BDGP Sequence Production Resources |
Search the DGRC for RE17513
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 175 |
Well: | 13 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG8412-RA |
Protein status: | RE17513.pep: gold |
Preliminary Size: | 2369 |
Sequenced Size: | 2541 |
Gene | Date | Evidence |
---|---|---|
CG8412 | 2001-12-14 | Blastp of sequenced clone |
CG8412 | 2002-01-01 | Sim4 clustering to Release 2 |
CG8412 | 2003-01-01 | Sim4 clustering to Release 3 |
CG8412 | 2008-04-29 | Release 5.5 accounting |
CG8412 | 2008-08-15 | Release 5.9 accounting |
CG8412 | 2008-12-18 | 5.12 accounting |
2541 bp (2541 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071132
> RE17513.complete GTTGTTTTTCTTGGATTTGTTTTTGTTGTGCTTGCTTTTCTGCCTCCGAC GTGGAGCGATCTATTTATATATCTATTTTGGTTTATTTTGGAACCACAAA TTCTCTTCGGCATAGGAAAAATATATATGCCTAGGCATTGACACTTTTTG TGAGACATTCAAACACTTAGTCAAAGAAAGGTGGCTAGATATCGACATTG TGCAACGCCGGCTTCGATTGGGAAATCTTCGTCAGATACCATCGCGCAGA AATTTATAGATTTTCCAACGGACTAGAATATATAGATATCGGTGTCAAAA CAAATATGGCCATTATGTAACGCCCCGATTCCTGTCCAGCACACTTTGCA CACCAGCGACACCCGACAGCCAAAACCGCCCGCAACATGGACATCCTAAT CTTTGTGACGGCGGCGGCCCATTTGGTCTACACGCCCTTTACGAAAGTGG AGGAGAGCTTCAATCTCCAGGCCATGCACGACATTCTTTATCTGCGAAAC AACTTTACGCAGTACGATCACCATGACTATCCGGGCGTGGTTCCACGCAC CTTCATCGGCCCATTGGTGGTGTCCATTATCTCAGCCCCGTTTGTCCTGC TCTTCGAGACCCTTAGCATCAACAAGTTCTGGGCCCAATATGTAGTGCGC CTTGTCTTGGCTGGGGCCATCTCTGTGGCCTGGAACAGCCTACGGCAGGC GGTGACAAAGATTTACGGAGTTGAGGTCCGCCTGTGGTTCACAGCCATCA CTATTACGCAGTTCCACTTCATGTTCTACATGACTAGGCCTCTGCCCAAT ATCTTTGCCCTGCCGATAGTGCTCTTTGCCATTGCCTATTGGCTACGCGA CCAGCACAAGCCATTCATCATCTGCTCTGGTATATCCATTCTCGTCTTTC GATCCGAGTTGGCGTTATTTTTGGGTATTTTGCTGGTGGTGAGCCTCCTA CGGCGAAAAGTTTCCATTGACGGGCTACTCAAAGTTGCACTGCCGGCGGG CGTCTGCATTTTGGCTGCCACAGTGCTGGTGGACTCGTTCTTTTGGCGCC GCCTGCTTTGGCCCGAGGGTGAGGTGCTATGGTACAACACCGTACTCAAT AAGAGCTCCAACTGGGGTACCTCGCCTTTTCTATGGTACTTTTACTCCGC CCTGCCACGTGCCATGGGTGCATCGCTGGTGCTCGTGCCCATCGGCGTCG CATTGGAGCCACGTATTCGGCCATTGGTCCTGTCGGCTCTCCTCTTTGTC CTTTTGTACTCCATTCTGCCGCACAAGGAGCTGCGCTTCATCATCTACGT GTTTCCAGTTCTCAACATTGCTGCGGCTTGCGCATGCCAACGAATTTGGA TGAACAGCGCCAAGTCAACGTGGCATAGCTTTCTGGCGCTCGCCTGTGGA GCCCATCTCCTGCTAAATGTCTTTATAACGCTCTTCCTGCTTGTCATTTC GGGCACCAACTATCCGGGCGGAGCAGCCCTCTCCCGATTGCATCGCTTGG AAGCTGGCACCTCAAACGTTTCCGTTCACATTTCCAACTTGGCCGCCCAG AGCGGCGTGTCGCGTTTTATGGAAATAAATAATGAATGGACTTACAGCAA GGACGAGACAATGAACTATACCCAGGCGGATTTGGTTGCATACACACATC TTTTGGTCGAGGCGAAGAACAAGCAAAACACTGAACTATGGGCATCGCTC CAAAACGAATTCGATACGCTAGAGTTTATTGACTGCTTCAACAGCATCGG CATTCAATACAATTCTCTGCTGCCGGTGCGAATAAAGACGAAGCCTTGCA TTGGTATACTTAAAAAGAGACCAGTGGCTCCAAAAGAGGCATCAAAAACA AAAGAGAAAATAGCAAAAACTAAGACATACCCGGTGGAAAAAGAAACGTT ATTAGCTCCTGTTAAAGAATTTCCAAAAGTGATAGGAGATCCGAAAATGA AATCCAGGTTACAAGTCGATGCGGATGATGATGATGGCATCGTGTCCACT GTGGAGGAAATGTCGCTAGAACTGGAAACGGATACTGAGCCCCATGCTGG GGCAGAGACCATCGAAACGCCCTTGAAGGAGATCAATTTCCAGGAGCTGA GAACCCTCGCCTTGGGACAGGCAACCAAGAAGTCGAGAGCAGCCACCAAG ATGAAGATTCGACAAATTATCGAGCAGCACTACCGCGCCAAGGGCAAACA AATCGAAAACGACTCCGCAGAGACCCAAAAAACGCAAGGAAAGGCTGGAT TACGGCAATCCGTAAAGTCCATCATAAAGCAGGAGAAGATCAAGGAAATG ATCGAGCAGATCGCTACGATGGATCTGACACGCATCTGCGATTTGGAAAG GACTTCGACCAAAGATTGCTTAAAACAGGTCATAGACAAAATAGATGACA GCGAGGGTTTGAAATCCAAATGACAAAACCTATCACACTTTAAACTGTTT TATTAAATTAAGCTAAGCGTTTGTTAATGGCACAGTTGTAAAAATTTAAA ATAAAAGCAATAATAAAAGCGAACCAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 5583970..5585147 | 1346..2523 | 5815 | 99.6 | Plus |
chr3R | 27901430 | chr3R | 5582329..5582840 | 1..512 | 2560 | 100 | Plus |
chr3R | 27901430 | chr3R | 5583538..5583910 | 973..1345 | 1865 | 100 | Plus |
chr3R | 27901430 | chr3R | 5583089..5583265 | 643..819 | 885 | 100 | Plus |
chr3R | 27901430 | chr3R | 5583330..5583486 | 818..974 | 785 | 100 | Plus |
chr3R | 27901430 | chr3R | 5582898..5583033 | 510..645 | 680 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 9758134..9759317 | 1346..2529 | 5905 | 99.9 | Plus |
3R | 32079331 | 3R | 9756493..9757004 | 1..512 | 2560 | 100 | Plus |
3R | 32079331 | 3R | 9757702..9758074 | 973..1345 | 1865 | 100 | Plus |
3R | 32079331 | 3R | 9757253..9757429 | 643..819 | 885 | 100 | Plus |
3R | 32079331 | 3R | 9757494..9757650 | 818..974 | 785 | 100 | Plus |
3R | 32079331 | 3R | 9757062..9757197 | 510..645 | 680 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 9498965..9500148 | 1346..2529 | 5905 | 99.9 | Plus |
3R | 31820162 | 3R | 9497324..9497835 | 1..512 | 2560 | 100 | Plus |
3R | 31820162 | 3R | 9498533..9498905 | 973..1345 | 1865 | 100 | Plus |
3R | 31820162 | 3R | 9498084..9498260 | 643..819 | 885 | 100 | Plus |
3R | 31820162 | 3R | 9498325..9498481 | 818..974 | 785 | 100 | Plus |
3R | 31820162 | 3R | 9497893..9498028 | 510..645 | 680 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 5582329..5582840 | 1..512 | 100 | -> | Plus |
chr3R | 5582901..5583033 | 513..645 | 100 | -> | Plus |
chr3R | 5583092..5583265 | 646..819 | 100 | -> | Plus |
chr3R | 5583332..5583485 | 820..973 | 100 | -> | Plus |
chr3R | 5583539..5583910 | 974..1345 | 100 | -> | Plus |
chr3R | 5583970..5585149 | 1346..2525 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8412-RA | 1..2037 | 387..2423 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8412-RA | 1..2037 | 387..2423 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8412-RA | 1..2037 | 387..2423 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8412-RA | 1..2037 | 387..2423 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8412-RA | 1..2037 | 387..2423 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8412-RA | 1..2525 | 1..2525 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8412-RA | 1..2525 | 1..2525 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8412-RA | 3..2527 | 1..2525 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8412-RA | 1..2525 | 1..2525 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8412-RA | 3..2527 | 1..2525 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9757496..9757649 | 820..973 | 100 | -> | Plus |
3R | 9756493..9757004 | 1..512 | 100 | -> | Plus |
3R | 9757065..9757197 | 513..645 | 100 | -> | Plus |
3R | 9757256..9757429 | 646..819 | 100 | -> | Plus |
3R | 9757703..9758074 | 974..1345 | 100 | -> | Plus |
3R | 9758134..9759313 | 1346..2525 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9757496..9757649 | 820..973 | 100 | -> | Plus |
3R | 9756493..9757004 | 1..512 | 100 | -> | Plus |
3R | 9757065..9757197 | 513..645 | 100 | -> | Plus |
3R | 9757256..9757429 | 646..819 | 100 | -> | Plus |
3R | 9757703..9758074 | 974..1345 | 100 | -> | Plus |
3R | 9758134..9759313 | 1346..2525 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9757496..9757649 | 820..973 | 100 | -> | Plus |
3R | 9756493..9757004 | 1..512 | 100 | -> | Plus |
3R | 9757065..9757197 | 513..645 | 100 | -> | Plus |
3R | 9757256..9757429 | 646..819 | 100 | -> | Plus |
3R | 9757703..9758074 | 974..1345 | 100 | -> | Plus |
3R | 9758134..9759313 | 1346..2525 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 5583425..5583796 | 974..1345 | 100 | -> | Plus |
arm_3R | 5582215..5582726 | 1..512 | 100 | -> | Plus |
arm_3R | 5582787..5582919 | 513..645 | 100 | -> | Plus |
arm_3R | 5582978..5583151 | 646..819 | 100 | -> | Plus |
arm_3R | 5583218..5583371 | 820..973 | 100 | -> | Plus |
arm_3R | 5583856..5585035 | 1346..2525 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9498327..9498480 | 820..973 | 100 | -> | Plus |
3R | 9497324..9497835 | 1..512 | 100 | -> | Plus |
3R | 9497896..9498028 | 513..645 | 100 | -> | Plus |
3R | 9498087..9498260 | 646..819 | 100 | -> | Plus |
3R | 9498534..9498905 | 974..1345 | 100 | -> | Plus |
3R | 9498965..9500144 | 1346..2525 | 99 | Plus |
Translation from 386 to 2422
> RE17513.hyp MDILIFVTAAAHLVYTPFTKVEESFNLQAMHDILYLRNNFTQYDHHDYPG VVPRTFIGPLVVSIISAPFVLLFETLSINKFWAQYVVRLVLAGAISVAWN SLRQAVTKIYGVEVRLWFTAITITQFHFMFYMTRPLPNIFALPIVLFAIA YWLRDQHKPFIICSGISILVFRSELALFLGILLVVSLLRRKVSIDGLLKV ALPAGVCILAATVLVDSFFWRRLLWPEGEVLWYNTVLNKSSNWGTSPFLW YFYSALPRAMGASLVLVPIGVALEPRIRPLVLSALLFVLLYSILPHKELR FIIYVFPVLNIAAACACQRIWMNSAKSTWHSFLALACGAHLLLNVFITLF LLVISGTNYPGGAALSRLHRLEAGTSNVSVHISNLAAQSGVSRFMEINNE WTYSKDETMNYTQADLVAYTHLLVEAKNKQNTELWASLQNEFDTLEFIDC FNSIGIQYNSLLPVRIKTKPCIGILKKRPVAPKEASKTKEKIAKTKTYPV EKETLLAPVKEFPKVIGDPKMKSRLQVDADDDDGIVSTVEEMSLELETDT EPHAGAETIETPLKEINFQELRTLALGQATKKSRAATKMKIRQIIEQHYR AKGKQIENDSAETQKTQGKAGLRQSVKSIIKQEKIKEMIEQIATMDLTRI CDLERTSTKDCLKQVIDKIDDSEGLKSK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG8412-PA | 678 | CG8412-PA | 1..678 | 1..678 | 3467 | 100 | Plus |
Translation from 386 to 2422
> RE17513.pep MDILIFVTAAAHLVYTPFTKVEESFNLQAMHDILYLRNNFTQYDHHDYPG VVPRTFIGPLVVSIISAPFVLLFETLSINKFWAQYVVRLVLAGAISVAWN SLRQAVTKIYGVEVRLWFTAITITQFHFMFYMTRPLPNIFALPIVLFAIA YWLRDQHKPFIICSGISILVFRSELALFLGILLVVSLLRRKVSIDGLLKV ALPAGVCILAATVLVDSFFWRRLLWPEGEVLWYNTVLNKSSNWGTSPFLW YFYSALPRAMGASLVLVPIGVALEPRIRPLVLSALLFVLLYSILPHKELR FIIYVFPVLNIAAACACQRIWMNSAKSTWHSFLALACGAHLLLNVFITLF LLVISGTNYPGGAALSRLHRLEAGTSNVSVHISNLAAQSGVSRFMEINNE WTYSKDETMNYTQADLVAYTHLLVEAKNKQNTELWASLQNEFDTLEFIDC FNSIGIQYNSLLPVRIKTKPCIGILKKRPVAPKEASKTKEKIAKTKTYPV EKETLLAPVKEFPKVIGDPKMKSRLQVDADDDDGIVSTVEEMSLELETDT EPHAGAETIETPLKEINFQELRTLALGQATKKSRAATKMKIRQIIEQHYR AKGKQIENDSAETQKTQGKAGLRQSVKSIIKQEKIKEMIEQIATMDLTRI CDLERTSTKDCLKQVIDKIDDSEGLKSK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF23035-PA | 688 | GF23035-PA | 1..688 | 1..678 | 2835 | 79.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17092-PA | 678 | GG17092-PA | 1..678 | 1..678 | 3324 | 93.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH17417-PA | 672 | GH17417-PA | 1..672 | 1..678 | 2713 | 75.7 | Plus |
Dgri\GH17379-PA | 625 | GH17379-PA | 157..442 | 85..355 | 158 | 25.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG8412-PA | 678 | CG8412-PA | 1..678 | 1..678 | 3467 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI22746-PA | 619 | GI22746-PA | 1..613 | 1..671 | 2628 | 74.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL24301-PA | 685 | GL24301-PA | 3..685 | 1..678 | 2770 | 78.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA21058-PA | 685 | GA21058-PA | 3..685 | 1..678 | 2773 | 79.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM23833-PA | 678 | GM23833-PA | 1..678 | 1..678 | 3529 | 97.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD18643-PA | 631 | GD18643-PA | 1..631 | 1..678 | 3244 | 90.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ22748-PA | 690 | GJ22748-PA | 1..685 | 1..672 | 2659 | 74.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK11961-PA | 683 | GK11961-PA | 1..682 | 1..678 | 2735 | 76.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE25981-PA | 678 | GE25981-PA | 1..678 | 1..678 | 3336 | 93.8 | Plus |