Clone RE17678 Report

Search the DGRC for RE17678

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:176
Well:78
Vector:pFlc-1
Associated Gene/TranscriptTwdlP-RA
Protein status:RE17678.pep: gold
Preliminary Size:663
Sequenced Size:768

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14240 2001-12-14 Blastp of sequenced clone
CG14240 2002-01-01 Sim4 clustering to Release 2
CG14240 2003-01-01 Sim4 clustering to Release 3
TwdlP 2008-04-29 Release 5.5 accounting
TwdlP 2008-08-15 Release 5.9 accounting
TwdlP 2008-12-18 5.12 accounting

Clone Sequence Records

RE17678.complete Sequence

768 bp (768 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071135

> RE17678.complete
ATTCGTCTAGAATATCTCGTAGGCATCGGGTCAATATGCGTGCCCTCATT
ATTCTAAGCATTGTGGCAGCGGCAAGTGCCGGTAGCTTGTCCGGATATAA
TTACGGACAAGGTGCGACAACCAGTATTGGGGGCAGTGGTGTATCCCCAG
TCCCTGCACTGGCGGGACCAGTTAGCTATAGTGCCGCTCCCCAGGCGTCA
GTTCACAAGGAGTTCTACAGCTTCTATGCCAACGATGACGACTTCGAGGA
TAAGGCTGCTCTCCAGAGGGCTCTTGCCTCGGTCAAGAAGAACATTCGCG
TCATCTTCATCAAGTCGCCGGAGAACCGTGGCTACGAGAATGCCGTTTTG
GCCCTGGCTAAACAGGCGGCCCAGCAGCAGACTGCCATATATGTGCTGCA
CAAACAGACTGATATCAACGAGCTGGCCCAGAAATTCAATGCCGTGCGCC
AGAATGCCAACAAGAAGCCCGAGGTGCACTTCGTCAAGTACAGGACACCT
GAGGATGCTGCCAATGCCCAGCGGGCAATCCAATCGCAGTACGATCAACT
CGGCGGCTCCAGCCAGTCCATCAACGGTGGCGTGGCTAATGCCATCAACT
TTGCATCCCAGGGAGCTGCTCCAGCACGCGTTACTCCTCAACAGGTGCCC
CAGAGCAACTACCTACCCGCCAACATCCTGAGTCGCCTGCGTCACTAGAA
AATCGATTGTTAAACGTTGTTTTCGAATAAAAGTTATCTAATTTGGTTAT
GCAAAAAAAAAAAAAAAA

RE17678.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:41:48
Subject Length Description Subject Range Query Range Score Percent Strand
TwdlP-RA 753 TwdlP-RA 2..752 1..751 3755 100 Plus
TwdlO-RA 690 TwdlO-RA 268..579 297..608 645 80.4 Plus
TwdlM-RA 1032 TwdlM-RA 683..805 458..580 300 82.9 Plus
TwdlM-RA 1032 TwdlM-RA 522..640 297..415 220 78.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:58:54
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 22443730..22444480 751..1 3725 99.7 Minus
chr3R 27901430 chr3R 22449235..22449546 608..297 645 80.4 Minus
chr3R 27901430 chr3R 22455577..22455885 300..608 480 77 Plus
chr3R 27901430 chr3R 22447902..22448191 586..297 475 77.6 Minus
chr3R 27901430 chr3R 22442842..22443125 297..580 445 77.1 Plus
chr3R 27901430 chr3R 22445821..22446084 560..297 435 77.7 Minus
chr3R 27901430 chr3R 22451204..22451476 569..297 405 76.6 Minus
chr3R 27901430 chr3R 22453425..22453675 297..547 385 76.9 Plus
chr3R 27901430 chr3R 22457307..22457564 303..560 270 73.6 Plus
chr3R 27901430 chr3R 22463751..22463826 457..532 185 82.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:38:50 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:58:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26620605..26621359 755..1 3760 99.9 Minus
3R 32079331 3R 26626119..26626430 608..297 645 80.4 Minus
3R 32079331 3R 26632462..26632770 300..608 480 77 Plus
3R 32079331 3R 26624784..26625073 586..297 460 77.2 Minus
3R 32079331 3R 26619721..26620004 297..580 445 77.1 Plus
3R 32079331 3R 26622700..26622963 560..297 435 77.7 Minus
3R 32079331 3R 26628090..26628362 569..297 405 76.6 Minus
3R 32079331 3R 26630310..26630560 297..547 385 76.9 Plus
3R 32079331 3R 26634193..26634450 303..560 270 73.6 Plus
3R 32079331 3R 26640630..26640705 457..532 185 82.9 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:08:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 26361436..26362190 755..1 3760 99.8 Minus
3R 31820162 3R 26366950..26367261 608..297 645 80.4 Minus
3R 31820162 3R 26373293..26373601 300..608 480 77 Plus
3R 31820162 3R 26363531..26363794 560..297 435 77.6 Minus
3R 31820162 3R 26365615..26365850 586..351 430 78.8 Minus
3R 31820162 3R 26360713..26360835 458..580 300 82.9 Plus
3R 31820162 3R 26368921..26369032 569..458 260 82.1 Minus
3R 31820162 3R 26371302..26371391 458..547 255 85.5 Plus
3R 31820162 3R 26360552..26360670 297..415 220 78.9 Plus
3R 31820162 3R 26371141..26371256 297..412 205 78.4 Plus
3R 31820162 3R 26381461..26381536 457..532 185 82.8 Plus
3R 31820162 3R 26375024..26375137 303..416 180 77.1 Plus
Blast to na_te.dros performed on 2019-03-16 20:58:53 has no hits.

RE17678.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:00:17 Download gff for RE17678.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 22443729..22444480 1..752 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:58:57 Download gff for RE17678.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlP-RA 1..663 36..698 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:07:15 Download gff for RE17678.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlP-RA 1..663 36..698 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:31:21 Download gff for RE17678.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlP-RA 1..663 36..698 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:31:38 Download gff for RE17678.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlP-RA 1..663 36..698 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:01:53 Download gff for RE17678.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlP-RA 1..663 36..698 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:35:49 Download gff for RE17678.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlP-RA 2..752 1..752 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:07:15 Download gff for RE17678.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlP-RA 2..752 1..752 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:31:21 Download gff for RE17678.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlP-RA 6..756 1..752 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:31:38 Download gff for RE17678.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlP-RA 2..752 1..752 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:01:53 Download gff for RE17678.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlP-RA 6..756 1..752 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:00:17 Download gff for RE17678.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26620608..26621359 1..752 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:00:17 Download gff for RE17678.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26620608..26621359 1..752 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:00:17 Download gff for RE17678.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26620608..26621359 1..752 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:31:21 Download gff for RE17678.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22446330..22447081 1..752 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:08:18 Download gff for RE17678.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26361439..26362190 1..752 99   Minus

RE17678.hyp Sequence

Translation from 2 to 697

> RE17678.hyp
SSRISRRHRVNMRALIILSIVAAASAGSLSGYNYGQGATTSIGGSGVSPV
PALAGPVSYSAAPQASVHKEFYSFYANDDDFEDKAALQRALASVKKNIRV
IFIKSPENRGYENAVLALAKQAAQQQTAIYVLHKQTDINELAQKFNAVRQ
NANKKPEVHFVKYRTPEDAANAQRAIQSQYDQLGGSSQSINGGVANAINF
ASQGAAPARVTPQQVPQSNYLPANILSRLRH*

RE17678.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:24:34
Subject Length Description Subject Range Query Range Score Percent Strand
TwdlP-PA 220 CG14240-PA 1..220 12..231 1099 100 Plus
TwdlN-PA 309 CG5476-PA 107..307 29..231 641 63.2 Plus
TwdlO-PA 229 CG6452-PA 1..227 12..230 612 60 Plus
TwdlL-PB 279 CG6447-PB 69..277 19..228 604 59.7 Plus
TwdlL-PA 285 CG6447-PA 75..283 19..228 604 59.7 Plus

RE17678.pep Sequence

Translation from 35 to 697

> RE17678.pep
MRALIILSIVAAASAGSLSGYNYGQGATTSIGGSGVSPVPALAGPVSYSA
APQASVHKEFYSFYANDDDFEDKAALQRALASVKKNIRVIFIKSPENRGY
ENAVLALAKQAAQQQTAIYVLHKQTDINELAQKFNAVRQNANKKPEVHFV
KYRTPEDAANAQRAIQSQYDQLGGSSQSINGGVANAINFASQGAAPARVT
PQQVPQSNYLPANILSRLRH*

RE17678.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 20:55:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18577-PA 228 GF18577-PA 1..228 1..220 851 80.3 Plus
Dana\GF18574-PA 231 GF18574-PA 1..229 1..219 564 57.3 Plus
Dana\GF16445-PA 295 GF16445-PA 116..292 42..219 551 65.4 Plus
Dana\GF18576-PA 281 GF18576-PA 103..280 41..219 537 65 Plus
Dana\GF16446-PA 245 GF16446-PA 1..245 1..220 521 51.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 20:55:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12183-PA 220 GG12183-PA 1..220 1..220 1091 96.8 Plus
Dere\GG12179-PA 239 GG12179-PA 1..239 1..220 585 54.4 Plus
Dere\GG12180-PA 229 GG12180-PA 1..227 1..219 578 60 Plus
Dere\GG11490-PA 285 GG11490-PA 106..283 42..220 568 67.8 Plus
Dere\GG11489-PA 274 GG11489-PA 81..273 50..219 545 60.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 20:55:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18880-PA 223 GH18880-PA 1..223 1..220 708 71 Plus
Dgri\GH18876-PA 232 GH18876-PA 1..231 1..219 613 56.4 Plus
Dgri\GH18727-PA 296 GH18727-PA 121..293 45..219 558 68.8 Plus
Dgri\GH18877-PA 228 GH18877-PA 1..226 1..219 543 56.7 Plus
Dgri\GH18728-PA 237 GH18728-PA 1..237 1..218 520 50.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:00:53
Subject Length Description Subject Range Query Range Score Percent Strand
TwdlP-PA 220 CG14240-PA 1..220 1..220 1099 100 Plus
TwdlN-PA 309 CG5476-PA 107..307 18..220 641 63.2 Plus
TwdlO-PA 229 CG6452-PA 1..227 1..219 612 60 Plus
TwdlL-PB 279 CG6447-PB 69..277 8..217 604 59.7 Plus
TwdlL-PA 285 CG6447-PA 75..283 8..217 604 59.7 Plus
TwdlB-PA 286 CG6478-PA 75..285 8..219 601 58.7 Plus
TwdlM-PA 288 CG5468-PA 75..288 10..218 600 56.9 Plus
TwdlK-PA 247 CG6460-PA 1..246 1..219 574 52.8 Plus
TwdlJ-PB 274 CG5471-PB 7..273 4..219 547 49.6 Plus
TwdlH-PA 241 CG31080-PA 1..237 1..215 541 52.5 Plus
TwdlD-PA 256 CG14243-PA 1..241 1..216 481 45.6 Plus
Tb-PA 283 CG5480-PA 43..238 14..206 430 47.4 Plus
TwdlQ-PA 245 CG14250-PA 1..242 1..215 411 41.1 Plus
TwdlR-PA 325 CG31081-PA 11..240 1..211 331 37.3 Plus
TwdlF-PA 354 CG14639-PA 137..288 54..202 232 36.4 Plus
TwdlW-PA 308 CG4060-PA 93..280 34..208 230 34.7 Plus
TwdlX-PA 346 CG32571-PA 115..272 30..183 228 36.9 Plus
TwdlG-PC 278 CG14643-PC 93..241 44..184 221 39.7 Plus
TwdlG-PB 278 CG14643-PB 93..241 44..184 221 39.7 Plus
TwdlG-PA 278 CG14643-PA 93..241 44..184 221 39.7 Plus
TwdlV-PA 251 CG14640-PA 1..202 1..184 220 32.7 Plus
TwdlY-PA 247 CG32570-PA 43..243 24..212 212 34.3 Plus
Twdlalpha-PA 388 CG32574-PA 117..301 19..186 212 31.6 Plus
TwdlS-PA 228 CG14242-PA 36..168 45..178 189 34.5 Plus
TwdlZ-PB 210 CG32569-PB 30..192 51..209 180 34.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 20:55:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24737-PA 231 GI24737-PA 1..229 1..220 761 66.1 Plus
Dmoj\GI24734-PA 227 GI24734-PA 1..225 1..219 579 57.4 Plus
Dmoj\GI22879-PA 308 GI22879-PA 129..308 39..220 533 64.1 Plus
Dmoj\GI24735-PA 315 GI24735-PA 143..315 45..218 524 62.9 Plus
Dmoj\GI24736-PA 280 GI24736-PA 101..280 39..220 507 61.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 20:55:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24443-PA 277 GL24443-PA 99..277 42..220 744 79.9 Plus
Dper\GL24439-PA 231 GL24439-PA 1..229 1..219 579 59.3 Plus
Dper\GL24787-PA 213 GL24787-PA 1..211 1..219 560 58.7 Plus
Dper\GL23101-PA 316 GL23101-PA 140..313 45..219 556 67.6 Plus
Dper\GL23102-PA 264 GL23102-PA 1..262 1..217 549 49.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 20:55:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12853-PA 225 GA12853-PA 1..225 1..220 817 74.2 Plus
Dpse\GA19605-PA 230 GA19605-PA 1..228 1..219 597 60.9 Plus
Dpse\GA18910-PA 316 GA18910-PA 140..313 45..219 556 67.6 Plus
Dpse\GA27141-PA 264 GA27141-PA 1..262 1..217 545 49.2 Plus
Dpse\GA26613-PA 250 GA26613-PA 1..249 1..219 531 53 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:55:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10179-PA 220 GM10179-PA 1..220 1..220 1102 97.3 Plus
Dsec\GM10332-PA 280 GM10332-PA 104..278 45..220 576 68.4 Plus
Dsec\GM10176-PA 229 GM10176-PA 1..227 1..219 574 59.6 Plus
Dsec\GM10178-PA 286 GM10178-PA 108..285 41..219 529 65.6 Plus
Dsec\GM10175-PA 247 GM10175-PA 1..246 1..219 523 53.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 20:55:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18131-PA 220 GD18131-PA 1..220 1..220 1116 98.6 Plus
Dsim\GD21293-PA 309 GD21293-PA 133..307 45..220 576 68.4 Plus
Dsim\GD18128-PA 229 GD18128-PA 1..227 1..219 574 59.6 Plus
Dsim\GD18130-PA 286 GD18130-PA 108..285 41..219 528 65.6 Plus
Dsim\GD21291-PA 275 GD21291-PA 99..275 41..218 518 63.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 20:55:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14565-PA 226 GJ14565-PA 1..225 1..220 741 69.9 Plus
Dvir\GJ14562-PA 230 GJ14562-PA 1..228 1..219 605 59.7 Plus
Dvir\GJ14563-PA 289 GJ14563-PA 113..289 41..218 583 64.8 Plus
Dvir\GJ14174-PA 245 GJ14174-PA 1..243 1..220 533 52.4 Plus
Dvir\GJ14564-PA 262 GJ14564-PA 88..261 45..219 516 63.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 20:55:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13964-PA 225 GK13964-PA 1..223 1..220 807 71.4 Plus
Dwil\GK13960-PA 229 GK13960-PA 1..227 1..219 580 59.4 Plus
Dwil\GK13322-PA 298 GK13322-PA 122..296 45..220 541 66.1 Plus
Dwil\GK13963-PA 283 GK13963-PA 106..282 42..219 531 65.4 Plus
Dwil\GK13962-PA 279 GK13962-PA 103..277 42..217 522 64.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 20:55:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10627-PA 220 GE10627-PA 1..220 1..220 1104 96.8 Plus
Dyak\GE10624-PA 229 GE10624-PA 1..227 1..219 577 60.9 Plus
Dyak\GE23680-PA 302 GE23680-PA 123..300 42..220 556 65.6 Plus
Dyak\GE10625-PA 280 GE10625-PA 103..278 41..217 528 66.3 Plus
Dyak\GE10623-PA 247 GE10623-PA 1..246 1..219 526 54.2 Plus