BDGP Sequence Production Resources |
Search the DGRC for RE17737
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 177 |
Well: | 37 |
Vector: | pFlc-1 |
Associated Gene/Transcript | RpL35A-RA |
Protein status: | RE17737.pep: gold |
Sequenced Size: | 633 |
Gene | Date | Evidence |
---|---|---|
CG2099 | 2001-12-14 | Blastp of sequenced clone |
CG2099 | 2002-01-01 | Sim4 clustering to Release 2 |
CG2099 | 2003-01-01 | Sim4 clustering to Release 3 |
RpL35A | 2008-04-29 | Release 5.5 accounting |
RpL35A | 2008-08-15 | Release 5.9 accounting |
RpL35A | 2008-12-18 | 5.12 accounting |
633 bp (633 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071136
> RE17737.complete TCCTTCTTTTCGCTTTCGTTTCCGGCGAACGGTGTTAATACATTCATCGA ACAACAAGCTAAGCCATGGCCGACACACAAGCCAAGTCCACTACTGCGCC CAAGGCCGCCAAGGCCCAGAAGGCTCCCAAGGCCGTCAAGGCGCCTAAGG CCGAGAAGCCCGCCGCCTCAGAGGCTAAAGTTTCCGCCAAGAAGTACAAG CGTCACGGACGCCTCTTCGCCAAGGCCGTCTTCACCGGCTACAAGCGTGG TCTGAGGAACCAGCACGAGAACCAGGCCATCCTCAAGATTGAGGGCGCCC GCCGCAAGGAGCACGGATCCTTCTACGTTGGGAAGCGTTGCGTCTATGTC TACAAGGCCGAGACCAAGAAGTGCGTGCCGCAGCATCCCGAGCGCAAGAC CCGCGTCCGCGCTGTCTGGGGCAAGGTCACCCGCATCCACGGCAACACCG GCGCTGTGCGTGCCCGTTTCAACAGGAACCTGCCCGGTCATGCCATGGGC CACCGCATCCGCATCATGCTGTACCCATCAAGGATTTAAGTTAATATCCG ACTTGAATTACTGACCTGCAGGAGTAAAAAATCCGTTTTACATTAAATGA AACACTTTAAATTTAATAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 1291812..1292042 | 287..57 | 1155 | 100 | Minus |
chr3R | 27901430 | chr3R | 1291459..1291688 | 515..286 | 1150 | 100 | Minus |
chr3R | 27901430 | chr3R | 1291289..1291390 | 617..516 | 510 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 5466153..5466383 | 287..57 | 1155 | 100 | Minus |
3R | 32079331 | 3R | 5465800..5466029 | 515..286 | 1150 | 100 | Minus |
3R | 32079331 | 3R | 5465625..5465731 | 622..516 | 520 | 99.1 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 5206984..5207214 | 287..57 | 1155 | 100 | Minus |
3R | 31820162 | 3R | 5206631..5206860 | 515..286 | 1150 | 100 | Minus |
3R | 31820162 | 3R | 5206456..5206562 | 622..516 | 520 | 99 | Minus |
3R | 31820162 | 3R | 5207811..5207839 | 58..30 | 145 | 100 | Minus |
3R | 31820162 | 3R | 5207900..5207928 | 29..1 | 145 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
springer | 7546 | springer SPRINGER 7546bp Derived from BACR06P08 by Sue Celniker, 29 March 2001. | 7106..7141 | 305..270 | 108 | 77.8 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 1291812..1292040 | 59..287 | 100 | <- | Minus |
chr3R | 1292639..1292667 | 30..58 | 100 | <- | Minus |
chr3R | 1292728..1292756 | 1..29 | 100 | Minus | |
chr3R | 1291289..1291390 | 516..617 | 100 | <- | Minus |
chr3R | 1291459..1291686 | 288..515 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL35A-RA | 1..474 | 66..539 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL35A-RA | 1..474 | 66..539 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL35A-RA | 1..474 | 66..539 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL35A-RA | 1..474 | 66..539 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL35A-RA | 1..474 | 66..539 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL35A-RA | 1..617 | 1..617 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL35A-RA | 1..617 | 1..617 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL35A-RA | 5..621 | 1..617 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL35A-RA | 1..617 | 1..617 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL35A-RA | 5..621 | 1..617 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 5465630..5465731 | 516..617 | 100 | <- | Minus |
3R | 5465800..5466027 | 288..515 | 100 | <- | Minus |
3R | 5466153..5466381 | 59..287 | 100 | <- | Minus |
3R | 5466980..5467008 | 30..58 | 100 | <- | Minus |
3R | 5467069..5467097 | 1..29 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 5465630..5465731 | 516..617 | 100 | <- | Minus |
3R | 5465800..5466027 | 288..515 | 100 | <- | Minus |
3R | 5466153..5466381 | 59..287 | 100 | <- | Minus |
3R | 5466980..5467008 | 30..58 | 100 | <- | Minus |
3R | 5467069..5467097 | 1..29 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 5465630..5465731 | 516..617 | 100 | <- | Minus |
3R | 5465800..5466027 | 288..515 | 100 | <- | Minus |
3R | 5466153..5466381 | 59..287 | 100 | <- | Minus |
3R | 5466980..5467008 | 30..58 | 100 | <- | Minus |
3R | 5467069..5467097 | 1..29 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 1291352..1291453 | 516..617 | 100 | <- | Minus |
arm_3R | 1291522..1291749 | 288..515 | 100 | <- | Minus |
arm_3R | 1291875..1292103 | 59..287 | 100 | <- | Minus |
arm_3R | 1292702..1292730 | 30..58 | 100 | <- | Minus |
arm_3R | 1292791..1292819 | 1..29 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 5206631..5206858 | 288..515 | 100 | <- | Minus |
3R | 5206984..5207212 | 59..287 | 100 | <- | Minus |
3R | 5207811..5207839 | 30..58 | 100 | <- | Minus |
3R | 5207900..5207928 | 1..29 | 100 | Minus | |
3R | 5206461..5206562 | 516..617 | 100 | <- | Minus |
Translation from 65 to 538
> RE17737.pep MADTQAKSTTAPKAAKAQKAPKAVKAPKAEKPAASEAKVSAKKYKRHGRL FAKAVFTGYKRGLRNQHENQAILKIEGARRKEHGSFYVGKRCVYVYKAET KKCVPQHPERKTRVRAVWGKVTRIHGNTGAVRARFNRNLPGHAMGHRIRI MLYPSRI*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF17709-PA | 172 | GF17709-PA | 40..172 | 27..157 | 667 | 97 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG11012-PA | 157 | GG11012-PA | 1..157 | 1..157 | 798 | 97.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18998-PA | 163 | GH18998-PA | 50..163 | 44..157 | 598 | 96.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
RpL35A-PA | 157 | CG2099-PA | 1..157 | 1..157 | 819 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI24500-PA | 159 | GI24500-PA | 37..159 | 35..157 | 627 | 94.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL22165-PA | 159 | GL22165-PA | 36..159 | 34..157 | 641 | 96.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA15239-PA | 159 | GA15239-PA | 36..159 | 34..157 | 641 | 96.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM10633-PA | 157 | GM10633-PA | 1..157 | 1..157 | 797 | 97.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD19617-PA | 157 | GD19617-PA | 1..157 | 1..157 | 800 | 98.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ24565-PA | 159 | GJ24565-PA | 37..159 | 35..157 | 630 | 95.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK22837-PA | 160 | GK22837-PA | 38..160 | 35..157 | 641 | 95.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE25280-PA | 157 | GE25280-PA | 1..157 | 1..157 | 722 | 95.5 | Plus |
Translation from 65 to 538
> RE17737.hyp MADTQAKSTTAPKAAKAQKAPKAVKAPKAEKPAASEAKVSAKKYKRHGRL FAKAVFTGYKRGLRNQHENQAILKIEGARRKEHGSFYVGKRCVYVYKAET KKCVPQHPERKTRVRAVWGKVTRIHGNTGAVRARFNRNLPGHAMGHRIRI MLYPSRI*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
RpL35A-PA | 157 | CG2099-PA | 1..157 | 1..157 | 819 | 100 | Plus |