BDGP Sequence Production Resources |
Search the DGRC for RE17490
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 174 |
Well: | 90 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG9249-RB |
Protein status: | RE17490.pep: gold |
Sequenced Size: | 984 |
Gene | Date | Evidence |
---|---|---|
CG9249 | 2003-01-01 | Sim4 clustering to Release 3 |
CG9249 | 2004-10-27 | Blastp of sequenced clone |
CG9249 | 2008-04-29 | Release 5.5 accounting |
CG9249 | 2008-08-15 | Release 5.9 accounting |
CG9249 | 2008-12-18 | 5.12 accounting |
984 bp (984 high quality bases) assembled on 2004-10-27
GenBank Submission: BT021305
> RE17490.complete ATCAACGTTTGTTTTTCTCGCAAAAATGATGCGAAATGCCTTGTTAGTAA GCGGCAAACTGAGACATTTGCTATCCTGTTCTATCGGGCGAAATTCGACT AGAAGCAGCAGCACAGCGAAGTCGTTGGATGCCGGCACCCAAAAGGAAGT GCGGCACCATGAGAATCACGCCTCGGAGTGGTGGAATCAAAATGGAACCA TGGGTGCTCTACATGCCCTGAATGAGATTAGGGTTCCCTTTATCAGAGAT GGCATCGTTTCGCGTGGCACTGTGAAGCCAGGTTACGTAAATACCACCAA AGTGTTGTTGGGTCAAAATATTCTGGAGGTCGGATGTGGCGGAGGATTGC TTACGGAACACTTGGCGCGCCTGGGTGCCCAGGTGGCTGGCATAGATCTT GGCGAGAAGTTAATAGAAGCTGCTCGCGAGCATCTCAAATGCTCCAGTCC GGAGTTGGCCAGCAATGTGGTGTACAAAATTGAGCCGGTGGATCAGCATG CCAAGGCCAATTGCGAATGCTATGATGCGGTGATAGTGTCTGAAGTTCTG GAGCACGTCAAAGATAAAGTGTCCCTGCTGGAGGCCAGTGTACGCAGCCT AAAGCCTGGAGGATCCATCTTTATCACCACTTTGAACAAAACCATACCCA GTTGGTTCGGTGGCGTGTTACTCAGCGAGTATGTTCTCAATCTGGTGCCC AGGGGAACGCACCACTGGGACAAAATGATTTCGCCCTTGGACGTTCAGCG CATCTTGGATACGATGAACTGTCAGACGGTGTTGGTAAATGGAAGCACCT ACGACTTTTGGAGCAACACCTGGCGATGGATCAACAACAACCAGATGTGC TACGCCTTGCAGGCGGTGAAACAAGCACAGCGCGAGTACAATTGAATTCG TATATTTATTTAACTAAAAGCTAAGTCACGAGTGTAACAACTAAGTAGTA AACTATTCGTCACCCGAGAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG9249-RB | 1163 | CG9249-RB | 117..1084 | 1..968 | 4840 | 100 | Plus |
CG9249-RA | 1140 | CG9249-RA | 31..794 | 1..764 | 3820 | 100 | Plus |
CG9249-RA | 1140 | CG9249-RA | 858..1061 | 765..968 | 1020 | 100 | Plus |
Mpp6-RA | 812 | Mpp6-RA | 571..774 | 968..765 | 1020 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 21156216..21156750 | 764..230 | 2660 | 99.8 | Minus |
chr2L | 23010047 | chr2L | 21155949..21156152 | 968..765 | 1020 | 100 | Minus |
chr2L | 23010047 | chr2L | 21156808..21156986 | 232..54 | 895 | 100 | Minus |
chr2L | 23010047 | chr2L | 21157040..21157093 | 54..1 | 270 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 21157711..21158245 | 764..230 | 2675 | 100 | Minus |
2L | 23513712 | 2L | 21157444..21157647 | 968..765 | 1020 | 100 | Minus |
2L | 23513712 | 2L | 21158303..21158481 | 232..54 | 895 | 100 | Minus |
2L | 23513712 | 2L | 21158535..21158588 | 54..1 | 270 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 21157711..21158245 | 764..230 | 2675 | 100 | Minus |
2L | 23513712 | 2L | 21157444..21157647 | 968..765 | 1020 | 100 | Minus |
2L | 23513712 | 2L | 21158303..21158481 | 232..54 | 895 | 100 | Minus |
2L | 23513712 | 2L | 21158535..21158588 | 54..1 | 270 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 21157040..21157093 | 1..54 | 100 | Minus | |
chr2L | 21155949..21156152 | 765..968 | 100 | <- | Minus |
chr2L | 21156216..21156748 | 232..764 | 99 | <- | Minus |
chr2L | 21156809..21156985 | 55..231 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9249-RA | 803..933 | 765..895 | 100 | Plus | |
CG9249-RA | 1..739 | 26..764 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9249-RB | 1..870 | 26..895 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9249-RB | 1..870 | 26..895 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9249-RA | 803..933 | 765..895 | 100 | Plus | |
CG9249-RA | 1..739 | 26..764 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9249-RB | 1..870 | 26..895 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9249-RA | 1..764 | 1..764 | 100 | -> | Plus |
CG9249-RA | 828..1031 | 765..968 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9249-RB | 1..968 | 1..968 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9249-RB | 24..991 | 1..968 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9249-RA | 1..764 | 1..764 | 100 | -> | Plus |
CG9249-RA | 828..1031 | 765..968 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9249-RB | 24..991 | 1..968 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 21157444..21157647 | 765..968 | 100 | <- | Minus |
2L | 21157711..21158243 | 232..764 | 100 | <- | Minus |
2L | 21158304..21158480 | 55..231 | 100 | <- | Minus |
2L | 21158535..21158588 | 1..54 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 21157444..21157647 | 765..968 | 100 | <- | Minus |
2L | 21157711..21158243 | 232..764 | 100 | <- | Minus |
2L | 21158304..21158480 | 55..231 | 100 | <- | Minus |
2L | 21158535..21158588 | 1..54 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 21157444..21157647 | 765..968 | 100 | <- | Minus |
2L | 21157711..21158243 | 232..764 | 100 | <- | Minus |
2L | 21158304..21158480 | 55..231 | 100 | <- | Minus |
2L | 21158535..21158588 | 1..54 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 21157444..21157647 | 765..968 | 100 | <- | Minus |
arm_2L | 21157711..21158243 | 232..764 | 100 | <- | Minus |
arm_2L | 21158304..21158480 | 55..231 | 100 | <- | Minus |
arm_2L | 21158535..21158588 | 1..54 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 21157711..21158243 | 232..764 | 100 | <- | Minus |
2L | 21158304..21158480 | 55..231 | 100 | <- | Minus |
2L | 21158535..21158588 | 1..54 | 100 | Minus | |
2L | 21157444..21157647 | 765..968 | 100 | <- | Minus |
Translation from 0 to 894
> RE17490.hyp STFVFLAKMMRNALLVSGKLRHLLSCSIGRNSTRSSSTAKSLDAGTQKEV RHHENHASEWWNQNGTMGALHALNEIRVPFIRDGIVSRGTVKPGYVNTTK VLLGQNILEVGCGGGLLTEHLARLGAQVAGIDLGEKLIEAAREHLKCSSP ELASNVVYKIEPVDQHAKANCECYDAVIVSEVLEHVKDKVSLLEASVRSL KPGGSIFITTLNKTIPSWFGGVLLSEYVLNLVPRGTHHWDKMISPLDVQR ILDTMNCQTVLVNGSTYDFWSNTWRWINNNQMCYALQAVKQAQREYN*
Translation from 1 to 894
> RE17490.pep STFVFLAKMMRNALLVSGKLRHLLSCSIGRNSTRSSSTAKSLDAGTQKEV RHHENHASEWWNQNGTMGALHALNEIRVPFIRDGIVSRGTVKPGYVNTTK VLLGQNILEVGCGGGLLTEHLARLGAQVAGIDLGEKLIEAAREHLKCSSP ELASNVVYKIEPVDQHAKANCECYDAVIVSEVLEHVKDKVSLLEASVRSL KPGGSIFITTLNKTIPSWFGGVLLSEYVLNLVPRGTHHWDKMISPLDVQR ILDTMNCQTVLVNGSTYDFWSNTWRWINNNQMCYALQAVKQAQREYN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF19699-PA | 259 | GF19699-PA | 1..259 | 17..272 | 1056 | 76.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG21520-PA | 289 | GG21520-PA | 1..289 | 9..297 | 1420 | 90.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH13219-PA | 295 | GH13219-PA | 1..291 | 9..296 | 1051 | 67 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG9249-PB | 289 | CG9249-PB | 1..289 | 9..297 | 1519 | 100 | Plus |
CG9249-PA | 310 | CG9249-PA | 1..310 | 9..297 | 1483 | 92.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI14517-PA | 286 | GI14517-PA | 1..284 | 9..295 | 1015 | 66.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL25862-PA | 244 | GL25862-PA | 1..242 | 14..254 | 955 | 75.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA25472-PA | 239 | GA25472-PA | 1..237 | 19..254 | 950 | 76.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM23272-PA | 259 | GM23272-PA | 1..245 | 9..254 | 1212 | 93.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD21650-PA | 288 | GD21650-PA | 1..288 | 9..297 | 1452 | 94.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ16285-PA | 293 | GJ16285-PA | 1..291 | 9..295 | 1056 | 67.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK21052-PA | 197 | GK21052-PA | 1..188 | 67..254 | 747 | 75 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE13000-PA | 289 | GE13000-PA | 1..289 | 9..297 | 1378 | 87.9 | Plus |