Clone RE17389 Report

Search the DGRC for RE17389

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:173
Well:89
Vector:pFlc-1
Associated Gene/TranscriptCG7239-RA
Protein status:RE17389.pep: gold
Preliminary Size:1704
Sequenced Size:1733

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7239 2002-01-01 Sim4 clustering to Release 2
CG7239 2002-04-22 Blastp of sequenced clone
CG7239 2003-01-01 Sim4 clustering to Release 3
CG7239 2008-04-29 Release 5.5 accounting
CG7239 2008-08-15 Release 5.9 accounting
CG7239 2008-12-18 5.12 accounting

Clone Sequence Records

RE17389.complete Sequence

1733 bp (1733 high quality bases) assembled on 2002-04-22

GenBank Submission: AY113417

> RE17389.complete
GTTGATTTTTTGTGCGGAAAAACTGCACTTGGCTTCAACCATTCTACCAC
AGCGTCGCATTGTGTAACTAGAGTGGAGATCGCATATCCAAAGGCAACGT
TACAGGGATACATCTGCGGGAGCAGATCAGGAGCCGGTGCAGAGCAGTCG
ATGGACTACGAGAAGCTGGCGTTGAACGCGGGCGGAAGCGGCAGCGGTGC
CGAGCAGGACTTAGGCATGTGCGGTGGTCAGGAGCTGCTCGATGGCAGGG
GCAAGGAGAAGGCGCGTCGCTACTGGACGCCCAGCGAGGAGGAGCGCCTG
TACGAGATCTGGGGACGCGACAACTGGCGCCTGACGCGCACCGGCAAGAA
CACCATCTTCTTTGGCCGGTGGGCCGAGGAACTGCGCGACCGGTTCGCCG
TGGACGTGAAGCCCGAGGAGATCCAGATGAAGGTCAACCAGACCAGGGCC
AAGTTCAGGCAAGTCAAAAAACAGCTGCAGGCGGATCCTTCGAGCTATGC
TACGCGCTGGAAGAAGTACGACATTATCAATCGCATCCTGAAGAACCTGC
ACAGGCCCAAGAACGCCGATCCGCTGCCGCCAGAGGCGCTGCTCAACAAC
CGCGACATGACACCGCCCCGGGATGATGCGTCCGCAGAGCAGTTGCAGCA
GCAGCCACAGCAGCAATCCGTTCAGCAGCAGCAGCAGCAAGGCTTGGGAC
TGGCCAGTGAGCCAAGCACTGCCACCTATTACAATAGCAGCAGCAATAGC
AATCACGGCAGCAGCCACAACAACAACACCAGCGGCGGAGTTAGCTTCAA
CACGGAGCTGTTTACGGACCAGTATGACGAGGTGGTCAAGCAGGAGTACG
AGGACGATGAGTACCGCTCCATTCCCTTTCAGGAGCAGTTGCAACAGTAT
TCCCCAGCCGAGCCGGCTCAGCTGCTCGAGCTGCAGACGCCACAGCAGCA
GCAACAACTGCAGCAGCAGCAGCAACAACAGCAGCAGTTCCAAACAAACT
ATGAGTCGCAATTTCAGCAGCAGCCGGCTCAATTCAATAACAACAGCGTT
ATTAGCACTGCGGCCACATCGACCGTCAACCATCAGCCCATAACGGCGGT
AGCCTATATCAATAGCAGCAATAACACCATCAGCGTGGCCACAAACGCAA
ACGGAGGCATGCCAGCGCCGGTGCCCGCACAGGTATCGGCATCGGTTCCG
GCTGCAGCTCCAGTTTCGACCACCAACAACGCCGTCGTTGGCGCCTCCCC
CGTCCCTGTGCCACGGAAGCGCGGTCGTCCATTCGGATCTGTGAATCCCC
CACACGCAGACTCGCTGGAGGCGCTCTACATGGAGGAAGTTCGGCGAAAG
AACCAGCTGCTCTACGAACAAACCAAGATATGTCGGCAGCGACTGGAGCT
GGAGGAACGCAAGGTCGACCTCATGCAGACCTTCTTCCCCAAGTGTCTTG
AGCAGCAGGCGCAGATTCTGAGCCACGTCCTTCAGCTGCAGAAGCAGCAT
CAGCATCCTACGGCCCAGCGGCCGCAGTGAACTCCTTTTCCGACTTTTCA
TAACCTCAATTTTGGACCGCAGTGCACGAACACTGGTTTTCAGATACTGG
ATTGCTGCAACATGCCGCTTCGCAGGCTGATCGGTGCCACGAAACTTAAC
AAAAAACATGCAAAACTGTTTGTAAGATTAAAAAGTAAACTTAAATAATA
AATATATTTAAATAACGAAAAAAAAAAAAAAAA

RE17389.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:13:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG7239-RA 1807 CG7239-RA 88..1807 1..1720 8600 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:18:28
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 5801836..5803096 457..1717 6275 99.8 Plus
chr2L 23010047 chr2L 5801321..5801779 1..459 2265 99.6 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:38:38 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:18:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5802770..5804034 457..1721 6325 100 Plus
2L 23513712 2L 5802255..5802713 1..459 2295 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:43:48
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5802770..5804034 457..1721 6325 100 Plus
2L 23513712 2L 5802255..5802713 1..459 2295 100 Plus
Blast to na_te.dros performed 2019-03-15 16:18:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6440..6936 649..1141 323 58.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2314..2656 638..986 310 59.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2345..2910 636..1233 263 55.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..7196 646..1134 255 55.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6719..6956 720..964 252 59.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6754..7220 636..1121 249 54.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2322..2847 594..1134 237 55.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6692..7089 652..1060 236 55.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2352..2874 732..1233 182 52.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2760..2832 714..786 176 71.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2687 737..1133 174 54.6 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3219..3345 649..786 159 63 Plus
roo 9092 roo DM_ROO 9092bp 1059..1179 647..776 151 65.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2745..2989 526..778 140 56.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2546 528..776 133 57.4 Plus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 7942..7994 740..795 119 73.2 Plus
TART-C 11124 TART-C TARTC 11124bp 9386..9438 740..795 119 73.2 Plus
invader2 5124 invader2 INVADER2 5124bp 656..725 741..809 113 64.3 Plus

RE17389.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:19:25 Download gff for RE17389.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 5801321..5801778 1..458 99 -> Plus
chr2L 5801838..5802016 459..637 100 == Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:58:45 Download gff for RE17389.complete
Subject Subject Range Query Range Percent Splice Strand
CG7239-RA 1..1380 151..1530 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:59:11 Download gff for RE17389.complete
Subject Subject Range Query Range Percent Splice Strand
CG7239-RA 1..1380 151..1530 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:00:04 Download gff for RE17389.complete
Subject Subject Range Query Range Percent Splice Strand
CG7239-RA 1..1380 151..1530 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:52:29 Download gff for RE17389.complete
Subject Subject Range Query Range Percent Splice Strand
CG7239-RA 1..1380 151..1530 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:33:27 Download gff for RE17389.complete
Subject Subject Range Query Range Percent Splice Strand
CG7239-RA 1..1380 151..1530 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:39:48 Download gff for RE17389.complete
Subject Subject Range Query Range Percent Splice Strand
CG7239-RA 1..1717 1..1717 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:59:11 Download gff for RE17389.complete
Subject Subject Range Query Range Percent Splice Strand
CG7239-RA 1..1717 1..1717 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:00:04 Download gff for RE17389.complete
Subject Subject Range Query Range Percent Splice Strand
CG7239-RA 36..1752 1..1717 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:52:30 Download gff for RE17389.complete
Subject Subject Range Query Range Percent Splice Strand
CG7239-RA 1..1717 1..1717 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:33:27 Download gff for RE17389.complete
Subject Subject Range Query Range Percent Splice Strand
CG7239-RA 36..1752 1..1717 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:19:25 Download gff for RE17389.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5802255..5802712 1..458 100 -> Plus
2L 5802772..5804030 459..1717 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:19:25 Download gff for RE17389.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5802255..5802712 1..458 100 -> Plus
2L 5802772..5804030 459..1717 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:19:25 Download gff for RE17389.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5802255..5802712 1..458 100 -> Plus
2L 5802772..5804030 459..1717 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:00:04 Download gff for RE17389.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5802255..5802712 1..458 100 -> Plus
arm_2L 5802772..5804030 459..1717 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:24:34 Download gff for RE17389.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5802255..5802712 1..458 100 -> Plus
2L 5802772..5804030 459..1717 100   Plus

RE17389.hyp Sequence

Translation from 0 to 1529

> RE17389.hyp
VDFLCGKTALGFNHSTTASHCVTRVEIAYPKATLQGYICGSRSGAGAEQS
MDYEKLALNAGGSGSGAEQDLGMCGGQELLDGRGKEKARRYWTPSEEERL
YEIWGRDNWRLTRTGKNTIFFGRWAEELRDRFAVDVKPEEIQMKVNQTRA
KFRQVKKQLQADPSSYATRWKKYDIINRILKNLHRPKNADPLPPEALLNN
RDMTPPRDDASAEQLQQQPQQQSVQQQQQQGLGLASEPSTATYYNSSSNS
NHGSSHNNNTSGGVSFNTELFTDQYDEVVKQEYEDDEYRSIPFQEQLQQY
SPAEPAQLLELQTPQQQQQLQQQQQQQQQFQTNYESQFQQQPAQFNNNSV
ISTAATSTVNHQPITAVAYINSSNNTISVATNANGGMPAPVPAQVSASVP
AAAPVSTTNNAVVGASPVPVPRKRGRPFGSVNPPHADSLEALYMEEVRRK
NQLLYEQTKICRQRLELEERKVDLMQTFFPKCLEQQAQILSHVLQLQKQH
QHPTAQRPQ*

RE17389.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:10:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG7239-PA 459 CG7239-PA 1..459 51..509 2396 100 Plus
CG15740-PB 975 CG15740-PB 423..631 213..416 168 32.8 Plus
CG32532-PD 688 CG32532-PD 107..293 210..406 166 32 Plus
Smr-PG 3607 CG4013-PG 111..316 193..424 159 29.3 Plus

RE17389.pep Sequence

Translation from 150 to 1529

> RE17389.pep
MDYEKLALNAGGSGSGAEQDLGMCGGQELLDGRGKEKARRYWTPSEEERL
YEIWGRDNWRLTRTGKNTIFFGRWAEELRDRFAVDVKPEEIQMKVNQTRA
KFRQVKKQLQADPSSYATRWKKYDIINRILKNLHRPKNADPLPPEALLNN
RDMTPPRDDASAEQLQQQPQQQSVQQQQQQGLGLASEPSTATYYNSSSNS
NHGSSHNNNTSGGVSFNTELFTDQYDEVVKQEYEDDEYRSIPFQEQLQQY
SPAEPAQLLELQTPQQQQQLQQQQQQQQQFQTNYESQFQQQPAQFNNNSV
ISTAATSTVNHQPITAVAYINSSNNTISVATNANGGMPAPVPAQVSASVP
AAAPVSTTNNAVVGASPVPVPRKRGRPFGSVNPPHADSLEALYMEEVRRK
NQLLYEQTKICRQRLELEERKVDLMQTFFPKCLEQQAQILSHVLQLQKQH
QHPTAQRPQ*

RE17389.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:32:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15581-PA 461 GF15581-PA 1..458 1..446 1343 67.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:32:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG25097-PA 468 GG25097-PA 1..468 1..459 1898 90 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:32:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10922-PA 516 GH10922-PA 1..176 1..159 678 68.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:02:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG7239-PA 459 CG7239-PA 1..459 1..459 2396 100 Plus
CG15740-PB 975 CG15740-PB 423..631 163..366 168 32.8 Plus
CG32532-PD 688 CG32532-PD 107..293 160..356 166 32 Plus
Smr-PG 3607 CG4013-PG 111..316 143..374 159 29.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:32:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13346-PA 509 GI13346-PA 31..492 9..446 1146 64.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:32:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19034-PA 464 GL19034-PA 22..463 20..459 1180 60.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:33:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20204-PA 464 GA20204-PA 22..448 20..453 1181 61.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:33:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18573-PA 458 GM18573-PA 1..458 1..459 1728 85.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:33:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23363-PA 392 GD23363-PA 1..190 1..189 916 95.8 Plus
Dsim\GD23363-PA 392 GD23363-PA 187..392 253..459 822 94.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:33:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11986-PA 527 GJ11986-PA 1..510 1..446 1278 59.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:33:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14695-PA 478 GK14695-PA 30..463 18..448 1315 65.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:33:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25647-PA 471 GE25647-PA 1..471 1..459 1804 85.6 Plus