BDGP Sequence Production Resources |
Search the DGRC for RE17477
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 174 |
Well: | 77 |
Vector: | pFlc-1 |
Associated Gene/Transcript | smp-30-RA |
Protein status: | RE17477.pep: gold |
Sequenced Size: | 1040 |
Gene | Date | Evidence |
---|---|---|
CG7390 | 2001-12-14 | Blastp of sequenced clone |
CG7390 | 2002-01-01 | Sim4 clustering to Release 2 |
CG7390 | 2003-01-01 | Sim4 clustering to Release 3 |
smp-30 | 2008-04-29 | Release 5.5 accounting |
smp-30 | 2008-08-15 | Release 5.9 accounting |
smp-30 | 2008-12-18 | 5.12 accounting |
1040 bp (1040 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071130
> RE17477.complete AGTTTGCAAACGTTAGCTGACCGAGAAGTATTCAACGGTTTCTTTAAGAT GTCATACAAGGTTGAAGCTGTTCCCGATTCCTACGCCGCCCTGGGCGAGG GACCCCACTGGGATGTTGATCGCCAGAGTCTGTACTACGTGGACCTCGAA TCCGCCGGCATTAATCGTTATGATTTCAAGCAGAACAAAGTGTACAGGGC TAAAATCGAGGGCGAGATATTTGCATCGTTCATTCTGCCGGTTGAGAACA AACCGCAGGAGTTTGCCGTAGGATGCGGTCTTCGTACGGTCATCGTCCAG TGGGATGGAGTCTCCGCAGTGGCCAAGGTCACTCGCACCCTGTTCGAGGT GCAGCCGGACCTGAAGGAAAACCGCCTTAATGATGCCAAAACCGATCCCA ATGGCCGTTTTTACGGTGGCACCATGGCCGACAGTGGCGACATATTCACC CAATGGAAGGGTGAGCTCTACAGCTGGCAGGCCGGTGGACAGCCCAACGC TATCCGTAGCAAGGTGGGCATATCCAATGGCCTGGCCTGGGATGTCAAGG CCAAGAAGTTCTACTTCATCGACACCAACAACCACGAGGTATTGGCCTAT GACTACAATCAGAGCACCGGCGCCGTAAGCAACCCAAAGGTCATCTTCGA TCTGAGGAAGATTCGGCCCGAAGGACCATTGTTCCCTGATGGCATGACCG TAGACACCGATGGCAATATCTACGTGGCCACCTTCAATGGTGGCACCGTC TTCAAGGTCAATCCAAGCACCGGTAAAATTCTGCTGGAGATCAAAATTCC AACCACCCAAATCACCTCGGTGGCTTTTGGAGGTCCCAATTTGGATATTT TGTATGTGACAACCGCCAACAAGTTCGACCAGCCAAAACCAGCTGGTACC ACCTTCCAGGTCACTGGGCTCAATGCCAAGGGTTACGCCGGCGTTAATTT GAAGATCTAGATTATAGACTACTTGTATAATAGCATTTAATTAAATAATC AAACATTTACTTGTATACTGAACTAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 10571162..10571886 | 767..43 | 3565 | 99.4 | Minus |
chr3R | 27901430 | chr3R | 10570847..10571105 | 1024..766 | 1235 | 98.5 | Minus |
chrX | 22417052 | chrX | 11907066..11907783 | 47..764 | 455 | 70.9 | Plus |
chr3R | 27901430 | chr3R | 10572030..10572077 | 48..1 | 240 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 14746407..14747131 | 767..43 | 3610 | 99.9 | Minus |
3R | 32079331 | 3R | 14746090..14746350 | 1026..766 | 1305 | 100 | Minus |
X | 23542271 | X | 12016001..12016718 | 47..764 | 485 | 71.2 | Plus |
3R | 32079331 | 3R | 14747274..14747321 | 48..1 | 240 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 14487238..14487962 | 767..43 | 3610 | 99.8 | Minus |
3R | 31820162 | 3R | 14486921..14487181 | 1026..766 | 1305 | 100 | Minus |
X | 23527363 | X | 12024099..12024195 | 47..143 | 260 | 84.5 | Plus |
3R | 31820162 | 3R | 14488105..14488152 | 48..1 | 240 | 100 | Minus |
X | 23527363 | X | 12024566..12024642 | 514..590 | 220 | 85.7 | Plus |
X | 23527363 | X | 12024680..12024816 | 628..764 | 190 | 78.2 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 10570847..10571103 | 768..1024 | 98 | <- | Minus |
chr3R | 10571162..10571880 | 49..767 | 99 | <- | Minus |
chr3R | 10572030..10572077 | 1..48 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
smp-30-RB | 1..912 | 49..960 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
smp-30-RB | 1..912 | 49..960 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
smp-30-RB | 1..912 | 49..960 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
smp-30-RB | 1..912 | 49..960 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
smp-30-RB | 1..912 | 49..960 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
smp-30-RB | 1..1024 | 1..1024 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
smp-30-RB | 1..1024 | 1..1024 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
smp-30-RA | 5..1028 | 1..1024 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
smp-30-RB | 1..1024 | 1..1024 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
smp-30-RA | 5..1028 | 1..1024 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 14746092..14746348 | 768..1024 | 100 | <- | Minus |
3R | 14746407..14747125 | 49..767 | 100 | <- | Minus |
3R | 14747274..14747321 | 1..48 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 14746092..14746348 | 768..1024 | 100 | <- | Minus |
3R | 14746407..14747125 | 49..767 | 100 | <- | Minus |
3R | 14747274..14747321 | 1..48 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 14746092..14746348 | 768..1024 | 100 | <- | Minus |
3R | 14746407..14747125 | 49..767 | 100 | <- | Minus |
3R | 14747274..14747321 | 1..48 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 10571814..10572070 | 768..1024 | 100 | <- | Minus |
arm_3R | 10572129..10572847 | 49..767 | 100 | <- | Minus |
arm_3R | 10572996..10573043 | 1..48 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 14486923..14487179 | 768..1024 | 100 | <- | Minus |
3R | 14487238..14487956 | 49..767 | 100 | <- | Minus |
3R | 14488105..14488152 | 1..48 | 100 | Minus |
Translation from 0 to 959
> RE17477.hyp SLQTLADREVFNGFFKMSYKVEAVPDSYAALGEGPHWDVDRQSLYYVDLE SAGINRYDFKQNKVYRAKIEGEIFASFILPVENKPQEFAVGCGLRTVIVQ WDGVSAVAKVTRTLFEVQPDLKENRLNDAKTDPNGRFYGGTMADSGDIFT QWKGELYSWQAGGQPNAIRSKVGISNGLAWDVKAKKFYFIDTNNHEVLAY DYNQSTGAVSNPKVIFDLRKIRPEGPLFPDGMTVDTDGNIYVATFNGGTV FKVNPSTGKILLEIKIPTTQITSVAFGGPNLDILYVTTANKFDQPKPAGT TFQVTGLNAKGYAGVNLKI*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
smp-30-PC | 306 | CG7390-PC | 3..306 | 16..319 | 1600 | 99.7 | Plus |
smp-30-PD | 303 | CG7390-PD | 1..303 | 17..319 | 1599 | 100 | Plus |
smp-30-PB | 303 | CG7390-PB | 1..303 | 17..319 | 1599 | 100 | Plus |
smp-30-PA | 303 | CG7390-PA | 1..303 | 17..319 | 1599 | 100 | Plus |
regucalcin-PB | 303 | CG1803-PB | 1..303 | 17..319 | 1173 | 71.9 | Plus |
Translation from 48 to 959
> RE17477.pep MSYKVEAVPDSYAALGEGPHWDVDRQSLYYVDLESAGINRYDFKQNKVYR AKIEGEIFASFILPVENKPQEFAVGCGLRTVIVQWDGVSAVAKVTRTLFE VQPDLKENRLNDAKTDPNGRFYGGTMADSGDIFTQWKGELYSWQAGGQPN AIRSKVGISNGLAWDVKAKKFYFIDTNNHEVLAYDYNQSTGAVSNPKVIF DLRKIRPEGPLFPDGMTVDTDGNIYVATFNGGTVFKVNPSTGKILLEIKI PTTQITSVAFGGPNLDILYVTTANKFDQPKPAGTTFQVTGLNAKGYAGVN LKI*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF18129-PA | 305 | GF18129-PA | 2..305 | 1..303 | 1283 | 78 | Plus |
Dana\GF18130-PA | 577 | GF18130-PA | 274..577 | 1..303 | 1259 | 76.3 | Plus |
Dana\GF19376-PA | 303 | GF19376-PA | 1..303 | 1..303 | 1165 | 71 | Plus |
Dana\GF18130-PA | 577 | GF18130-PA | 1..275 | 1..289 | 1003 | 65.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG21077-PA | 303 | GG21077-PA | 1..303 | 1..303 | 1512 | 93.4 | Plus |
Dere\GG17702-PA | 318 | GG17702-PA | 16..318 | 1..303 | 1170 | 71.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH24165-PA | 421 | GH24165-PA | 119..421 | 1..303 | 1144 | 68.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
smp-30-PD | 303 | CG7390-PD | 1..303 | 1..303 | 1599 | 100 | Plus |
smp-30-PC | 306 | CG7390-PC | 4..306 | 1..303 | 1599 | 100 | Plus |
smp-30-PB | 303 | CG7390-PB | 1..303 | 1..303 | 1599 | 100 | Plus |
smp-30-PA | 303 | CG7390-PA | 1..303 | 1..303 | 1599 | 100 | Plus |
regucalcin-PB | 303 | CG1803-PB | 1..303 | 1..303 | 1173 | 71.9 | Plus |
regucalcin-PC | 303 | CG1803-PC | 1..303 | 1..303 | 1173 | 71.9 | Plus |
regucalcin-PA | 303 | CG1803-PA | 1..303 | 1..303 | 1173 | 71.9 | Plus |
regucalcin-PD | 319 | CG1803-PD | 17..319 | 1..303 | 1173 | 71.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI21765-PA | 334 | GI21765-PA | 32..334 | 1..303 | 1168 | 71 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL23668-PA | 303 | GL23668-PA | 1..303 | 1..303 | 1345 | 82.2 | Plus |
Dper\GL20270-PA | 287 | GL20270-PA | 23..286 | 1..302 | 884 | 58.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA26692-PA | 303 | GA26692-PA | 1..303 | 1..303 | 1345 | 82.2 | Plus |
Dpse\GA14770-PA | 325 | GA14770-PA | 23..324 | 1..302 | 1167 | 71.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM25827-PA | 303 | GM25827-PA | 1..303 | 1..303 | 1521 | 94.7 | Plus |
Dsec\GM13249-PA | 315 | GM13249-PA | 22..315 | 10..303 | 1133 | 71.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20401-PA | 303 | GD20401-PA | 4..302 | 1..299 | 1517 | 95 | Plus |
Dsim\GD17058-PA | 348 | GD17058-PA | 46..348 | 1..303 | 1171 | 71.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ18538-PA | 303 | GJ18538-PA | 1..303 | 1..303 | 1163 | 71 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK11687-PA | 601 | GK11687-PA | 1..300 | 1..300 | 1228 | 78 | Plus |
Dwil\GK10081-PA | 303 | GK10081-PA | 1..303 | 1..303 | 1168 | 69.6 | Plus |
Dwil\GK11687-PA | 601 | GK11687-PA | 299..601 | 1..303 | 1138 | 70.3 | Plus |