BDGP Sequence Production Resources |
Search the DGRC for RE17834
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 178 |
Well: | 34 |
Vector: | pFlc-1 |
Associated Gene/Transcript | bs-RA |
Protein status: | RE17834.pep: gold |
Preliminary Size: | 1835 |
Sequenced Size: | 2254 |
Gene | Date | Evidence |
---|---|---|
CG3411 | 2002-01-01 | Sim4 clustering to Release 2 |
CG3411 | 2002-04-04 | Blastp of sequenced clone |
CG3411 | 2003-01-01 | Sim4 clustering to Release 3 |
bs | 2008-04-29 | Release 5.5 accounting |
bs | 2008-08-15 | Release 5.9 accounting |
bs | 2008-12-18 | 5.12 accounting |
2254 bp assembled on 2007-04-17
GenBank Submission: AY095071
> RE17834.complete GACTGTCAGCTGTCAGTTTTCCTGTGTGTGTGCGCGCGTAAGTGTGTGCG TGCACTTAAGAAACTTAAATTCGCGTTCTTGGCCAAAAAAAACCCGGGTT TTTAATAAGTTATAGCGTTTTCCTCGACTGAGAACTTGGCCCCCAGGCAG ACGGGCACAAAAACCGCCCCAGAAACGCGCCCGCCGCCGCCAAAAAGGCC GAAAACGCCAGCGAAACGCGCGCGTTGAGTGTTTTCTGTGTGGTTTTATT TTTGGAATATAAAGCGATCTGATCTGAAAAGTGTGCCGCGGCCGGATTCT AGATATTCAGATTCCCAGCACCCGAAACCCAAACGCAATAATAGACGCGC GCGGTGCCTTGGATCTCTACGGCTCCACGGTGGAGAACTTTTACCTCAGA ATGGATCCGACGCGAGGTGACTCGCGGTACAATCTCAACTACTCGATGAG TAGCATAGGGCTGAGCCTGGCGGATCCGGCGGACATGTACGGCAACCCGG CCCTGGGGGCGGGCCGCCCGCCCTCCGGTGGCCTGCTCCAGAACATGGGC GGCGTTCCGCCGATGCAGCGCCCCAATCCCGCGGCAGGAGCACCCCCTGC CCCGCAGTGCCAAACGCTCCACAGCCCACAGCACGCCTCCCAGCAGCAGC AGCAGCAACAACAGCAGCAGCAGCAACACCAGCAGCAGCAACAACAGCAG CAGCAGCATCCCCAGCAGCAACGCGGCCTTAAGCGCTCCGGCAGCGACTG CTACGAGGATCACCACCGCTCGTCCGGCGGACTCACCCTCCAAGGACTGG ACAACGTGGCCAGCGGAGCCGTCGACGACAGCGTAGACAACTACAACCCG CTGCCCAACAAGAAGTCTCCGCCTGCCAACGGCAAAAAGACAAAGGGACG TGTCAAAATCAAAATGGAATACATCGACAATAAGCTGCGTCGCTACACGA CCTTCTCCAAGCGCAAGACGGGCATAATGAAGAAGGCCTACGAGCTGTCC ACGCTGACCGGGACGCAGGTGATGCTGCTGGTGGCCAGCGAGACGGGCCA CGTGTACACATTTGCCACGCGCAAGCTGCAGCCGATGATCACCTCGGAGG CGGGAAAGCAGCTCATCCAGACCTGCCTCAACTCGCCGGATCCGCCCAGT GTGGGCGGCGGCGACCAACGGATGTCGGCCACCGGGTTCGAGGAGACGGA GCTCAGCTACAACATCGCCGACGAGGACTCGAAAGATGACCGATCGCCTA CCTCGTCGGGCAACGAGTCGGATGATTCGTCGGACGTGGAGATGCCGGCG GAGGCTGCTGAGGTGGCAACCAAGTTGCCGGCCAGCAAAACAGAGGTATC AGCGCCTCCAGCAGCCTCATGCTCGGCGGCCACCGCTTCCTCTGGCCACA AAACCATGCCAGCATTGAACTATCAGACTGACACCAACAGCGGACCCTCA ACGTCCACCGCCGCCGGAGGAGGAGGCTCGGCGGACAGCAAGTACGTCTA CTCCGCTGCCTCGATTGCCAACATACCGCAGAAGATGCTGAGGCAGCTCA TCCAGTCAGGCCACTTGCAGGTGCACGCCGAAGAGGATGGCAACCAGTAT GTGACCATACCGCTCAGCTCCACAGCAGCCAATCTGATAAAGAGCAATAA GCTAACAGCCTCTGGATCAGGAGCCTCAGGATCGGGAACGCCCGTCAAGA ACGATGCCAGTGCCGATAAGCCCTTGACCATCAAACAGGAGTTCGATTAG CCCCCAGCTACGCCTACTGCTTATCATGAGATAACTGAGAACTGCGTTTA TCCACACTTGCCCACACCATCTGGAAAAATCATCAGCAGGAGATTACCAT TACTCACCCACTACTCTCTTAAAGTCTATCCAAAGTTTTCACGTCATCAC CGGGGATGACGATCGCCTGCTAAGTCTAAGTCATACTATATCTACTATAC CGTATATATACTATTTTTTATACCTATACAAGGAGAAGTGAAAAAAAACA CCCTGAGCTGGTACCCAAGATGCCAGCGGCATATCTACATACGTAAGTTT TAAAAGTTTTGCAAGTTATACAACGTACAGGCATCTGCTGATATCGAGAT TGTATGAGAAATGGAAAATGAGGATGATATGGATGTTCCTAAATCGCAGA GATCATGTTGCTTTGTTACTAGTTTATATTGTTTTATTATACAATACATA AATACATATAAACAACTTTTTTTGCATAAAACCAAAAGAAAAAAAAAAAA AAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 20229655..20230640 | 1..986 | 4900 | 99.8 | Plus |
chr2R | 21145070 | chr2R | 20261771..20262420 | 1586..2235 | 3235 | 99.8 | Plus |
chr2R | 21145070 | chr2R | 20261360..20261711 | 1235..1586 | 1760 | 100 | Plus |
chr2R | 21145070 | chr2R | 20234170..20234421 | 984..1235 | 1260 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 24343690..24344675 | 1..986 | 4930 | 100 | Plus |
2R | 25286936 | 2R | 24375826..24376475 | 1586..2235 | 3235 | 99.8 | Plus |
2R | 25286936 | 2R | 24375415..24375766 | 1235..1586 | 1760 | 100 | Plus |
2R | 25286936 | 2R | 24348210..24348461 | 984..1235 | 1260 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 24344889..24345874 | 1..986 | 4930 | 100 | Plus |
2R | 25260384 | 2R | 24377025..24377674 | 1586..2235 | 3235 | 99.8 | Plus |
2R | 25260384 | 2R | 24376614..24376965 | 1235..1586 | 1760 | 100 | Plus |
2R | 25260384 | 2R | 24349409..24349660 | 984..1235 | 1260 | 100 | Plus |
3R | 31820162 | 3R | 23133489..23133573 | 726..642 | 275 | 88.2 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
S2 | 1735 | S2 S2 1735bp | 92..171 | 2236..2159 | 152 | 67.5 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 20229655..20230294 | 1..640 | 95 | == | Plus |
chr2R | 20230375..20230639 | 721..985 | 100 | -> | Plus |
chr2R | 20234172..20234420 | 986..1234 | 100 | -> | Plus |
chr2R | 20261360..20261711 | 1235..1586 | 100 | -> | Plus |
chr2R | 20261772..20262421 | 1587..2238 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
bs-RA | 1..1350 | 401..1750 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
bs-RA | 1..1350 | 401..1750 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
bs-RA | 1..1350 | 401..1750 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
bs-RA | 1..1350 | 401..1750 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
bs-RA | 1..1350 | 401..1750 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
bs-RA | 1..2212 | 24..2235 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
bs-RA | 1..2212 | 24..2235 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
bs-RC | 830..3062 | 1..2233 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
bs-RA | 1..2212 | 24..2235 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
bs-RC | 830..3062 | 1..2233 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 24343690..24344674 | 1..985 | 100 | -> | Plus |
2R | 24348212..24348460 | 986..1234 | 100 | -> | Plus |
2R | 24375415..24375766 | 1235..1586 | 100 | -> | Plus |
2R | 24375827..24376476 | 1587..2238 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 24343690..24344674 | 1..985 | 100 | -> | Plus |
2R | 24348212..24348460 | 986..1234 | 100 | -> | Plus |
2R | 24375415..24375766 | 1235..1586 | 100 | -> | Plus |
2R | 24375827..24376476 | 1587..2238 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 24343690..24344674 | 1..985 | 100 | -> | Plus |
2R | 24348212..24348460 | 986..1234 | 100 | -> | Plus |
2R | 24375415..24375766 | 1235..1586 | 100 | -> | Plus |
2R | 24375827..24376476 | 1587..2238 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 20231213..20232197 | 1..985 | 100 | -> | Plus |
arm_2R | 20235735..20235983 | 986..1234 | 100 | -> | Plus |
arm_2R | 20262938..20263289 | 1235..1586 | 100 | -> | Plus |
arm_2R | 20263350..20263999 | 1587..2238 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 24344907..24345891 | 1..985 | 100 | -> | Plus |
2R | 24349429..24349677 | 986..1234 | 100 | -> | Plus |
2R | 24376632..24376983 | 1235..1586 | 100 | -> | Plus |
2R | 24377044..24377693 | 1587..2238 | 99 | Plus |
Translation from 400 to 1749
> RE17834.pep MDPTRGDSRYNLNYSMSSIGLSLADPADMYGNPALGAGRPPSGGLLQNMG GVPPMQRPNPAAGAPPAPQCQTLHSPQHASQQQQQQQQQQQQHQQQQQQQ QQHPQQQRGLKRSGSDCYEDHHRSSGGLTLQGLDNVASGAVDDSVDNYNP LPNKKSPPANGKKTKGRVKIKMEYIDNKLRRYTTFSKRKTGIMKKAYELS TLTGTQVMLLVASETGHVYTFATRKLQPMITSEAGKQLIQTCLNSPDPPS VGGGDQRMSATGFEETELSYNIADEDSKDDRSPTSSGNESDDSSDVEMPA EAAEVATKLPASKTEVSAPPAASCSAATASSGHKTMPALNYQTDTNSGPS TSTAAGGGGSADSKYVYSAASIANIPQKMLRQLIQSGHLQVHAEEDGNQY VTIPLSSTAANLIKSNKLTASGSGASGSGTPVKNDASADKPLTIKQEFD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11392-PA | 473 | GF11392-PA | 1..473 | 1..449 | 1640 | 76.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG22961-PA | 446 | GG22961-PA | 1..446 | 1..449 | 2278 | 96.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH20989-PA | 478 | GH20989-PA | 1..478 | 1..449 | 1351 | 67.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
bs-PC | 449 | CG3411-PC | 1..449 | 1..449 | 2321 | 100 | Plus |
bs-PA | 449 | CG3411-PA | 1..449 | 1..449 | 2321 | 100 | Plus |
bs-PB | 355 | CG3411-PB | 1..278 | 1..278 | 1465 | 100 | Plus |
Hr38-PD | 836 | CG1864-PD | 45..430 | 73..432 | 162 | 24.4 | Plus |
Hr38-PB | 1078 | CG1864-PB | 287..672 | 73..432 | 162 | 24.4 | Plus |
ec-PA | 1712 | CG2904-PA | 1412..1494 | 52..131 | 160 | 43.4 | Plus |
ec-PB | 1746 | CG2904-PB | 1446..1528 | 52..131 | 160 | 43.4 | Plus |
ec-PC | 1765 | CG2904-PC | 1465..1547 | 52..131 | 160 | 43.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI21322-PA | 464 | GI21322-PA | 1..464 | 1..449 | 1396 | 68.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL20046-PA | 478 | GL20046-PA | 1..478 | 1..449 | 1541 | 73.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA17433-PA | 479 | GA17433-PA | 1..479 | 1..449 | 1537 | 74.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM11854-PA | 449 | GM11854-PA | 1..449 | 1..449 | 2340 | 98.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD11852-PA | 449 | GD11852-PA | 1..449 | 1..449 | 2340 | 98.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ21595-PA | 468 | GJ21595-PA | 1..468 | 1..449 | 1338 | 71.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK22205-PA | 499 | GK22205-PA | 1..499 | 1..449 | 1487 | 69.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE14398-PA | 453 | GE14398-PA | 1..453 | 1..449 | 2287 | 97.1 | Plus |
Translation from 400 to 1749
> RE17834.hyp MDPTRGDSRYNLNYSMSSIGLSLADPADMYGNPALGAGRPPSGGLLQNMG GVPPMQRPNPAAGAPPAPQCQTLHSPQHASQQQQQQQQQQQQHQQQQQQQ QQHPQQQRGLKRSGSDCYEDHHRSSGGLTLQGLDNVASGAVDDSVDNYNP LPNKKSPPANGKKTKGRVKIKMEYIDNKLRRYTTFSKRKTGIMKKAYELS TLTGTQVMLLVASETGHVYTFATRKLQPMITSEAGKQLIQTCLNSPDPPS VGGGDQRMSATGFEETELSYNIADEDSKDDRSPTSSGNESDDSSDVEMPA EAAEVATKLPASKTEVSAPPAASCSAATASSGHKTMPALNYQTDTNSGPS TSTAAGGGGSADSKYVYSAASIANIPQKMLRQLIQSGHLQVHAEEDGNQY VTIPLSSTAANLIKSNKLTASGSGASGSGTPVKNDASADKPLTIKQEFD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
bs-PC | 449 | CG3411-PC | 1..449 | 1..449 | 2321 | 100 | Plus |
bs-PA | 449 | CG3411-PA | 1..449 | 1..449 | 2321 | 100 | Plus |
bs-PB | 355 | CG3411-PB | 1..278 | 1..278 | 1465 | 100 | Plus |
Hr38-PD | 836 | CG1864-PD | 45..430 | 73..432 | 162 | 24.4 | Plus |
Hr38-PB | 1078 | CG1864-PB | 287..672 | 73..432 | 162 | 24.4 | Plus |