Clone RE17513 Report

Search the DGRC for RE17513

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:175
Well:13
Vector:pFlc-1
Associated Gene/TranscriptCG8412-RA
Protein status:RE17513.pep: gold
Preliminary Size:2369
Sequenced Size:2541

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8412 2001-12-14 Blastp of sequenced clone
CG8412 2002-01-01 Sim4 clustering to Release 2
CG8412 2003-01-01 Sim4 clustering to Release 3
CG8412 2008-04-29 Release 5.5 accounting
CG8412 2008-08-15 Release 5.9 accounting
CG8412 2008-12-18 5.12 accounting

Clone Sequence Records

RE17513.complete Sequence

2541 bp (2541 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071132

> RE17513.complete
GTTGTTTTTCTTGGATTTGTTTTTGTTGTGCTTGCTTTTCTGCCTCCGAC
GTGGAGCGATCTATTTATATATCTATTTTGGTTTATTTTGGAACCACAAA
TTCTCTTCGGCATAGGAAAAATATATATGCCTAGGCATTGACACTTTTTG
TGAGACATTCAAACACTTAGTCAAAGAAAGGTGGCTAGATATCGACATTG
TGCAACGCCGGCTTCGATTGGGAAATCTTCGTCAGATACCATCGCGCAGA
AATTTATAGATTTTCCAACGGACTAGAATATATAGATATCGGTGTCAAAA
CAAATATGGCCATTATGTAACGCCCCGATTCCTGTCCAGCACACTTTGCA
CACCAGCGACACCCGACAGCCAAAACCGCCCGCAACATGGACATCCTAAT
CTTTGTGACGGCGGCGGCCCATTTGGTCTACACGCCCTTTACGAAAGTGG
AGGAGAGCTTCAATCTCCAGGCCATGCACGACATTCTTTATCTGCGAAAC
AACTTTACGCAGTACGATCACCATGACTATCCGGGCGTGGTTCCACGCAC
CTTCATCGGCCCATTGGTGGTGTCCATTATCTCAGCCCCGTTTGTCCTGC
TCTTCGAGACCCTTAGCATCAACAAGTTCTGGGCCCAATATGTAGTGCGC
CTTGTCTTGGCTGGGGCCATCTCTGTGGCCTGGAACAGCCTACGGCAGGC
GGTGACAAAGATTTACGGAGTTGAGGTCCGCCTGTGGTTCACAGCCATCA
CTATTACGCAGTTCCACTTCATGTTCTACATGACTAGGCCTCTGCCCAAT
ATCTTTGCCCTGCCGATAGTGCTCTTTGCCATTGCCTATTGGCTACGCGA
CCAGCACAAGCCATTCATCATCTGCTCTGGTATATCCATTCTCGTCTTTC
GATCCGAGTTGGCGTTATTTTTGGGTATTTTGCTGGTGGTGAGCCTCCTA
CGGCGAAAAGTTTCCATTGACGGGCTACTCAAAGTTGCACTGCCGGCGGG
CGTCTGCATTTTGGCTGCCACAGTGCTGGTGGACTCGTTCTTTTGGCGCC
GCCTGCTTTGGCCCGAGGGTGAGGTGCTATGGTACAACACCGTACTCAAT
AAGAGCTCCAACTGGGGTACCTCGCCTTTTCTATGGTACTTTTACTCCGC
CCTGCCACGTGCCATGGGTGCATCGCTGGTGCTCGTGCCCATCGGCGTCG
CATTGGAGCCACGTATTCGGCCATTGGTCCTGTCGGCTCTCCTCTTTGTC
CTTTTGTACTCCATTCTGCCGCACAAGGAGCTGCGCTTCATCATCTACGT
GTTTCCAGTTCTCAACATTGCTGCGGCTTGCGCATGCCAACGAATTTGGA
TGAACAGCGCCAAGTCAACGTGGCATAGCTTTCTGGCGCTCGCCTGTGGA
GCCCATCTCCTGCTAAATGTCTTTATAACGCTCTTCCTGCTTGTCATTTC
GGGCACCAACTATCCGGGCGGAGCAGCCCTCTCCCGATTGCATCGCTTGG
AAGCTGGCACCTCAAACGTTTCCGTTCACATTTCCAACTTGGCCGCCCAG
AGCGGCGTGTCGCGTTTTATGGAAATAAATAATGAATGGACTTACAGCAA
GGACGAGACAATGAACTATACCCAGGCGGATTTGGTTGCATACACACATC
TTTTGGTCGAGGCGAAGAACAAGCAAAACACTGAACTATGGGCATCGCTC
CAAAACGAATTCGATACGCTAGAGTTTATTGACTGCTTCAACAGCATCGG
CATTCAATACAATTCTCTGCTGCCGGTGCGAATAAAGACGAAGCCTTGCA
TTGGTATACTTAAAAAGAGACCAGTGGCTCCAAAAGAGGCATCAAAAACA
AAAGAGAAAATAGCAAAAACTAAGACATACCCGGTGGAAAAAGAAACGTT
ATTAGCTCCTGTTAAAGAATTTCCAAAAGTGATAGGAGATCCGAAAATGA
AATCCAGGTTACAAGTCGATGCGGATGATGATGATGGCATCGTGTCCACT
GTGGAGGAAATGTCGCTAGAACTGGAAACGGATACTGAGCCCCATGCTGG
GGCAGAGACCATCGAAACGCCCTTGAAGGAGATCAATTTCCAGGAGCTGA
GAACCCTCGCCTTGGGACAGGCAACCAAGAAGTCGAGAGCAGCCACCAAG
ATGAAGATTCGACAAATTATCGAGCAGCACTACCGCGCCAAGGGCAAACA
AATCGAAAACGACTCCGCAGAGACCCAAAAAACGCAAGGAAAGGCTGGAT
TACGGCAATCCGTAAAGTCCATCATAAAGCAGGAGAAGATCAAGGAAATG
ATCGAGCAGATCGCTACGATGGATCTGACACGCATCTGCGATTTGGAAAG
GACTTCGACCAAAGATTGCTTAAAACAGGTCATAGACAAAATAGATGACA
GCGAGGGTTTGAAATCCAAATGACAAAACCTATCACACTTTAAACTGTTT
TATTAAATTAAGCTAAGCGTTTGTTAATGGCACAGTTGTAAAAATTTAAA
ATAAAAGCAATAATAAAAGCGAACCAAAAAAAAAAAAAAAA

RE17513.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:42:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG8412-RA 2609 CG8412-RA 1..2529 1..2529 12630 99.9 Plus
CG8412.a 2696 CG8412.a 172..2694 1..2523 12615 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:38:11
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 5583970..5585147 1346..2523 5815 99.6 Plus
chr3R 27901430 chr3R 5582329..5582840 1..512 2560 100 Plus
chr3R 27901430 chr3R 5583538..5583910 973..1345 1865 100 Plus
chr3R 27901430 chr3R 5583089..5583265 643..819 885 100 Plus
chr3R 27901430 chr3R 5583330..5583486 818..974 785 100 Plus
chr3R 27901430 chr3R 5582898..5583033 510..645 680 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:38:46 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:38:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9758134..9759317 1346..2529 5905 99.9 Plus
3R 32079331 3R 9756493..9757004 1..512 2560 100 Plus
3R 32079331 3R 9757702..9758074 973..1345 1865 100 Plus
3R 32079331 3R 9757253..9757429 643..819 885 100 Plus
3R 32079331 3R 9757494..9757650 818..974 785 100 Plus
3R 32079331 3R 9757062..9757197 510..645 680 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:09:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 9498965..9500148 1346..2529 5905 99.9 Plus
3R 31820162 3R 9497324..9497835 1..512 2560 100 Plus
3R 31820162 3R 9498533..9498905 973..1345 1865 100 Plus
3R 31820162 3R 9498084..9498260 643..819 885 100 Plus
3R 31820162 3R 9498325..9498481 818..974 785 100 Plus
3R 31820162 3R 9497893..9498028 510..645 680 100 Plus
Blast to na_te.dros performed on 2019-03-15 22:38:10 has no hits.

RE17513.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:39:15 Download gff for RE17513.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 5582329..5582840 1..512 100 -> Plus
chr3R 5582901..5583033 513..645 100 -> Plus
chr3R 5583092..5583265 646..819 100 -> Plus
chr3R 5583332..5583485 820..973 100 -> Plus
chr3R 5583539..5583910 974..1345 100 -> Plus
chr3R 5583970..5585149 1346..2525 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:58:53 Download gff for RE17513.complete
Subject Subject Range Query Range Percent Splice Strand
CG8412-RA 1..2037 387..2423 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:08:33 Download gff for RE17513.complete
Subject Subject Range Query Range Percent Splice Strand
CG8412-RA 1..2037 387..2423 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:28:09 Download gff for RE17513.complete
Subject Subject Range Query Range Percent Splice Strand
CG8412-RA 1..2037 387..2423 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:32:57 Download gff for RE17513.complete
Subject Subject Range Query Range Percent Splice Strand
CG8412-RA 1..2037 387..2423 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:31:08 Download gff for RE17513.complete
Subject Subject Range Query Range Percent Splice Strand
CG8412-RA 1..2037 387..2423 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:37:45 Download gff for RE17513.complete
Subject Subject Range Query Range Percent Splice Strand
CG8412-RA 1..2525 1..2525 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:08:33 Download gff for RE17513.complete
Subject Subject Range Query Range Percent Splice Strand
CG8412-RA 1..2525 1..2525 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:28:09 Download gff for RE17513.complete
Subject Subject Range Query Range Percent Splice Strand
CG8412-RA 3..2527 1..2525 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:32:57 Download gff for RE17513.complete
Subject Subject Range Query Range Percent Splice Strand
CG8412-RA 1..2525 1..2525 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:31:08 Download gff for RE17513.complete
Subject Subject Range Query Range Percent Splice Strand
CG8412-RA 3..2527 1..2525 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:39:15 Download gff for RE17513.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9757496..9757649 820..973 100 -> Plus
3R 9756493..9757004 1..512 100 -> Plus
3R 9757065..9757197 513..645 100 -> Plus
3R 9757256..9757429 646..819 100 -> Plus
3R 9757703..9758074 974..1345 100 -> Plus
3R 9758134..9759313 1346..2525 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:39:15 Download gff for RE17513.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9757496..9757649 820..973 100 -> Plus
3R 9756493..9757004 1..512 100 -> Plus
3R 9757065..9757197 513..645 100 -> Plus
3R 9757256..9757429 646..819 100 -> Plus
3R 9757703..9758074 974..1345 100 -> Plus
3R 9758134..9759313 1346..2525 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:39:15 Download gff for RE17513.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9757496..9757649 820..973 100 -> Plus
3R 9756493..9757004 1..512 100 -> Plus
3R 9757065..9757197 513..645 100 -> Plus
3R 9757256..9757429 646..819 100 -> Plus
3R 9757703..9758074 974..1345 100 -> Plus
3R 9758134..9759313 1346..2525 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:28:09 Download gff for RE17513.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5583425..5583796 974..1345 100 -> Plus
arm_3R 5582215..5582726 1..512 100 -> Plus
arm_3R 5582787..5582919 513..645 100 -> Plus
arm_3R 5582978..5583151 646..819 100 -> Plus
arm_3R 5583218..5583371 820..973 100 -> Plus
arm_3R 5583856..5585035 1346..2525 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:09:46 Download gff for RE17513.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9498327..9498480 820..973 100 -> Plus
3R 9497324..9497835 1..512 100 -> Plus
3R 9497896..9498028 513..645 100 -> Plus
3R 9498087..9498260 646..819 100 -> Plus
3R 9498534..9498905 974..1345 100 -> Plus
3R 9498965..9500144 1346..2525 99   Plus

RE17513.hyp Sequence

Translation from 386 to 2422

> RE17513.hyp
MDILIFVTAAAHLVYTPFTKVEESFNLQAMHDILYLRNNFTQYDHHDYPG
VVPRTFIGPLVVSIISAPFVLLFETLSINKFWAQYVVRLVLAGAISVAWN
SLRQAVTKIYGVEVRLWFTAITITQFHFMFYMTRPLPNIFALPIVLFAIA
YWLRDQHKPFIICSGISILVFRSELALFLGILLVVSLLRRKVSIDGLLKV
ALPAGVCILAATVLVDSFFWRRLLWPEGEVLWYNTVLNKSSNWGTSPFLW
YFYSALPRAMGASLVLVPIGVALEPRIRPLVLSALLFVLLYSILPHKELR
FIIYVFPVLNIAAACACQRIWMNSAKSTWHSFLALACGAHLLLNVFITLF
LLVISGTNYPGGAALSRLHRLEAGTSNVSVHISNLAAQSGVSRFMEINNE
WTYSKDETMNYTQADLVAYTHLLVEAKNKQNTELWASLQNEFDTLEFIDC
FNSIGIQYNSLLPVRIKTKPCIGILKKRPVAPKEASKTKEKIAKTKTYPV
EKETLLAPVKEFPKVIGDPKMKSRLQVDADDDDGIVSTVEEMSLELETDT
EPHAGAETIETPLKEINFQELRTLALGQATKKSRAATKMKIRQIIEQHYR
AKGKQIENDSAETQKTQGKAGLRQSVKSIIKQEKIKEMIEQIATMDLTRI
CDLERTSTKDCLKQVIDKIDDSEGLKSK*

RE17513.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:15:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG8412-PA 678 CG8412-PA 1..678 1..678 3467 100 Plus

RE17513.pep Sequence

Translation from 386 to 2422

> RE17513.pep
MDILIFVTAAAHLVYTPFTKVEESFNLQAMHDILYLRNNFTQYDHHDYPG
VVPRTFIGPLVVSIISAPFVLLFETLSINKFWAQYVVRLVLAGAISVAWN
SLRQAVTKIYGVEVRLWFTAITITQFHFMFYMTRPLPNIFALPIVLFAIA
YWLRDQHKPFIICSGISILVFRSELALFLGILLVVSLLRRKVSIDGLLKV
ALPAGVCILAATVLVDSFFWRRLLWPEGEVLWYNTVLNKSSNWGTSPFLW
YFYSALPRAMGASLVLVPIGVALEPRIRPLVLSALLFVLLYSILPHKELR
FIIYVFPVLNIAAACACQRIWMNSAKSTWHSFLALACGAHLLLNVFITLF
LLVISGTNYPGGAALSRLHRLEAGTSNVSVHISNLAAQSGVSRFMEINNE
WTYSKDETMNYTQADLVAYTHLLVEAKNKQNTELWASLQNEFDTLEFIDC
FNSIGIQYNSLLPVRIKTKPCIGILKKRPVAPKEASKTKEKIAKTKTYPV
EKETLLAPVKEFPKVIGDPKMKSRLQVDADDDDGIVSTVEEMSLELETDT
EPHAGAETIETPLKEINFQELRTLALGQATKKSRAATKMKIRQIIEQHYR
AKGKQIENDSAETQKTQGKAGLRQSVKSIIKQEKIKEMIEQIATMDLTRI
CDLERTSTKDCLKQVIDKIDDSEGLKSK*

RE17513.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:04:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23035-PA 688 GF23035-PA 1..688 1..678 2835 79.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:04:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17092-PA 678 GG17092-PA 1..678 1..678 3324 93.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:04:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17417-PA 672 GH17417-PA 1..672 1..678 2713 75.7 Plus
Dgri\GH17379-PA 625 GH17379-PA 157..442 85..355 158 25.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:41:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG8412-PA 678 CG8412-PA 1..678 1..678 3467 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:04:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22746-PA 619 GI22746-PA 1..613 1..671 2628 74.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:04:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24301-PA 685 GL24301-PA 3..685 1..678 2770 78.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:04:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21058-PA 685 GA21058-PA 3..685 1..678 2773 79.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:04:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23833-PA 678 GM23833-PA 1..678 1..678 3529 97.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:04:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18643-PA 631 GD18643-PA 1..631 1..678 3244 90.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:04:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22748-PA 690 GJ22748-PA 1..685 1..672 2659 74.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:04:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11961-PA 683 GK11961-PA 1..682 1..678 2735 76.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:04:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25981-PA 678 GE25981-PA 1..678 1..678 3336 93.8 Plus