BDGP Sequence Production Resources |
Search the DGRC for RE17884
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 178 |
Well: | 84 |
Vector: | pFlc-1 |
Associated Gene/Transcript | TfAP-2-RB |
Protein status: | RE17884.pep: gold |
Preliminary Size: | 1998 |
Sequenced Size: | 2234 |
Gene | Date | Evidence |
---|---|---|
CG7807 | 2001-12-14 | Blastp of sequenced clone |
CG7807 | 2002-01-01 | Sim4 clustering to Release 2 |
CG7807 | 2003-01-01 | Sim4 clustering to Release 3 |
AP-2 | 2008-04-29 | Release 5.5 accounting |
AP-2 | 2008-08-15 | Release 5.9 accounting |
AP-2 | 2008-12-18 | 5.12 accounting |
2234 bp (2234 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071140
> RE17884.complete AGTCAAGAACTACGTCTGGTGGCTGCGCAAAGGCGGAATTTCGATTGCGG GTCCTCGCTTAATTAACCAAACCAAACCAAACCGAACCGTACCGAACCAA AACCGTACCGAAACCGCTCCGTTCCGTTCCGAACCGATCCGCACCTAGCC GAACCGAAACGATCGTGGATCCGAACTGCAAATTAGTTCAAATACAATTA AATCACGTCTATTGTCCTTCAATCGGGGAGAGTGCAGTGTATATAGCGGC GGATACGGAACTCTAGCTCCAGCACCCACAGTTGCCTTAACCAGTGCCAA AAATCGATTTTCAATAAATACTTATTTAGTGATCGTACCTGTTTTGCATT GGCCCTGGCCCAAGTGTTCAAAAGAAAACCTATGCTCTCCAACTAGTTGA TATCGCCGTCTAATTTGGATCAACATGCACATTCTACACCGCACCAACGA CCATCAGTTCGAGGATCAGAAGTTCATGATGGAACGCCTCAGTGGACATG GGAGTCTAGGGCTGTCCAGCGGCAGTGCGGCGTACACAACGCATTCCGGC GGCCACACGGGACGCAGCGGACCGGCCACGGGGCACAGTGGGCACAGCAG CACCCATGGATCGGCGGCCACCATGCACCACCAGTCGCTGCAGTCCGACT TCCAGCCGCCGTACTTCCCGCCCCCCTTCCACCACTCCACCCAGAGTCCT CCCCAGCAACAGAACCATGGAGCCCTCGAGTACTTGGGCACGGATCCGTA TGGCCAGCCCCTCTCCTCGCTTCACCACGCCCCACTGCACCACTACAACC AGCTGGCGGGACTGAGATCCACGCAGGACCAACTGGGGATCCACAGGACC CACAGAGAGGCTGAGCTGCAGGGACATGTCACCCAATTGTCACATGGATT TCCGTACACGGATAGGAGGAGCGATTACGGCAGTGCAATATCCGCGGGAG CTGCCCACGGAACGAGACTTGGCCACGAGCACGAGTCCCTGGCGCTGCAC CAAGCCCTTCAAAACGCCGTCGATGATGTCCAAGCTCCTGCCCTCGACGA CAATGTGGCGTTCATGTCAGACTTGCCGCTCATAAAGAGCATGAAAAGCG GAAAAGAAGCCGGGAACATTGGATCGGGTTCGCCCAGCGAGGTATTCTGT GCAGTTCCTGGTCGCCTCAGTCTCCTATCGAGCACCTCGAAATACAAGGT CACCATAGCCGAAGTACAGCGTCGACTCTCGCCGCCCGAGTGCTTGAACG CCTCCCTGCTGGGCGGAGTGCTCCGAAGGGCTAAGAGCAAGAACGGAGGT CGCCTGTTGAGGGAGAAGCTGGAAAAGATCGGCCTCAATCTACCCGCCGG TAGACGGAAAGCGGCCAACGTCACCCTACTGACATCCTTGGTTGAGGGGG AGGCAACGCACCTGGCCAAGGACTTTCACTTCGTTTGCGAAACCGAATTC CCCGCCAGGCAGCTGGCCGAGTACATCGTGCGCCACCAAACGGAGCCGCA GGACTCGTACCGTCGAAAAGAGCTCATTCTCCACTCCCAGCAGATAACAA AAGAGCTTATGCAGATCCTGAGCCAAGATCGAACGACCCACTTTGGGACG AGATCACAGCATCTGCTGGAACCATCGATGCAGCGCCACTTGACGCACTT CTCCCTGATAACGCACGGATTCGGATCGCCCGCGATTATGGCTGTTCTGC ACGCTTTTCAGACATTTTTAAACGAGTCATTAAACTACTTGGAAAAGCTG TACCCTTCGAACGGCGGAGGGATGGTGTCGTCGTCGTTGGACAAAAGTAA AATTGACAACGAAAAGAAATGATAGGCTATGTTGTATATTGCCACAGATT GAAGCAAGCCGTACTTTAAGATTAACTTTCCATACACTAGGCACAACATT AATAAAAATTATAAAATTCCTGTAAATTAATTTATTTAGTTAAGTGTAAA TTATTGGACATTTTGTATATCTATAACTGTAATTTGAATGTACAATATTC AAATATATTAAATACGTATAATTTATTTAACTTAGAAAAATACATCGACA TTTTGTGAAAAGCACAAAGCTTTTTACAACTAATTCAAACAAAATCTTTA CAAATACACTTATTTGTATGTAGAAACGATTGAAATGCTCTCATTTTTAA TTTTTTAAGTAACTTACAATTTAAAGATTTTAAAATTATACAAATGAATA AAATGTGTTTTTAAAACCAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
AP-2-RB | 2240 | AP-2-RB | 20..2240 | 1..2221 | 11075 | 99.9 | Plus |
AP-2.a | 2239 | AP-2.a | 728..2239 | 710..2221 | 7545 | 99.9 | Plus |
AP-2.d | 2016 | AP-2.d | 505..2016 | 710..2221 | 7545 | 99.9 | Plus |
AP-2.a | 2239 | AP-2.a | 1..713 | 1..713 | 3550 | 99.8 | Plus |
AP-2.d | 2016 | AP-2.d | 258..490 | 481..713 | 1165 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 21601777..21602285 | 1709..2217 | 2545 | 100 | Plus |
chr3L | 24539361 | chr3L | 21587794..21588275 | 1..482 | 2395 | 99.8 | Plus |
chr3L | 24539361 | chr3L | 21601179..21601445 | 1277..1543 | 1335 | 100 | Plus |
chr3L | 24539361 | chr3L | 21598354..21598585 | 481..712 | 1160 | 100 | Plus |
chr3L | 24539361 | chr3L | 21600079..21600287 | 881..1089 | 1045 | 100 | Plus |
chr3L | 24539361 | chr3L | 21600931..21601121 | 1089..1279 | 955 | 100 | Plus |
chr3L | 24539361 | chr3L | 21598652..21598822 | 710..880 | 855 | 100 | Plus |
chr3L | 24539361 | chr3L | 21601546..21601716 | 1541..1711 | 855 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 21612841..21613353 | 1709..2221 | 2550 | 99.8 | Plus |
3L | 28110227 | 3L | 21598858..21599339 | 1..482 | 2395 | 99.8 | Plus |
3L | 28110227 | 3L | 21612243..21612509 | 1277..1543 | 1335 | 100 | Plus |
3L | 28110227 | 3L | 21609418..21609649 | 481..712 | 1160 | 100 | Plus |
3L | 28110227 | 3L | 21611143..21611351 | 881..1089 | 1045 | 100 | Plus |
3L | 28110227 | 3L | 21611995..21612185 | 1089..1279 | 955 | 100 | Plus |
3L | 28110227 | 3L | 21609716..21609886 | 710..880 | 855 | 100 | Plus |
3L | 28110227 | 3L | 21612610..21612780 | 1541..1711 | 855 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 21605941..21606453 | 1709..2221 | 2550 | 99.8 | Plus |
3L | 28103327 | 3L | 21591958..21592439 | 1..482 | 2395 | 99.7 | Plus |
3L | 28103327 | 3L | 21605343..21605609 | 1277..1543 | 1335 | 100 | Plus |
3L | 28103327 | 3L | 21602518..21602749 | 481..712 | 1160 | 100 | Plus |
3L | 28103327 | 3L | 21604243..21604451 | 881..1089 | 1045 | 100 | Plus |
3L | 28103327 | 3L | 21605095..21605285 | 1089..1279 | 955 | 100 | Plus |
3L | 28103327 | 3L | 21605710..21605880 | 1541..1711 | 855 | 100 | Plus |
3L | 28103327 | 3L | 21602816..21602986 | 710..880 | 855 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
transib1 | 2167 | transib1 TRANSIB1 2167bp | 1595..1658 | 2032..1970 | 128 | 68.8 | Minus |
Quasimodo | 7387 | Quasimodo QUASIMODO 7387bp Derived from P1 clones DS08479 & DS07153 by Sue Celniker, 29 March 2001. | 1782..1885 | 1991..2094 | 124 | 60.4 | Plus |
Idefix | 7411 | Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). | 4368..4523 | 1889..2043 | 121 | 56 | Plus |
accord2 | 7650 | accord2 QBERT 7650bp | 68..139 | 1978..2050 | 119 | 64.4 | Plus |
1360 | 3409 | 1360 1360 3409bp | 2672..3052 | 1802..2187 | 119 | 54.8 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 21587956..21588274 | 163..481 | 100 | -> | Plus |
chr3L | 21598355..21598585 | 482..712 | 100 | -> | Plus |
chr3L | 21598655..21598822 | 713..880 | 100 | -> | Plus |
chr3L | 21600079..21600286 | 881..1088 | 100 | -> | Plus |
chr3L | 21600931..21601120 | 1089..1278 | 100 | -> | Plus |
chr3L | 21601181..21601445 | 1279..1543 | 100 | -> | Plus |
chr3L | 21601549..21601716 | 1544..1711 | 100 | -> | Plus |
chr3L | 21601780..21602285 | 1712..2218 | 95 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
AP-2-RB | 1..1398 | 425..1822 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
AP-2-RB | 1..1398 | 425..1822 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TfAP-2-RB | 1..1398 | 425..1822 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
AP-2-RB | 1..1398 | 425..1822 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TfAP-2-RB | 1..1398 | 425..1822 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
AP-2-RB | 1..2217 | 1..2218 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
AP-2-RB | 1..2217 | 1..2218 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TfAP-2-RB | 3..2219 | 1..2217 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
AP-2-RB | 1..2217 | 1..2218 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TfAP-2-RB | 3..2219 | 1..2217 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 21598858..21599338 | 1..481 | 99 | -> | Plus |
3L | 21609419..21609649 | 482..712 | 100 | -> | Plus |
3L | 21609719..21609886 | 713..880 | 100 | -> | Plus |
3L | 21611143..21611350 | 881..1088 | 100 | -> | Plus |
3L | 21611995..21612184 | 1089..1278 | 100 | -> | Plus |
3L | 21612245..21612509 | 1279..1543 | 100 | -> | Plus |
3L | 21612613..21612780 | 1544..1711 | 100 | -> | Plus |
3L | 21612844..21613349 | 1712..2218 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 21598858..21599338 | 1..481 | 99 | -> | Plus |
3L | 21609419..21609649 | 482..712 | 100 | -> | Plus |
3L | 21609719..21609886 | 713..880 | 100 | -> | Plus |
3L | 21611143..21611350 | 881..1088 | 100 | -> | Plus |
3L | 21611995..21612184 | 1089..1278 | 100 | -> | Plus |
3L | 21612245..21612509 | 1279..1543 | 100 | -> | Plus |
3L | 21612613..21612780 | 1544..1711 | 100 | -> | Plus |
3L | 21612844..21613349 | 1712..2218 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 21598858..21599338 | 1..481 | 99 | -> | Plus |
3L | 21609419..21609649 | 482..712 | 100 | -> | Plus |
3L | 21609719..21609886 | 713..880 | 100 | -> | Plus |
3L | 21611143..21611350 | 881..1088 | 100 | -> | Plus |
3L | 21611995..21612184 | 1089..1278 | 100 | -> | Plus |
3L | 21612245..21612509 | 1279..1543 | 100 | -> | Plus |
3L | 21612613..21612780 | 1544..1711 | 100 | -> | Plus |
3L | 21612844..21613349 | 1712..2218 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 21591958..21592438 | 1..481 | 99 | -> | Plus |
arm_3L | 21602519..21602749 | 482..712 | 100 | -> | Plus |
arm_3L | 21602819..21602986 | 713..880 | 100 | -> | Plus |
arm_3L | 21604243..21604450 | 881..1088 | 100 | -> | Plus |
arm_3L | 21605095..21605284 | 1089..1278 | 100 | -> | Plus |
arm_3L | 21605345..21605609 | 1279..1543 | 100 | -> | Plus |
arm_3L | 21605713..21605880 | 1544..1711 | 100 | -> | Plus |
arm_3L | 21605944..21606449 | 1712..2218 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 21591958..21592438 | 1..481 | 99 | -> | Plus |
3L | 21602519..21602749 | 482..712 | 100 | -> | Plus |
3L | 21602819..21602986 | 713..880 | 100 | -> | Plus |
3L | 21604243..21604450 | 881..1088 | 100 | -> | Plus |
3L | 21605095..21605284 | 1089..1278 | 100 | -> | Plus |
3L | 21605345..21605609 | 1279..1543 | 100 | -> | Plus |
3L | 21605713..21605880 | 1544..1711 | 100 | -> | Plus |
3L | 21605944..21606449 | 1712..2218 | 99 | Plus |
Translation from 424 to 1821
> RE17884.hyp MHILHRTNDHQFEDQKFMMERLSGHGSLGLSSGSAAYTTHSGGHTGRSGP ATGHSGHSSTHGSAATMHHQSLQSDFQPPYFPPPFHHSTQSPPQQQNHGA LEYLGTDPYGQPLSSLHHAPLHHYNQLAGLRSTQDQLGIHRTHREAELQG HVTQLSHGFPYTDRRSDYGSAISAGAAHGTRLGHEHESLALHQALQNAVD DVQAPALDDNVAFMSDLPLIKSMKSGKEAGNIGSGSPSEVFCAVPGRLSL LSSTSKYKVTIAEVQRRLSPPECLNASLLGGVLRRAKSKNGGRLLREKLE KIGLNLPAGRRKAANVTLLTSLVEGEATHLAKDFHFVCETEFPARQLAEY IVRHQTEPQDSYRRKELILHSQQITKELMQILSQDRTTHFGTRSQHLLEP SMQRHLTHFSLITHGFGSPAIMAVLHAFQTFLNESLNYLEKLYPSNGGGM VSSSLDKSKIDNEKK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
TfAP-2-PB | 465 | CG7807-PB | 1..465 | 1..465 | 2437 | 100 | Plus |
TfAP-2-PD | 471 | CG7807-PD | 1..471 | 1..465 | 2420 | 98.7 | Plus |
TfAP-2-PC | 459 | CG7807-PC | 8..459 | 14..465 | 2332 | 98.9 | Plus |
TfAP-2-PA | 461 | CG7807-PA | 14..461 | 18..465 | 2331 | 99.6 | Plus |
TfAP-2-PF | 465 | CG7807-PF | 8..465 | 14..465 | 2315 | 97.6 | Plus |
Translation from 424 to 1821
> RE17884.pep MHILHRTNDHQFEDQKFMMERLSGHGSLGLSSGSAAYTTHSGGHTGRSGP ATGHSGHSSTHGSAATMHHQSLQSDFQPPYFPPPFHHSTQSPPQQQNHGA LEYLGTDPYGQPLSSLHHAPLHHYNQLAGLRSTQDQLGIHRTHREAELQG HVTQLSHGFPYTDRRSDYGSAISAGAAHGTRLGHEHESLALHQALQNAVD DVQAPALDDNVAFMSDLPLIKSMKSGKEAGNIGSGSPSEVFCAVPGRLSL LSSTSKYKVTIAEVQRRLSPPECLNASLLGGVLRRAKSKNGGRLLREKLE KIGLNLPAGRRKAANVTLLTSLVEGEATHLAKDFHFVCETEFPARQLAEY IVRHQTEPQDSYRRKELILHSQQITKELMQILSQDRTTHFGTRSQHLLEP SMQRHLTHFSLITHGFGSPAIMAVLHAFQTFLNESLNYLEKLYPSNGGGM VSSSLDKSKIDNEKK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF23730-PA | 459 | GF23730-PA | 14..459 | 18..465 | 2306 | 98.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG16206-PA | 461 | GG16206-PA | 14..461 | 18..465 | 2342 | 99.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH14383-PA | 460 | GH14383-PA | 32..460 | 36..465 | 2046 | 95.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
TfAP-2-PB | 465 | CG7807-PB | 1..465 | 1..465 | 2437 | 100 | Plus |
TfAP-2-PD | 471 | CG7807-PD | 1..471 | 1..465 | 2420 | 98.7 | Plus |
TfAP-2-PC | 459 | CG7807-PC | 8..459 | 14..465 | 2332 | 98.9 | Plus |
TfAP-2-PA | 461 | CG7807-PA | 14..461 | 18..465 | 2331 | 99.6 | Plus |
TfAP-2-PF | 465 | CG7807-PF | 8..465 | 14..465 | 2315 | 97.6 | Plus |
TfAP-2-PE | 467 | CG7807-PE | 14..467 | 18..465 | 2314 | 98.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI11327-PA | 459 | GI11327-PA | 32..459 | 36..465 | 2104 | 96.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL18109-PA | 252 | GL18109-PA | 1..252 | 214..465 | 1317 | 98.8 | Plus |
Dper\GL20666-PA | 138 | GL20666-PA | 16..133 | 35..152 | 430 | 86.4 | Plus |
Dper\GL18107-PA | 67 | GL18107-PA | 2..32 | 141..171 | 149 | 83.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA28469-PA | 460 | GA28469-PA | 13..460 | 18..465 | 2298 | 96.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM22388-PA | 461 | GM22388-PA | 14..461 | 18..465 | 2348 | 99.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD14977-PA | 461 | GD14977-PA | 14..461 | 18..465 | 2339 | 99.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ11582-PA | 460 | GJ11582-PA | 32..460 | 36..465 | 2064 | 96.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK18142-PA | 458 | GK18142-PA | 32..458 | 36..465 | 2119 | 96.7 | Plus |