BDGP Sequence Production Resources |
Search the DGRC for RE17678
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 176 |
Well: | 78 |
Vector: | pFlc-1 |
Associated Gene/Transcript | TwdlP-RA |
Protein status: | RE17678.pep: gold |
Preliminary Size: | 663 |
Sequenced Size: | 768 |
Gene | Date | Evidence |
---|---|---|
CG14240 | 2001-12-14 | Blastp of sequenced clone |
CG14240 | 2002-01-01 | Sim4 clustering to Release 2 |
CG14240 | 2003-01-01 | Sim4 clustering to Release 3 |
TwdlP | 2008-04-29 | Release 5.5 accounting |
TwdlP | 2008-08-15 | Release 5.9 accounting |
TwdlP | 2008-12-18 | 5.12 accounting |
768 bp (768 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071135
> RE17678.complete ATTCGTCTAGAATATCTCGTAGGCATCGGGTCAATATGCGTGCCCTCATT ATTCTAAGCATTGTGGCAGCGGCAAGTGCCGGTAGCTTGTCCGGATATAA TTACGGACAAGGTGCGACAACCAGTATTGGGGGCAGTGGTGTATCCCCAG TCCCTGCACTGGCGGGACCAGTTAGCTATAGTGCCGCTCCCCAGGCGTCA GTTCACAAGGAGTTCTACAGCTTCTATGCCAACGATGACGACTTCGAGGA TAAGGCTGCTCTCCAGAGGGCTCTTGCCTCGGTCAAGAAGAACATTCGCG TCATCTTCATCAAGTCGCCGGAGAACCGTGGCTACGAGAATGCCGTTTTG GCCCTGGCTAAACAGGCGGCCCAGCAGCAGACTGCCATATATGTGCTGCA CAAACAGACTGATATCAACGAGCTGGCCCAGAAATTCAATGCCGTGCGCC AGAATGCCAACAAGAAGCCCGAGGTGCACTTCGTCAAGTACAGGACACCT GAGGATGCTGCCAATGCCCAGCGGGCAATCCAATCGCAGTACGATCAACT CGGCGGCTCCAGCCAGTCCATCAACGGTGGCGTGGCTAATGCCATCAACT TTGCATCCCAGGGAGCTGCTCCAGCACGCGTTACTCCTCAACAGGTGCCC CAGAGCAACTACCTACCCGCCAACATCCTGAGTCGCCTGCGTCACTAGAA AATCGATTGTTAAACGTTGTTTTCGAATAAAAGTTATCTAATTTGGTTAT GCAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
TwdlP-RA | 753 | TwdlP-RA | 2..752 | 1..751 | 3755 | 100 | Plus |
TwdlO-RA | 690 | TwdlO-RA | 268..579 | 297..608 | 645 | 80.4 | Plus |
TwdlM-RA | 1032 | TwdlM-RA | 683..805 | 458..580 | 300 | 82.9 | Plus |
TwdlM-RA | 1032 | TwdlM-RA | 522..640 | 297..415 | 220 | 78.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 22443730..22444480 | 751..1 | 3725 | 99.7 | Minus |
chr3R | 27901430 | chr3R | 22449235..22449546 | 608..297 | 645 | 80.4 | Minus |
chr3R | 27901430 | chr3R | 22455577..22455885 | 300..608 | 480 | 77 | Plus |
chr3R | 27901430 | chr3R | 22447902..22448191 | 586..297 | 475 | 77.6 | Minus |
chr3R | 27901430 | chr3R | 22442842..22443125 | 297..580 | 445 | 77.1 | Plus |
chr3R | 27901430 | chr3R | 22445821..22446084 | 560..297 | 435 | 77.7 | Minus |
chr3R | 27901430 | chr3R | 22451204..22451476 | 569..297 | 405 | 76.6 | Minus |
chr3R | 27901430 | chr3R | 22453425..22453675 | 297..547 | 385 | 76.9 | Plus |
chr3R | 27901430 | chr3R | 22457307..22457564 | 303..560 | 270 | 73.6 | Plus |
chr3R | 27901430 | chr3R | 22463751..22463826 | 457..532 | 185 | 82.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 26620605..26621359 | 755..1 | 3760 | 99.9 | Minus |
3R | 32079331 | 3R | 26626119..26626430 | 608..297 | 645 | 80.4 | Minus |
3R | 32079331 | 3R | 26632462..26632770 | 300..608 | 480 | 77 | Plus |
3R | 32079331 | 3R | 26624784..26625073 | 586..297 | 460 | 77.2 | Minus |
3R | 32079331 | 3R | 26619721..26620004 | 297..580 | 445 | 77.1 | Plus |
3R | 32079331 | 3R | 26622700..26622963 | 560..297 | 435 | 77.7 | Minus |
3R | 32079331 | 3R | 26628090..26628362 | 569..297 | 405 | 76.6 | Minus |
3R | 32079331 | 3R | 26630310..26630560 | 297..547 | 385 | 76.9 | Plus |
3R | 32079331 | 3R | 26634193..26634450 | 303..560 | 270 | 73.6 | Plus |
3R | 32079331 | 3R | 26640630..26640705 | 457..532 | 185 | 82.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 26361436..26362190 | 755..1 | 3760 | 99.8 | Minus |
3R | 31820162 | 3R | 26366950..26367261 | 608..297 | 645 | 80.4 | Minus |
3R | 31820162 | 3R | 26373293..26373601 | 300..608 | 480 | 77 | Plus |
3R | 31820162 | 3R | 26363531..26363794 | 560..297 | 435 | 77.6 | Minus |
3R | 31820162 | 3R | 26365615..26365850 | 586..351 | 430 | 78.8 | Minus |
3R | 31820162 | 3R | 26360713..26360835 | 458..580 | 300 | 82.9 | Plus |
3R | 31820162 | 3R | 26368921..26369032 | 569..458 | 260 | 82.1 | Minus |
3R | 31820162 | 3R | 26371302..26371391 | 458..547 | 255 | 85.5 | Plus |
3R | 31820162 | 3R | 26360552..26360670 | 297..415 | 220 | 78.9 | Plus |
3R | 31820162 | 3R | 26371141..26371256 | 297..412 | 205 | 78.4 | Plus |
3R | 31820162 | 3R | 26381461..26381536 | 457..532 | 185 | 82.8 | Plus |
3R | 31820162 | 3R | 26375024..26375137 | 303..416 | 180 | 77.1 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 22443729..22444480 | 1..752 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TwdlP-RA | 1..663 | 36..698 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TwdlP-RA | 1..663 | 36..698 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TwdlP-RA | 1..663 | 36..698 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TwdlP-RA | 1..663 | 36..698 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TwdlP-RA | 1..663 | 36..698 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TwdlP-RA | 2..752 | 1..752 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TwdlP-RA | 2..752 | 1..752 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TwdlP-RA | 6..756 | 1..752 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TwdlP-RA | 2..752 | 1..752 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TwdlP-RA | 6..756 | 1..752 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 26620608..26621359 | 1..752 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 26620608..26621359 | 1..752 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 26620608..26621359 | 1..752 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 22446330..22447081 | 1..752 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 26361439..26362190 | 1..752 | 99 | Minus |
Translation from 2 to 697
> RE17678.hyp SSRISRRHRVNMRALIILSIVAAASAGSLSGYNYGQGATTSIGGSGVSPV PALAGPVSYSAAPQASVHKEFYSFYANDDDFEDKAALQRALASVKKNIRV IFIKSPENRGYENAVLALAKQAAQQQTAIYVLHKQTDINELAQKFNAVRQ NANKKPEVHFVKYRTPEDAANAQRAIQSQYDQLGGSSQSINGGVANAINF ASQGAAPARVTPQQVPQSNYLPANILSRLRH*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
TwdlP-PA | 220 | CG14240-PA | 1..220 | 12..231 | 1099 | 100 | Plus |
TwdlN-PA | 309 | CG5476-PA | 107..307 | 29..231 | 641 | 63.2 | Plus |
TwdlO-PA | 229 | CG6452-PA | 1..227 | 12..230 | 612 | 60 | Plus |
TwdlL-PB | 279 | CG6447-PB | 69..277 | 19..228 | 604 | 59.7 | Plus |
TwdlL-PA | 285 | CG6447-PA | 75..283 | 19..228 | 604 | 59.7 | Plus |
Translation from 35 to 697
> RE17678.pep MRALIILSIVAAASAGSLSGYNYGQGATTSIGGSGVSPVPALAGPVSYSA APQASVHKEFYSFYANDDDFEDKAALQRALASVKKNIRVIFIKSPENRGY ENAVLALAKQAAQQQTAIYVLHKQTDINELAQKFNAVRQNANKKPEVHFV KYRTPEDAANAQRAIQSQYDQLGGSSQSINGGVANAINFASQGAAPARVT PQQVPQSNYLPANILSRLRH*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF18577-PA | 228 | GF18577-PA | 1..228 | 1..220 | 851 | 80.3 | Plus |
Dana\GF18574-PA | 231 | GF18574-PA | 1..229 | 1..219 | 564 | 57.3 | Plus |
Dana\GF16445-PA | 295 | GF16445-PA | 116..292 | 42..219 | 551 | 65.4 | Plus |
Dana\GF18576-PA | 281 | GF18576-PA | 103..280 | 41..219 | 537 | 65 | Plus |
Dana\GF16446-PA | 245 | GF16446-PA | 1..245 | 1..220 | 521 | 51.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG12183-PA | 220 | GG12183-PA | 1..220 | 1..220 | 1091 | 96.8 | Plus |
Dere\GG12179-PA | 239 | GG12179-PA | 1..239 | 1..220 | 585 | 54.4 | Plus |
Dere\GG12180-PA | 229 | GG12180-PA | 1..227 | 1..219 | 578 | 60 | Plus |
Dere\GG11490-PA | 285 | GG11490-PA | 106..283 | 42..220 | 568 | 67.8 | Plus |
Dere\GG11489-PA | 274 | GG11489-PA | 81..273 | 50..219 | 545 | 60.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18880-PA | 223 | GH18880-PA | 1..223 | 1..220 | 708 | 71 | Plus |
Dgri\GH18876-PA | 232 | GH18876-PA | 1..231 | 1..219 | 613 | 56.4 | Plus |
Dgri\GH18727-PA | 296 | GH18727-PA | 121..293 | 45..219 | 558 | 68.8 | Plus |
Dgri\GH18877-PA | 228 | GH18877-PA | 1..226 | 1..219 | 543 | 56.7 | Plus |
Dgri\GH18728-PA | 237 | GH18728-PA | 1..237 | 1..218 | 520 | 50.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
TwdlP-PA | 220 | CG14240-PA | 1..220 | 1..220 | 1099 | 100 | Plus |
TwdlN-PA | 309 | CG5476-PA | 107..307 | 18..220 | 641 | 63.2 | Plus |
TwdlO-PA | 229 | CG6452-PA | 1..227 | 1..219 | 612 | 60 | Plus |
TwdlL-PB | 279 | CG6447-PB | 69..277 | 8..217 | 604 | 59.7 | Plus |
TwdlL-PA | 285 | CG6447-PA | 75..283 | 8..217 | 604 | 59.7 | Plus |
TwdlB-PA | 286 | CG6478-PA | 75..285 | 8..219 | 601 | 58.7 | Plus |
TwdlM-PA | 288 | CG5468-PA | 75..288 | 10..218 | 600 | 56.9 | Plus |
TwdlK-PA | 247 | CG6460-PA | 1..246 | 1..219 | 574 | 52.8 | Plus |
TwdlJ-PB | 274 | CG5471-PB | 7..273 | 4..219 | 547 | 49.6 | Plus |
TwdlH-PA | 241 | CG31080-PA | 1..237 | 1..215 | 541 | 52.5 | Plus |
TwdlD-PA | 256 | CG14243-PA | 1..241 | 1..216 | 481 | 45.6 | Plus |
Tb-PA | 283 | CG5480-PA | 43..238 | 14..206 | 430 | 47.4 | Plus |
TwdlQ-PA | 245 | CG14250-PA | 1..242 | 1..215 | 411 | 41.1 | Plus |
TwdlR-PA | 325 | CG31081-PA | 11..240 | 1..211 | 331 | 37.3 | Plus |
TwdlF-PA | 354 | CG14639-PA | 137..288 | 54..202 | 232 | 36.4 | Plus |
TwdlW-PA | 308 | CG4060-PA | 93..280 | 34..208 | 230 | 34.7 | Plus |
TwdlX-PA | 346 | CG32571-PA | 115..272 | 30..183 | 228 | 36.9 | Plus |
TwdlG-PC | 278 | CG14643-PC | 93..241 | 44..184 | 221 | 39.7 | Plus |
TwdlG-PB | 278 | CG14643-PB | 93..241 | 44..184 | 221 | 39.7 | Plus |
TwdlG-PA | 278 | CG14643-PA | 93..241 | 44..184 | 221 | 39.7 | Plus |
TwdlV-PA | 251 | CG14640-PA | 1..202 | 1..184 | 220 | 32.7 | Plus |
TwdlY-PA | 247 | CG32570-PA | 43..243 | 24..212 | 212 | 34.3 | Plus |
Twdlalpha-PA | 388 | CG32574-PA | 117..301 | 19..186 | 212 | 31.6 | Plus |
TwdlS-PA | 228 | CG14242-PA | 36..168 | 45..178 | 189 | 34.5 | Plus |
TwdlZ-PB | 210 | CG32569-PB | 30..192 | 51..209 | 180 | 34.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI24737-PA | 231 | GI24737-PA | 1..229 | 1..220 | 761 | 66.1 | Plus |
Dmoj\GI24734-PA | 227 | GI24734-PA | 1..225 | 1..219 | 579 | 57.4 | Plus |
Dmoj\GI22879-PA | 308 | GI22879-PA | 129..308 | 39..220 | 533 | 64.1 | Plus |
Dmoj\GI24735-PA | 315 | GI24735-PA | 143..315 | 45..218 | 524 | 62.9 | Plus |
Dmoj\GI24736-PA | 280 | GI24736-PA | 101..280 | 39..220 | 507 | 61.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL24443-PA | 277 | GL24443-PA | 99..277 | 42..220 | 744 | 79.9 | Plus |
Dper\GL24439-PA | 231 | GL24439-PA | 1..229 | 1..219 | 579 | 59.3 | Plus |
Dper\GL24787-PA | 213 | GL24787-PA | 1..211 | 1..219 | 560 | 58.7 | Plus |
Dper\GL23101-PA | 316 | GL23101-PA | 140..313 | 45..219 | 556 | 67.6 | Plus |
Dper\GL23102-PA | 264 | GL23102-PA | 1..262 | 1..217 | 549 | 49.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA12853-PA | 225 | GA12853-PA | 1..225 | 1..220 | 817 | 74.2 | Plus |
Dpse\GA19605-PA | 230 | GA19605-PA | 1..228 | 1..219 | 597 | 60.9 | Plus |
Dpse\GA18910-PA | 316 | GA18910-PA | 140..313 | 45..219 | 556 | 67.6 | Plus |
Dpse\GA27141-PA | 264 | GA27141-PA | 1..262 | 1..217 | 545 | 49.2 | Plus |
Dpse\GA26613-PA | 250 | GA26613-PA | 1..249 | 1..219 | 531 | 53 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM10179-PA | 220 | GM10179-PA | 1..220 | 1..220 | 1102 | 97.3 | Plus |
Dsec\GM10332-PA | 280 | GM10332-PA | 104..278 | 45..220 | 576 | 68.4 | Plus |
Dsec\GM10176-PA | 229 | GM10176-PA | 1..227 | 1..219 | 574 | 59.6 | Plus |
Dsec\GM10178-PA | 286 | GM10178-PA | 108..285 | 41..219 | 529 | 65.6 | Plus |
Dsec\GM10175-PA | 247 | GM10175-PA | 1..246 | 1..219 | 523 | 53.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD18131-PA | 220 | GD18131-PA | 1..220 | 1..220 | 1116 | 98.6 | Plus |
Dsim\GD21293-PA | 309 | GD21293-PA | 133..307 | 45..220 | 576 | 68.4 | Plus |
Dsim\GD18128-PA | 229 | GD18128-PA | 1..227 | 1..219 | 574 | 59.6 | Plus |
Dsim\GD18130-PA | 286 | GD18130-PA | 108..285 | 41..219 | 528 | 65.6 | Plus |
Dsim\GD21291-PA | 275 | GD21291-PA | 99..275 | 41..218 | 518 | 63.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ14565-PA | 226 | GJ14565-PA | 1..225 | 1..220 | 741 | 69.9 | Plus |
Dvir\GJ14562-PA | 230 | GJ14562-PA | 1..228 | 1..219 | 605 | 59.7 | Plus |
Dvir\GJ14563-PA | 289 | GJ14563-PA | 113..289 | 41..218 | 583 | 64.8 | Plus |
Dvir\GJ14174-PA | 245 | GJ14174-PA | 1..243 | 1..220 | 533 | 52.4 | Plus |
Dvir\GJ14564-PA | 262 | GJ14564-PA | 88..261 | 45..219 | 516 | 63.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK13964-PA | 225 | GK13964-PA | 1..223 | 1..220 | 807 | 71.4 | Plus |
Dwil\GK13960-PA | 229 | GK13960-PA | 1..227 | 1..219 | 580 | 59.4 | Plus |
Dwil\GK13322-PA | 298 | GK13322-PA | 122..296 | 45..220 | 541 | 66.1 | Plus |
Dwil\GK13963-PA | 283 | GK13963-PA | 106..282 | 42..219 | 531 | 65.4 | Plus |
Dwil\GK13962-PA | 279 | GK13962-PA | 103..277 | 42..217 | 522 | 64.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE10627-PA | 220 | GE10627-PA | 1..220 | 1..220 | 1104 | 96.8 | Plus |
Dyak\GE10624-PA | 229 | GE10624-PA | 1..227 | 1..219 | 577 | 60.9 | Plus |
Dyak\GE23680-PA | 302 | GE23680-PA | 123..300 | 42..220 | 556 | 65.6 | Plus |
Dyak\GE10625-PA | 280 | GE10625-PA | 103..278 | 41..217 | 528 | 66.3 | Plus |
Dyak\GE10623-PA | 247 | GE10623-PA | 1..246 | 1..219 | 526 | 54.2 | Plus |