB | 423..631 | 163..366 | 168 | 32.8 | Plus |
CG32532-PD | 688 | CG32532-PD | 107..293 | 160..356 | 166 | 32 | Plus |
Smr-PG | 3607 | CG4013-PG | 111..316 | 143..374 | 159 | 29.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI13346-PA | 509 | GI13346-PA | 31..492 | 9..446 | 1146 | 64.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL19034-PA | 464 | GL19034-PA | 22..463 | 20..459 | 1180 | 60.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA20204-PA | 464 | GA20204-PA | 22..448 | 20..453 | 1181 | 61.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM18573-PA | 458 | GM18573-PA | 1..458 | 1..459 | 1728 | 85.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD23363-PA | 392 | GD23363-PA | 1..190 | 1..189 | 916 | 95.8 | Plus |
Dsim\GD23363-PA | 392 | GD23363-PA | 187..392 | 253..459 | 822 | 94.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ11986-PA | 527 | GJ11986-PA | 1..510 | 1..446 | 1278 | 59.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK14695-PA | 478 | GK14695-PA | 30..463 | 18..448 | 1315 | 65.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE25647-PA | 471 | GE25647-PA | 1..471 | 1..459 | 1804 | 85.6 | Plus |