Clone RE17665 Report

Search the DGRC for RE17665

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:176
Well:65
Vector:pFlc-1
Associated Gene/TranscriptCG8191-RA
Protein status:RE17665.pep: gold
Preliminary Size:1038
Sequenced Size:1502

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8191 2001-12-14 Blastp of sequenced clone
CG8191 2002-01-01 Sim4 clustering to Release 2
CG8191 2003-01-01 Sim4 clustering to Release 3
CG8191 2008-04-29 Release 5.5 accounting
CG8191 2008-08-15 Release 5.9 accounting
CG8191 2008-12-18 5.12 accounting

Clone Sequence Records

RE17665.complete Sequence

1502 bp (1502 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071134

> RE17665.complete
GCCGTCCGTATGGATTTGTTTATCCGAAAAGAACTGAGCCTATCCACGAG
CAGCGTGCTTGAAGATGTGGCGCCGCACTGTCTCAAGCTACTCACATGGC
TGCACGATTGTCAGGAGGAGATGCACTCCGAGCACCGCCATCTGCGACTG
AGCCAATCCGTTGTGGAATCCCTGCTAAAGGCTCACCTGTACCTGTTCGA
GTGCTATGATCGCTTCGGGCAATCGCTGGCCGAACGCTGCGATTGCCGTG
GCTTCTTCGCTAGCTGCTCTGCATTGGTGGATCGACGGAAGTGTATTCGT
GAGCTGTGTACCACCATCGTGAACACACGAAAGGGAGAAACTCATGCACC
ACTGCTTCATCTTTCGCATCGAACGTTGGCCGAGATTCAGCCTGCGTGGA
GTGAGATCGGTGATTTGGACTGGTCGGCAATACGCCAATCGGATGCGCTT
TCTTCCAGCGATTTTATCAATCCCGATCTTCAGCAGATGCGACGGCTAGT
CAAGCGGATTGGCCGCTTATCCAGCCTTGAGGACATGCAGACCGCAATAA
AGCGCTCCATGGAGCTGATTGAGTACCAGGTGTGGCTGCAGCTTTTTAGG
GAGCCAAAGGACAGCGAAATTCACAAGGATTGCTACCTAATGCGCCACAT
GATCTGTGACACTTTATCGGAGGGCGGATCTACCGCTTGCACCGGCTTCC
TGCACAATATCTTTCTGTTCGTATCGCAATCCGCCAATGAGATGAGATTC
TGGGCCAGTATGGAGCATGTACGTCTGGCCGGCAGCCTTATTGCCTACCT
AATCGACCATTGGAATCGCCACCTGCCCTACCTAGACTTGGATGAGATGC
AATTGACCGCTGATGCACCAGTCACGGCTGTCTCGCAGCTGCCCGTGAAC
GAGGCCACATACATAACCTACCTGATGCTGGCCACCGGATCCATATGTCG
CCGGCAGTTCGCCCAGCAGCTGCGTGCCCAACTACCCCCCAATTCCTGGA
CACATTTGCTGGAGCTGCTAAATAAAGTGGCATTCGTTTTCACTTAACTA
CACTACGAGTTTAATCATGTTTCGGCAAAAACTCGCAGTTGCCATCGGTC
AGGCGAACCACCTTCTCGCCCTTCTCGGCCAGGATCTCCTCGATGTTGCG
CTTGCCGTCCAGATCTGTGAACCAGTTCAGATTGTCGGCGATCAGGTGGT
GATTGGAGCAGCCCTCGCAGGTCACGATAACAACGCCGCGTTGGTATGCC
AGCTTCGAAATGGTCTTCATGTTCCGGGTCTGGCACACCTTGCAGGTGTA
GATCAGCTGCATCTTGGCCTCCAGTTTCGCCAGAGGAATGCTATTCGTGG
CCACCGTCTTGTCCGCATCGTCCTGGGAGCAGAGCAAAATAATTATACTT
AACTTTTTTGTTATACATAATTTTAAATATTGCATTCCATTTATAATATT
TTAAATTACAAATGTAAATAACATTATTTAATACCAAAAAAAAAAAAAAA
AA

RE17665.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:41:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG8191-RA 1485 CG8191-RA 4..1483 4..1483 7400 100 Plus
CG12379-RB 772 CG12379-RB 433..772 1373..1034 1700 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:45:00
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 15622021..15623500 4..1483 7370 99.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:38:49 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:44:58
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15732185..15733668 4..1487 7405 99.9 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:08:48
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 15740283..15741766 4..1487 7405 99.9 Plus
Blast to na_te.dros performed 2019-03-16 12:44:59
Subject Length Description Subject Range Query Range Score Percent Strand
1360 3409 1360 1360 3409bp 3007..3108 1483..1386 131 63.1 Minus
gypsy11 4428 gypsy11 GYPSY11 4428bp 3897..3961 1457..1386 119 68.1 Minus

RE17665.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:45:59 Download gff for RE17665.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 15622018..15623450 1..1433 99 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:58:56 Download gff for RE17665.complete
Subject Subject Range Query Range Percent Splice Strand
CG8191-RA 1..1038 10..1047 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:07:11 Download gff for RE17665.complete
Subject Subject Range Query Range Percent Splice Strand
CG8191-RA 1..1038 10..1047 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:38:28 Download gff for RE17665.complete
Subject Subject Range Query Range Percent Splice Strand
CG8191-RA 1..1038 10..1047 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:31:34 Download gff for RE17665.complete
Subject Subject Range Query Range Percent Splice Strand
CG8191-RA 1..1038 10..1047 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:53:52 Download gff for RE17665.complete
Subject Subject Range Query Range Percent Splice Strand
CG8191-RA 1..1038 10..1047 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:35:43 Download gff for RE17665.complete
Subject Subject Range Query Range Percent Splice Strand
CG8191-RA 1..1482 1..1482 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:07:11 Download gff for RE17665.complete
Subject Subject Range Query Range Percent Splice Strand
CG8191-RA 1..1482 1..1482 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:38:28 Download gff for RE17665.complete
Subject Subject Range Query Range Percent Splice Strand
CG8191-RA 5..1486 1..1482 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:31:35 Download gff for RE17665.complete
Subject Subject Range Query Range Percent Splice Strand
CG8191-RA 1..1482 1..1482 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:53:52 Download gff for RE17665.complete
Subject Subject Range Query Range Percent Splice Strand
CG8191-RA 5..1486 1..1482 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:45:59 Download gff for RE17665.complete
Subject Subject Range Query Range Percent Splice Strand
X 15732182..15733666 1..1485 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:45:59 Download gff for RE17665.complete
Subject Subject Range Query Range Percent Splice Strand
X 15732182..15733666 1..1485 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:45:59 Download gff for RE17665.complete
Subject Subject Range Query Range Percent Splice Strand
X 15732182..15733666 1..1485 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:38:28 Download gff for RE17665.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15626215..15627699 1..1485 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:08:13 Download gff for RE17665.complete
Subject Subject Range Query Range Percent Splice Strand
X 15740280..15741764 1..1485 99   Plus

RE17665.hyp Sequence

Translation from 0 to 1046

> RE17665.hyp
AVRMDLFIRKELSLSTSSVLEDVAPHCLKLLTWLHDCQEEMHSEHRHLRL
SQSVVESLLKAHLYLFECYDRFGQSLAERCDCRGFFASCSALVDRRKCIR
ELCTTIVNTRKGETHAPLLHLSHRTLAEIQPAWSEIGDLDWSAIRQSDAL
SSSDFINPDLQQMRRLVKRIGRLSSLEDMQTAIKRSMELIEYQVWLQLFR
EPKDSEIHKDCYLMRHMICDTLSEGGSTACTGFLHNIFLFVSQSANEMRF
WASMEHVRLAGSLIAYLIDHWNRHLPYLDLDEMQLTADAPVTAVSQLPVN
EATYITYLMLATGSICRRQFAQQLRAQLPPNSWTHLLELLNKVAFVFT*

RE17665.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:43:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG8191-PA 345 CG8191-PA 1..345 4..348 1813 100 Plus

RE17665.pep Sequence

Translation from 9 to 1046

> RE17665.pep
MDLFIRKELSLSTSSVLEDVAPHCLKLLTWLHDCQEEMHSEHRHLRLSQS
VVESLLKAHLYLFECYDRFGQSLAERCDCRGFFASCSALVDRRKCIRELC
TTIVNTRKGETHAPLLHLSHRTLAEIQPAWSEIGDLDWSAIRQSDALSSS
DFINPDLQQMRRLVKRIGRLSSLEDMQTAIKRSMELIEYQVWLQLFREPK
DSEIHKDCYLMRHMICDTLSEGGSTACTGFLHNIFLFVSQSANEMRFWAS
MEHVRLAGSLIAYLIDHWNRHLPYLDLDEMQLTADAPVTAVSQLPVNEAT
YITYLMLATGSICRRQFAQQLRAQLPPNSWTHLLELLNKVAFVFT*

RE17665.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 20:55:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21924-PA 344 GF21924-PA 1..344 1..345 1025 55.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 20:55:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17903-PA 345 GG17903-PA 1..345 1..345 1643 88.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 20:55:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24544-PA 362 GH24544-PA 1..362 1..345 652 40.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:49:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG8191-PA 345 CG8191-PA 1..345 1..345 1813 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 20:55:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16352-PA 360 GI16352-PA 1..360 1..345 712 43.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 20:55:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16488-PA 345 GL16488-PA 1..345 1..345 1063 56 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 20:55:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20883-PA 345 GA20883-PA 1..345 1..345 1056 55.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:55:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22569-PA 186 GM22569-PA 1..186 160..345 961 95.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 20:55:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17231-PA 369 GD17231-PA 25..369 1..345 1740 94.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 20:55:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16899-PA 359 GJ16899-PA 1..359 1..345 714 44.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 20:55:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19379-PA 347 GK19379-PA 1..347 1..345 801 47.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 20:55:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17211-PA 345 GE17211-PA 1..345 1..345 1613 86.4 Plus