Clone RE17836 Report

Search the DGRC for RE17836

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:178
Well:36
Vector:pFlc-1
Associated Gene/TranscriptRpS5b-RA
Protein status:RE17836.pep: gold
Preliminary Size:847
Sequenced Size:888

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7014 2001-12-14 Blastp of sequenced clone
CG7014 2002-01-01 Sim4 clustering to Release 2
CG7014 2003-01-01 Sim4 clustering to Release 3
RpS5b 2008-04-29 Release 5.5 accounting
RpS5b 2008-08-15 Release 5.9 accounting
RpS5b 2008-12-18 5.12 accounting

Clone Sequence Records

RE17836.complete Sequence

888 bp (888 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071138

> RE17836.complete
CTTTTTCATCCTCTTTCTTTCCGCGCCGAACGCTTCGCGAAGTCGCACGC
CTTTTGAGATCTAGCTCGAATTAATTTCCCCGAAATGTCCGAGGAAGTGG
TGGAGTCCAGCAGCCAGGAGGCGAGCCAGGTTATACCGCAGGAGCAGGAG
GACTGGGCTGACGATGTCGTTACCACAATGCCGGCCCAGGAGGTCACCGA
GTGGCCGGAAATCAAGCTTTTCGGGCGCTGGGCCTGCGACGACATCTCCA
TCAGCGACATCTCGCTGCAGGACTACATTGCCGTAAAGGAGAAGTTCGCC
CGCTACCTGCCGCACTCCGCCGGACGCTATGCGGCCAAGAGATTCCGCAA
GGCCCAATGCCCCATCGTGGAGCGCCTCACCAGCGGGCTGATGATGAAGG
GGCGCAGCAACGGCAAGAAGCTCCTCGCCTGCCGCATCGTCAAGCACGCC
TTCGAGATCATCCATCTGCTAACCTCGGAGAATCCGCTTCAGGTCACCGT
CAACGCCATCGTCAATTCCGGTCCGCGCGAGGACTCCACGCGAATCGGAC
GCGCCGGCACTGTGCGCCGCCAGGCAGTCGATGTGTCGCCCTTGCGTCGT
GTCAACCAGGCAATTTGGCTAATCTGCACTGGAGCACGTGAGGCTGCCTT
CCGCAACATCAAGACGGTGGCCGAGTGTCTGGCTGATGAGCTGATCAACG
CCGCCAAGGGATCCTCCAACTCCTACGCCATCAAGAAGAAGGACGAGTTG
GAGCGCGTGGCCAAGTCGAATCGTTAAGCTGCGGATTTTCTGCATTTCCA
TGAATTGATGCCGACTTACATAAGTTGCTATGTAATCATTTCATCTTCTA
ACTAAATACACAAATGTATTTTAAAAAAAAAAAAAAAA

RE17836.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:42:58
Subject Length Description Subject Range Query Range Score Percent Strand
RpS5b.c 1588 RpS5b.c 563..1435 1..873 4365 100 Plus
RpS5b.b 906 RpS5b.b 28..641 1..614 3055 99.8 Plus
RpS5b.a 977 RpS5b.a 28..637 1..610 3050 100 Plus
RpS5b.a 977 RpS5b.a 712..977 608..873 1330 100 Plus
RpS5b.b 906 RpS5b.b 643..906 610..873 1320 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:39:25
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 10725595..10726208 614..1 3025 99.5 Minus
chr3R 27901430 chr3R 10725079..10725344 872..607 1330 100 Minus
chrX 22417052 chrX 17036274..17036564 494..204 720 83.2 Minus
chrX 22417052 chrX 17034095..17034196 709..608 300 86.3 Minus
chrX 22417052 chrX 17034493..17034604 610..499 290 83.9 Minus
chrX 22417052 chrX 17033180..17033251 778..707 255 90.3 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:38:56 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:39:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14900948..14901561 614..1 3055 99.8 Minus
3R 32079331 3R 14900431..14900697 873..607 1335 100 Minus
X 23542271 X 17146796..17147086 494..204 720 83.2 Minus
X 23542271 X 17144617..17144718 709..608 300 86.3 Minus
X 23542271 X 17145015..17145126 610..499 290 83.9 Minus
X 23542271 X 17143702..17143773 778..707 255 90.3 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:09:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 14641779..14642392 614..1 3055 99.8 Minus
3R 31820162 3R 14641262..14641528 873..607 1335 100 Minus
X 23527363 X 17154894..17155184 494..204 720 83.1 Minus
X 23527363 X 17152715..17152816 709..608 300 86.2 Minus
X 23527363 X 17153113..17153224 610..499 290 83.9 Minus
X 23527363 X 17151800..17151871 778..707 255 90.2 Minus
Blast to na_te.dros performed on 2019-03-16 12:39:23 has no hits.

RE17836.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:40:31 Download gff for RE17836.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 10725079..10725341 610..872 100 <- Minus
chr3R 10725600..10726208 1..609 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:59:02 Download gff for RE17836.complete
Subject Subject Range Query Range Percent Splice Strand
RpS5b-RA 1..693 85..777 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:08:55 Download gff for RE17836.complete
Subject Subject Range Query Range Percent Splice Strand
RpS5b-RA 1..693 85..777 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 15:06:48 Download gff for RE17836.complete
Subject Subject Range Query Range Percent Splice Strand
RpS5b-RA 1..693 85..777 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:33:11 Download gff for RE17836.complete
Subject Subject Range Query Range Percent Splice Strand
RpS5b-RA 1..693 85..777 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:50:13 Download gff for RE17836.complete
Subject Subject Range Query Range Percent Splice Strand
RpS5b-RA 1..693 85..777 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:38:05 Download gff for RE17836.complete
Subject Subject Range Query Range Percent Splice Strand
RpS5b-RA 28..899 1..872 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:08:54 Download gff for RE17836.complete
Subject Subject Range Query Range Percent Splice Strand
RpS5b-RA 28..899 1..872 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:06:48 Download gff for RE17836.complete
Subject Subject Range Query Range Percent Splice Strand
RpS5b-RA 28..899 1..872 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:33:11 Download gff for RE17836.complete
Subject Subject Range Query Range Percent Splice Strand
RpS5b-RA 28..899 1..872 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:50:13 Download gff for RE17836.complete
Subject Subject Range Query Range Percent Splice Strand
RpS5b-RA 3..874 1..872 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:40:31 Download gff for RE17836.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14900432..14900694 610..872 100 <- Minus
3R 14900953..14901561 1..609 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:40:31 Download gff for RE17836.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14900432..14900694 610..872 100 <- Minus
3R 14900953..14901561 1..609 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:40:31 Download gff for RE17836.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14900432..14900694 610..872 100 <- Minus
3R 14900953..14901561 1..609 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:06:48 Download gff for RE17836.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10726154..10726416 610..872 100 <- Minus
arm_3R 10726675..10727283 1..609 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:10:10 Download gff for RE17836.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14641263..14641525 610..872 100 <- Minus
3R 14641784..14642392 1..609 100   Minus

RE17836.hyp Sequence

Translation from 84 to 776

> RE17836.hyp
MSEEVVESSSQEASQVIPQEQEDWADDVVTTMPAQEVTEWPEIKLFGRWA
CDDISISDISLQDYIAVKEKFARYLPHSAGRYAAKRFRKAQCPIVERLTS
GLMMKGRSNGKKLLACRIVKHAFEIIHLLTSENPLQVTVNAIVNSGPRED
STRIGRAGTVRRQAVDVSPLRRVNQAIWLICTGAREAAFRNIKTVAECLA
DELINAAKGSSNSYAIKKKDELERVAKSNR*

RE17836.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:02:36
Subject Length Description Subject Range Query Range Score Percent Strand
RpS5b-PA 230 CG7014-PA 1..230 1..230 1168 100 Plus
RpS5a-PD 228 CG8922-PD 4..228 1..230 929 79.1 Plus
RpS5a-PC 228 CG8922-PC 4..228 1..230 929 79.1 Plus
RpS5a-PB 228 CG8922-PB 4..228 1..230 929 79.1 Plus
RpS5a-PA 228 CG8922-PA 4..228 1..230 929 79.1 Plus

RE17836.pep Sequence

Translation from 84 to 776

> RE17836.pep
MSEEVVESSSQEASQVIPQEQEDWADDVVTTMPAQEVTEWPEIKLFGRWA
CDDISISDISLQDYIAVKEKFARYLPHSAGRYAAKRFRKAQCPIVERLTS
GLMMKGRSNGKKLLACRIVKHAFEIIHLLTSENPLQVTVNAIVNSGPRED
STRIGRAGTVRRQAVDVSPLRRVNQAIWLICTGAREAAFRNIKTVAECLA
DELINAAKGSSNSYAIKKKDELERVAKSNR*

RE17836.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:06:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17170-PA 230 GF17170-PA 1..230 1..230 1101 90.9 Plus
Dana\GF22379-PA 227 GF22379-PA 3..227 4..230 971 79.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:06:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20979-PA 230 GG20979-PA 1..230 1..230 1169 95.2 Plus
Dere\GG18202-PA 228 GG18202-PA 4..228 1..230 973 80 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:06:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19518-PA 242 GH19518-PA 19..242 17..230 993 84.8 Plus
Dgri\GH24635-PA 228 GH24635-PA 3..228 4..230 971 80.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:15:51
Subject Length Description Subject Range Query Range Score Percent Strand
RpS5b-PA 230 CG7014-PA 1..230 1..230 1168 100 Plus
RpS5a-PD 228 CG8922-PD 4..228 1..230 929 79.1 Plus
RpS5a-PC 228 CG8922-PC 4..228 1..230 929 79.1 Plus
RpS5a-PB 228 CG8922-PB 4..228 1..230 929 79.1 Plus
RpS5a-PA 228 CG8922-PA 4..228 1..230 929 79.1 Plus
RpS5b-PB 180 CG7014-PB 1..175 1..175 893 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:06:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22995-PA 242 GI22995-PA 30..242 18..230 1001 86.4 Plus
Dmoj\GI15824-PA 227 GI15824-PA 4..227 1..230 970 80.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:06:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21699-PA 234 GL21699-PA 1..234 1..230 1044 87.2 Plus
Dper\GL20334-PA 228 GL20334-PA 36..228 38..230 966 90.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:06:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20032-PA 234 GA20032-PA 1..234 1..230 1044 87.2 Plus
Dpse\GA28883-PA 228 GA28883-PA 36..228 38..230 966 90.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:06:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25815-PA 230 GM25815-PA 1..230 1..230 1168 95.2 Plus
Dsec\GM13336-PA 228 GM13336-PA 4..228 1..230 973 80 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:06:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20391-PA 230 GD20391-PA 1..230 1..230 1172 95.2 Plus
Dsim\GD15697-PA 147 GD15697-PA 52..147 135..230 465 91.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:06:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24693-PA 241 GJ24693-PA 48..241 37..230 1002 95.9 Plus
Dvir\GJ18677-PA 227 GJ18677-PA 3..227 4..230 966 79.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:06:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20078-PA 230 GK20078-PA 4..230 1..230 972 80 Plus
Dwil\GK18566-PA 230 GK18566-PA 4..230 1..230 972 80 Plus
Dwil\GK21212-PA 230 GK21212-PA 13..230 11..230 956 80.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:06:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26420-PA 229 GE26420-PA 1..229 1..230 1155 95.7 Plus
Dyak\GE15619-PA 228 GE15619-PA 4..228 1..230 973 80 Plus