BDGP Sequence Production Resources |
Search the DGRC for RE17836
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 178 |
Well: | 36 |
Vector: | pFlc-1 |
Associated Gene/Transcript | RpS5b-RA |
Protein status: | RE17836.pep: gold |
Preliminary Size: | 847 |
Sequenced Size: | 888 |
Gene | Date | Evidence |
---|---|---|
CG7014 | 2001-12-14 | Blastp of sequenced clone |
CG7014 | 2002-01-01 | Sim4 clustering to Release 2 |
CG7014 | 2003-01-01 | Sim4 clustering to Release 3 |
RpS5b | 2008-04-29 | Release 5.5 accounting |
RpS5b | 2008-08-15 | Release 5.9 accounting |
RpS5b | 2008-12-18 | 5.12 accounting |
888 bp (888 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071138
> RE17836.complete CTTTTTCATCCTCTTTCTTTCCGCGCCGAACGCTTCGCGAAGTCGCACGC CTTTTGAGATCTAGCTCGAATTAATTTCCCCGAAATGTCCGAGGAAGTGG TGGAGTCCAGCAGCCAGGAGGCGAGCCAGGTTATACCGCAGGAGCAGGAG GACTGGGCTGACGATGTCGTTACCACAATGCCGGCCCAGGAGGTCACCGA GTGGCCGGAAATCAAGCTTTTCGGGCGCTGGGCCTGCGACGACATCTCCA TCAGCGACATCTCGCTGCAGGACTACATTGCCGTAAAGGAGAAGTTCGCC CGCTACCTGCCGCACTCCGCCGGACGCTATGCGGCCAAGAGATTCCGCAA GGCCCAATGCCCCATCGTGGAGCGCCTCACCAGCGGGCTGATGATGAAGG GGCGCAGCAACGGCAAGAAGCTCCTCGCCTGCCGCATCGTCAAGCACGCC TTCGAGATCATCCATCTGCTAACCTCGGAGAATCCGCTTCAGGTCACCGT CAACGCCATCGTCAATTCCGGTCCGCGCGAGGACTCCACGCGAATCGGAC GCGCCGGCACTGTGCGCCGCCAGGCAGTCGATGTGTCGCCCTTGCGTCGT GTCAACCAGGCAATTTGGCTAATCTGCACTGGAGCACGTGAGGCTGCCTT CCGCAACATCAAGACGGTGGCCGAGTGTCTGGCTGATGAGCTGATCAACG CCGCCAAGGGATCCTCCAACTCCTACGCCATCAAGAAGAAGGACGAGTTG GAGCGCGTGGCCAAGTCGAATCGTTAAGCTGCGGATTTTCTGCATTTCCA TGAATTGATGCCGACTTACATAAGTTGCTATGTAATCATTTCATCTTCTA ACTAAATACACAAATGTATTTTAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
RpS5b.c | 1588 | RpS5b.c | 563..1435 | 1..873 | 4365 | 100 | Plus |
RpS5b.b | 906 | RpS5b.b | 28..641 | 1..614 | 3055 | 99.8 | Plus |
RpS5b.a | 977 | RpS5b.a | 28..637 | 1..610 | 3050 | 100 | Plus |
RpS5b.a | 977 | RpS5b.a | 712..977 | 608..873 | 1330 | 100 | Plus |
RpS5b.b | 906 | RpS5b.b | 643..906 | 610..873 | 1320 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 10725595..10726208 | 614..1 | 3025 | 99.5 | Minus |
chr3R | 27901430 | chr3R | 10725079..10725344 | 872..607 | 1330 | 100 | Minus |
chrX | 22417052 | chrX | 17036274..17036564 | 494..204 | 720 | 83.2 | Minus |
chrX | 22417052 | chrX | 17034095..17034196 | 709..608 | 300 | 86.3 | Minus |
chrX | 22417052 | chrX | 17034493..17034604 | 610..499 | 290 | 83.9 | Minus |
chrX | 22417052 | chrX | 17033180..17033251 | 778..707 | 255 | 90.3 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 14900948..14901561 | 614..1 | 3055 | 99.8 | Minus |
3R | 32079331 | 3R | 14900431..14900697 | 873..607 | 1335 | 100 | Minus |
X | 23542271 | X | 17146796..17147086 | 494..204 | 720 | 83.2 | Minus |
X | 23542271 | X | 17144617..17144718 | 709..608 | 300 | 86.3 | Minus |
X | 23542271 | X | 17145015..17145126 | 610..499 | 290 | 83.9 | Minus |
X | 23542271 | X | 17143702..17143773 | 778..707 | 255 | 90.3 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 14641779..14642392 | 614..1 | 3055 | 99.8 | Minus |
3R | 31820162 | 3R | 14641262..14641528 | 873..607 | 1335 | 100 | Minus |
X | 23527363 | X | 17154894..17155184 | 494..204 | 720 | 83.1 | Minus |
X | 23527363 | X | 17152715..17152816 | 709..608 | 300 | 86.2 | Minus |
X | 23527363 | X | 17153113..17153224 | 610..499 | 290 | 83.9 | Minus |
X | 23527363 | X | 17151800..17151871 | 778..707 | 255 | 90.2 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 10725079..10725341 | 610..872 | 100 | <- | Minus |
chr3R | 10725600..10726208 | 1..609 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpS5b-RA | 1..693 | 85..777 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpS5b-RA | 1..693 | 85..777 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpS5b-RA | 1..693 | 85..777 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpS5b-RA | 1..693 | 85..777 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpS5b-RA | 1..693 | 85..777 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpS5b-RA | 28..899 | 1..872 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpS5b-RA | 28..899 | 1..872 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpS5b-RA | 28..899 | 1..872 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpS5b-RA | 28..899 | 1..872 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpS5b-RA | 3..874 | 1..872 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 14900432..14900694 | 610..872 | 100 | <- | Minus |
3R | 14900953..14901561 | 1..609 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 14900432..14900694 | 610..872 | 100 | <- | Minus |
3R | 14900953..14901561 | 1..609 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 14900432..14900694 | 610..872 | 100 | <- | Minus |
3R | 14900953..14901561 | 1..609 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 10726154..10726416 | 610..872 | 100 | <- | Minus |
arm_3R | 10726675..10727283 | 1..609 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 14641263..14641525 | 610..872 | 100 | <- | Minus |
3R | 14641784..14642392 | 1..609 | 100 | Minus |
Translation from 84 to 776
> RE17836.hyp MSEEVVESSSQEASQVIPQEQEDWADDVVTTMPAQEVTEWPEIKLFGRWA CDDISISDISLQDYIAVKEKFARYLPHSAGRYAAKRFRKAQCPIVERLTS GLMMKGRSNGKKLLACRIVKHAFEIIHLLTSENPLQVTVNAIVNSGPRED STRIGRAGTVRRQAVDVSPLRRVNQAIWLICTGAREAAFRNIKTVAECLA DELINAAKGSSNSYAIKKKDELERVAKSNR*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
RpS5b-PA | 230 | CG7014-PA | 1..230 | 1..230 | 1168 | 100 | Plus |
RpS5a-PD | 228 | CG8922-PD | 4..228 | 1..230 | 929 | 79.1 | Plus |
RpS5a-PC | 228 | CG8922-PC | 4..228 | 1..230 | 929 | 79.1 | Plus |
RpS5a-PB | 228 | CG8922-PB | 4..228 | 1..230 | 929 | 79.1 | Plus |
RpS5a-PA | 228 | CG8922-PA | 4..228 | 1..230 | 929 | 79.1 | Plus |
Translation from 84 to 776
> RE17836.pep MSEEVVESSSQEASQVIPQEQEDWADDVVTTMPAQEVTEWPEIKLFGRWA CDDISISDISLQDYIAVKEKFARYLPHSAGRYAAKRFRKAQCPIVERLTS GLMMKGRSNGKKLLACRIVKHAFEIIHLLTSENPLQVTVNAIVNSGPRED STRIGRAGTVRRQAVDVSPLRRVNQAIWLICTGAREAAFRNIKTVAECLA DELINAAKGSSNSYAIKKKDELERVAKSNR*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF17170-PA | 230 | GF17170-PA | 1..230 | 1..230 | 1101 | 90.9 | Plus |
Dana\GF22379-PA | 227 | GF22379-PA | 3..227 | 4..230 | 971 | 79.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG20979-PA | 230 | GG20979-PA | 1..230 | 1..230 | 1169 | 95.2 | Plus |
Dere\GG18202-PA | 228 | GG18202-PA | 4..228 | 1..230 | 973 | 80 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH19518-PA | 242 | GH19518-PA | 19..242 | 17..230 | 993 | 84.8 | Plus |
Dgri\GH24635-PA | 228 | GH24635-PA | 3..228 | 4..230 | 971 | 80.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
RpS5b-PA | 230 | CG7014-PA | 1..230 | 1..230 | 1168 | 100 | Plus |
RpS5a-PD | 228 | CG8922-PD | 4..228 | 1..230 | 929 | 79.1 | Plus |
RpS5a-PC | 228 | CG8922-PC | 4..228 | 1..230 | 929 | 79.1 | Plus |
RpS5a-PB | 228 | CG8922-PB | 4..228 | 1..230 | 929 | 79.1 | Plus |
RpS5a-PA | 228 | CG8922-PA | 4..228 | 1..230 | 929 | 79.1 | Plus |
RpS5b-PB | 180 | CG7014-PB | 1..175 | 1..175 | 893 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI22995-PA | 242 | GI22995-PA | 30..242 | 18..230 | 1001 | 86.4 | Plus |
Dmoj\GI15824-PA | 227 | GI15824-PA | 4..227 | 1..230 | 970 | 80.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21699-PA | 234 | GL21699-PA | 1..234 | 1..230 | 1044 | 87.2 | Plus |
Dper\GL20334-PA | 228 | GL20334-PA | 36..228 | 38..230 | 966 | 90.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA20032-PA | 234 | GA20032-PA | 1..234 | 1..230 | 1044 | 87.2 | Plus |
Dpse\GA28883-PA | 228 | GA28883-PA | 36..228 | 38..230 | 966 | 90.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM25815-PA | 230 | GM25815-PA | 1..230 | 1..230 | 1168 | 95.2 | Plus |
Dsec\GM13336-PA | 228 | GM13336-PA | 4..228 | 1..230 | 973 | 80 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20391-PA | 230 | GD20391-PA | 1..230 | 1..230 | 1172 | 95.2 | Plus |
Dsim\GD15697-PA | 147 | GD15697-PA | 52..147 | 135..230 | 465 | 91.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ24693-PA | 241 | GJ24693-PA | 48..241 | 37..230 | 1002 | 95.9 | Plus |
Dvir\GJ18677-PA | 227 | GJ18677-PA | 3..227 | 4..230 | 966 | 79.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK20078-PA | 230 | GK20078-PA | 4..230 | 1..230 | 972 | 80 | Plus |
Dwil\GK18566-PA | 230 | GK18566-PA | 4..230 | 1..230 | 972 | 80 | Plus |
Dwil\GK21212-PA | 230 | GK21212-PA | 13..230 | 11..230 | 956 | 80.9 | Plus |