Clone RE17834 Report

Search the DGRC for RE17834

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:178
Well:34
Vector:pFlc-1
Associated Gene/Transcriptbs-RA
Protein status:RE17834.pep: gold
Preliminary Size:1835
Sequenced Size:2254

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3411 2002-01-01 Sim4 clustering to Release 2
CG3411 2002-04-04 Blastp of sequenced clone
CG3411 2003-01-01 Sim4 clustering to Release 3
bs 2008-04-29 Release 5.5 accounting
bs 2008-08-15 Release 5.9 accounting
bs 2008-12-18 5.12 accounting

Clone Sequence Records

RE17834.complete Sequence

2254 bp assembled on 2007-04-17

GenBank Submission: AY095071

> RE17834.complete
GACTGTCAGCTGTCAGTTTTCCTGTGTGTGTGCGCGCGTAAGTGTGTGCG
TGCACTTAAGAAACTTAAATTCGCGTTCTTGGCCAAAAAAAACCCGGGTT
TTTAATAAGTTATAGCGTTTTCCTCGACTGAGAACTTGGCCCCCAGGCAG
ACGGGCACAAAAACCGCCCCAGAAACGCGCCCGCCGCCGCCAAAAAGGCC
GAAAACGCCAGCGAAACGCGCGCGTTGAGTGTTTTCTGTGTGGTTTTATT
TTTGGAATATAAAGCGATCTGATCTGAAAAGTGTGCCGCGGCCGGATTCT
AGATATTCAGATTCCCAGCACCCGAAACCCAAACGCAATAATAGACGCGC
GCGGTGCCTTGGATCTCTACGGCTCCACGGTGGAGAACTTTTACCTCAGA
ATGGATCCGACGCGAGGTGACTCGCGGTACAATCTCAACTACTCGATGAG
TAGCATAGGGCTGAGCCTGGCGGATCCGGCGGACATGTACGGCAACCCGG
CCCTGGGGGCGGGCCGCCCGCCCTCCGGTGGCCTGCTCCAGAACATGGGC
GGCGTTCCGCCGATGCAGCGCCCCAATCCCGCGGCAGGAGCACCCCCTGC
CCCGCAGTGCCAAACGCTCCACAGCCCACAGCACGCCTCCCAGCAGCAGC
AGCAGCAACAACAGCAGCAGCAGCAACACCAGCAGCAGCAACAACAGCAG
CAGCAGCATCCCCAGCAGCAACGCGGCCTTAAGCGCTCCGGCAGCGACTG
CTACGAGGATCACCACCGCTCGTCCGGCGGACTCACCCTCCAAGGACTGG
ACAACGTGGCCAGCGGAGCCGTCGACGACAGCGTAGACAACTACAACCCG
CTGCCCAACAAGAAGTCTCCGCCTGCCAACGGCAAAAAGACAAAGGGACG
TGTCAAAATCAAAATGGAATACATCGACAATAAGCTGCGTCGCTACACGA
CCTTCTCCAAGCGCAAGACGGGCATAATGAAGAAGGCCTACGAGCTGTCC
ACGCTGACCGGGACGCAGGTGATGCTGCTGGTGGCCAGCGAGACGGGCCA
CGTGTACACATTTGCCACGCGCAAGCTGCAGCCGATGATCACCTCGGAGG
CGGGAAAGCAGCTCATCCAGACCTGCCTCAACTCGCCGGATCCGCCCAGT
GTGGGCGGCGGCGACCAACGGATGTCGGCCACCGGGTTCGAGGAGACGGA
GCTCAGCTACAACATCGCCGACGAGGACTCGAAAGATGACCGATCGCCTA
CCTCGTCGGGCAACGAGTCGGATGATTCGTCGGACGTGGAGATGCCGGCG
GAGGCTGCTGAGGTGGCAACCAAGTTGCCGGCCAGCAAAACAGAGGTATC
AGCGCCTCCAGCAGCCTCATGCTCGGCGGCCACCGCTTCCTCTGGCCACA
AAACCATGCCAGCATTGAACTATCAGACTGACACCAACAGCGGACCCTCA
ACGTCCACCGCCGCCGGAGGAGGAGGCTCGGCGGACAGCAAGTACGTCTA
CTCCGCTGCCTCGATTGCCAACATACCGCAGAAGATGCTGAGGCAGCTCA
TCCAGTCAGGCCACTTGCAGGTGCACGCCGAAGAGGATGGCAACCAGTAT
GTGACCATACCGCTCAGCTCCACAGCAGCCAATCTGATAAAGAGCAATAA
GCTAACAGCCTCTGGATCAGGAGCCTCAGGATCGGGAACGCCCGTCAAGA
ACGATGCCAGTGCCGATAAGCCCTTGACCATCAAACAGGAGTTCGATTAG
CCCCCAGCTACGCCTACTGCTTATCATGAGATAACTGAGAACTGCGTTTA
TCCACACTTGCCCACACCATCTGGAAAAATCATCAGCAGGAGATTACCAT
TACTCACCCACTACTCTCTTAAAGTCTATCCAAAGTTTTCACGTCATCAC
CGGGGATGACGATCGCCTGCTAAGTCTAAGTCATACTATATCTACTATAC
CGTATATATACTATTTTTTATACCTATACAAGGAGAAGTGAAAAAAAACA
CCCTGAGCTGGTACCCAAGATGCCAGCGGCATATCTACATACGTAAGTTT
TAAAAGTTTTGCAAGTTATACAACGTACAGGCATCTGCTGATATCGAGAT
TGTATGAGAAATGGAAAATGAGGATGATATGGATGTTCCTAAATCGCAGA
GATCATGTTGCTTTGTTACTAGTTTATATTGTTTTATTATACAATACATA
AATACATATAAACAACTTTTTTTGCATAAAACCAAAAGAAAAAAAAAAAA
AAAA

RE17834.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:48:44
Subject Length Description Subject Range Query Range Score Percent Strand
bs-RA 2514 bs-RA 278..2512 1..2235 11160 99.9 Plus
bs.a 3093 bs.a 857..3091 1..2235 11160 99.9 Plus
bs.d 3240 bs.d 278..1512 1..1235 6175 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:37:01
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 20229655..20230640 1..986 4900 99.8 Plus
chr2R 21145070 chr2R 20261771..20262420 1586..2235 3235 99.8 Plus
chr2R 21145070 chr2R 20261360..20261711 1235..1586 1760 100 Plus
chr2R 21145070 chr2R 20234170..20234421 984..1235 1260 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:38:55 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:36:59
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24343690..24344675 1..986 4930 100 Plus
2R 25286936 2R 24375826..24376475 1586..2235 3235 99.8 Plus
2R 25286936 2R 24375415..24375766 1235..1586 1760 100 Plus
2R 25286936 2R 24348210..24348461 984..1235 1260 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:08:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 24344889..24345874 1..986 4930 100 Plus
2R 25260384 2R 24377025..24377674 1586..2235 3235 99.8 Plus
2R 25260384 2R 24376614..24376965 1235..1586 1760 100 Plus
2R 25260384 2R 24349409..24349660 984..1235 1260 100 Plus
3R 31820162 3R 23133489..23133573 726..642 275 88.2 Minus
Blast to na_te.dros performed 2019-03-16 21:37:00
Subject Length Description Subject Range Query Range Score Percent Strand
S2 1735 S2 S2 1735bp 92..171 2236..2159 152 67.5 Minus

RE17834.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:38:12 Download gff for RE17834.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 20229655..20230294 1..640 95 == Plus
chr2R 20230375..20230639 721..985 100 -> Plus
chr2R 20234172..20234420 986..1234 100 -> Plus
chr2R 20261360..20261711 1235..1586 100 -> Plus
chr2R 20261772..20262421 1587..2238 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:09:14 Download gff for RE17834.complete
Subject Subject Range Query Range Percent Splice Strand
bs-RA 1..1350 401..1750 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:43:29 Download gff for RE17834.complete
Subject Subject Range Query Range Percent Splice Strand
bs-RA 1..1350 401..1750 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:02:59 Download gff for RE17834.complete
Subject Subject Range Query Range Percent Splice Strand
bs-RA 1..1350 401..1750 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:24:10 Download gff for RE17834.complete
Subject Subject Range Query Range Percent Splice Strand
bs-RA 1..1350 401..1750 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:25:33 Download gff for RE17834.complete
Subject Subject Range Query Range Percent Splice Strand
bs-RA 1..1350 401..1750 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:09:13 Download gff for RE17834.complete
Subject Subject Range Query Range Percent Splice Strand
bs-RA 1..2212 24..2235 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:43:29 Download gff for RE17834.complete
Subject Subject Range Query Range Percent Splice Strand
bs-RA 1..2212 24..2235 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:02:59 Download gff for RE17834.complete
Subject Subject Range Query Range Percent Splice Strand
bs-RC 830..3062 1..2233 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:24:10 Download gff for RE17834.complete
Subject Subject Range Query Range Percent Splice Strand
bs-RA 1..2212 24..2235 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:25:33 Download gff for RE17834.complete
Subject Subject Range Query Range Percent Splice Strand
bs-RC 830..3062 1..2233 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:38:12 Download gff for RE17834.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24343690..24344674 1..985 100 -> Plus
2R 24348212..24348460 986..1234 100 -> Plus
2R 24375415..24375766 1235..1586 100 -> Plus
2R 24375827..24376476 1587..2238 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:38:12 Download gff for RE17834.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24343690..24344674 1..985 100 -> Plus
2R 24348212..24348460 986..1234 100 -> Plus
2R 24375415..24375766 1235..1586 100 -> Plus
2R 24375827..24376476 1587..2238 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:38:12 Download gff for RE17834.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24343690..24344674 1..985 100 -> Plus
2R 24348212..24348460 986..1234 100 -> Plus
2R 24375415..24375766 1235..1586 100 -> Plus
2R 24375827..24376476 1587..2238 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:02:59 Download gff for RE17834.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20231213..20232197 1..985 100 -> Plus
arm_2R 20235735..20235983 986..1234 100 -> Plus
arm_2R 20262938..20263289 1235..1586 100 -> Plus
arm_2R 20263350..20263999 1587..2238 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:57:12 Download gff for RE17834.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24344907..24345891 1..985 100 -> Plus
2R 24349429..24349677 986..1234 100 -> Plus
2R 24376632..24376983 1235..1586 100 -> Plus
2R 24377044..24377693 1587..2238 99   Plus

RE17834.pep Sequence

Translation from 400 to 1749

> RE17834.pep
MDPTRGDSRYNLNYSMSSIGLSLADPADMYGNPALGAGRPPSGGLLQNMG
GVPPMQRPNPAAGAPPAPQCQTLHSPQHASQQQQQQQQQQQQHQQQQQQQ
QQHPQQQRGLKRSGSDCYEDHHRSSGGLTLQGLDNVASGAVDDSVDNYNP
LPNKKSPPANGKKTKGRVKIKMEYIDNKLRRYTTFSKRKTGIMKKAYELS
TLTGTQVMLLVASETGHVYTFATRKLQPMITSEAGKQLIQTCLNSPDPPS
VGGGDQRMSATGFEETELSYNIADEDSKDDRSPTSSGNESDDSSDVEMPA
EAAEVATKLPASKTEVSAPPAASCSAATASSGHKTMPALNYQTDTNSGPS
TSTAAGGGGSADSKYVYSAASIANIPQKMLRQLIQSGHLQVHAEEDGNQY
VTIPLSSTAANLIKSNKLTASGSGASGSGTPVKNDASADKPLTIKQEFD*

RE17834.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 22:29:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11392-PA 473 GF11392-PA 1..473 1..449 1640 76.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 22:29:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22961-PA 446 GG22961-PA 1..446 1..449 2278 96.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 22:29:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20989-PA 478 GH20989-PA 1..478 1..449 1351 67.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:15:03
Subject Length Description Subject Range Query Range Score Percent Strand
bs-PC 449 CG3411-PC 1..449 1..449 2321 100 Plus
bs-PA 449 CG3411-PA 1..449 1..449 2321 100 Plus
bs-PB 355 CG3411-PB 1..278 1..278 1465 100 Plus
Hr38-PD 836 CG1864-PD 45..430 73..432 162 24.4 Plus
Hr38-PB 1078 CG1864-PB 287..672 73..432 162 24.4 Plus
ec-PA 1712 CG2904-PA 1412..1494 52..131 160 43.4 Plus
ec-PB 1746 CG2904-PB 1446..1528 52..131 160 43.4 Plus
ec-PC 1765 CG2904-PC 1465..1547 52..131 160 43.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 22:29:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21322-PA 464 GI21322-PA 1..464 1..449 1396 68.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 22:29:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20046-PA 478 GL20046-PA 1..478 1..449 1541 73.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 22:29:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17433-PA 479 GA17433-PA 1..479 1..449 1537 74.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 22:29:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11854-PA 449 GM11854-PA 1..449 1..449 2340 98.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 22:29:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11852-PA 449 GD11852-PA 1..449 1..449 2340 98.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 22:29:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21595-PA 468 GJ21595-PA 1..468 1..449 1338 71.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 22:29:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22205-PA 499 GK22205-PA 1..499 1..449 1487 69.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 22:29:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14398-PA 453 GE14398-PA 1..453 1..449 2287 97.1 Plus

RE17834.hyp Sequence

Translation from 400 to 1749

> RE17834.hyp
MDPTRGDSRYNLNYSMSSIGLSLADPADMYGNPALGAGRPPSGGLLQNMG
GVPPMQRPNPAAGAPPAPQCQTLHSPQHASQQQQQQQQQQQQHQQQQQQQ
QQHPQQQRGLKRSGSDCYEDHHRSSGGLTLQGLDNVASGAVDDSVDNYNP
LPNKKSPPANGKKTKGRVKIKMEYIDNKLRRYTTFSKRKTGIMKKAYELS
TLTGTQVMLLVASETGHVYTFATRKLQPMITSEAGKQLIQTCLNSPDPPS
VGGGDQRMSATGFEETELSYNIADEDSKDDRSPTSSGNESDDSSDVEMPA
EAAEVATKLPASKTEVSAPPAASCSAATASSGHKTMPALNYQTDTNSGPS
TSTAAGGGGSADSKYVYSAASIANIPQKMLRQLIQSGHLQVHAEEDGNQY
VTIPLSSTAANLIKSNKLTASGSGASGSGTPVKNDASADKPLTIKQEFD*

RE17834.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:17:53
Subject Length Description Subject Range Query Range Score Percent Strand
bs-PC 449 CG3411-PC 1..449 1..449 2321 100 Plus
bs-PA 449 CG3411-PA 1..449 1..449 2321 100 Plus
bs-PB 355 CG3411-PB 1..278 1..278 1465 100 Plus
Hr38-PD 836 CG1864-PD 45..430 73..432 162 24.4 Plus
Hr38-PB 1078 CG1864-PB 287..672 73..432 162 24.4 Plus