Clone RE17884 Report

Search the DGRC for RE17884

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:178
Well:84
Vector:pFlc-1
Associated Gene/TranscriptTfAP-2-RB
Protein status:RE17884.pep: gold
Preliminary Size:1998
Sequenced Size:2234

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7807 2001-12-14 Blastp of sequenced clone
CG7807 2002-01-01 Sim4 clustering to Release 2
CG7807 2003-01-01 Sim4 clustering to Release 3
AP-2 2008-04-29 Release 5.5 accounting
AP-2 2008-08-15 Release 5.9 accounting
AP-2 2008-12-18 5.12 accounting

Clone Sequence Records

RE17884.complete Sequence

2234 bp (2234 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071140

> RE17884.complete
AGTCAAGAACTACGTCTGGTGGCTGCGCAAAGGCGGAATTTCGATTGCGG
GTCCTCGCTTAATTAACCAAACCAAACCAAACCGAACCGTACCGAACCAA
AACCGTACCGAAACCGCTCCGTTCCGTTCCGAACCGATCCGCACCTAGCC
GAACCGAAACGATCGTGGATCCGAACTGCAAATTAGTTCAAATACAATTA
AATCACGTCTATTGTCCTTCAATCGGGGAGAGTGCAGTGTATATAGCGGC
GGATACGGAACTCTAGCTCCAGCACCCACAGTTGCCTTAACCAGTGCCAA
AAATCGATTTTCAATAAATACTTATTTAGTGATCGTACCTGTTTTGCATT
GGCCCTGGCCCAAGTGTTCAAAAGAAAACCTATGCTCTCCAACTAGTTGA
TATCGCCGTCTAATTTGGATCAACATGCACATTCTACACCGCACCAACGA
CCATCAGTTCGAGGATCAGAAGTTCATGATGGAACGCCTCAGTGGACATG
GGAGTCTAGGGCTGTCCAGCGGCAGTGCGGCGTACACAACGCATTCCGGC
GGCCACACGGGACGCAGCGGACCGGCCACGGGGCACAGTGGGCACAGCAG
CACCCATGGATCGGCGGCCACCATGCACCACCAGTCGCTGCAGTCCGACT
TCCAGCCGCCGTACTTCCCGCCCCCCTTCCACCACTCCACCCAGAGTCCT
CCCCAGCAACAGAACCATGGAGCCCTCGAGTACTTGGGCACGGATCCGTA
TGGCCAGCCCCTCTCCTCGCTTCACCACGCCCCACTGCACCACTACAACC
AGCTGGCGGGACTGAGATCCACGCAGGACCAACTGGGGATCCACAGGACC
CACAGAGAGGCTGAGCTGCAGGGACATGTCACCCAATTGTCACATGGATT
TCCGTACACGGATAGGAGGAGCGATTACGGCAGTGCAATATCCGCGGGAG
CTGCCCACGGAACGAGACTTGGCCACGAGCACGAGTCCCTGGCGCTGCAC
CAAGCCCTTCAAAACGCCGTCGATGATGTCCAAGCTCCTGCCCTCGACGA
CAATGTGGCGTTCATGTCAGACTTGCCGCTCATAAAGAGCATGAAAAGCG
GAAAAGAAGCCGGGAACATTGGATCGGGTTCGCCCAGCGAGGTATTCTGT
GCAGTTCCTGGTCGCCTCAGTCTCCTATCGAGCACCTCGAAATACAAGGT
CACCATAGCCGAAGTACAGCGTCGACTCTCGCCGCCCGAGTGCTTGAACG
CCTCCCTGCTGGGCGGAGTGCTCCGAAGGGCTAAGAGCAAGAACGGAGGT
CGCCTGTTGAGGGAGAAGCTGGAAAAGATCGGCCTCAATCTACCCGCCGG
TAGACGGAAAGCGGCCAACGTCACCCTACTGACATCCTTGGTTGAGGGGG
AGGCAACGCACCTGGCCAAGGACTTTCACTTCGTTTGCGAAACCGAATTC
CCCGCCAGGCAGCTGGCCGAGTACATCGTGCGCCACCAAACGGAGCCGCA
GGACTCGTACCGTCGAAAAGAGCTCATTCTCCACTCCCAGCAGATAACAA
AAGAGCTTATGCAGATCCTGAGCCAAGATCGAACGACCCACTTTGGGACG
AGATCACAGCATCTGCTGGAACCATCGATGCAGCGCCACTTGACGCACTT
CTCCCTGATAACGCACGGATTCGGATCGCCCGCGATTATGGCTGTTCTGC
ACGCTTTTCAGACATTTTTAAACGAGTCATTAAACTACTTGGAAAAGCTG
TACCCTTCGAACGGCGGAGGGATGGTGTCGTCGTCGTTGGACAAAAGTAA
AATTGACAACGAAAAGAAATGATAGGCTATGTTGTATATTGCCACAGATT
GAAGCAAGCCGTACTTTAAGATTAACTTTCCATACACTAGGCACAACATT
AATAAAAATTATAAAATTCCTGTAAATTAATTTATTTAGTTAAGTGTAAA
TTATTGGACATTTTGTATATCTATAACTGTAATTTGAATGTACAATATTC
AAATATATTAAATACGTATAATTTATTTAACTTAGAAAAATACATCGACA
TTTTGTGAAAAGCACAAAGCTTTTTACAACTAATTCAAACAAAATCTTTA
CAAATACACTTATTTGTATGTAGAAACGATTGAAATGCTCTCATTTTTAA
TTTTTTAAGTAACTTACAATTTAAAGATTTTAAAATTATACAAATGAATA
AAATGTGTTTTTAAAACCAAAAAAAAAAAAAAAA

RE17884.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:46:43
Subject Length Description Subject Range Query Range Score Percent Strand
AP-2-RB 2240 AP-2-RB 20..2240 1..2221 11075 99.9 Plus
AP-2.a 2239 AP-2.a 728..2239 710..2221 7545 99.9 Plus
AP-2.d 2016 AP-2.d 505..2016 710..2221 7545 99.9 Plus
AP-2.a 2239 AP-2.a 1..713 1..713 3550 99.8 Plus
AP-2.d 2016 AP-2.d 258..490 481..713 1165 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:40:00
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 21601777..21602285 1709..2217 2545 100 Plus
chr3L 24539361 chr3L 21587794..21588275 1..482 2395 99.8 Plus
chr3L 24539361 chr3L 21601179..21601445 1277..1543 1335 100 Plus
chr3L 24539361 chr3L 21598354..21598585 481..712 1160 100 Plus
chr3L 24539361 chr3L 21600079..21600287 881..1089 1045 100 Plus
chr3L 24539361 chr3L 21600931..21601121 1089..1279 955 100 Plus
chr3L 24539361 chr3L 21598652..21598822 710..880 855 100 Plus
chr3L 24539361 chr3L 21601546..21601716 1541..1711 855 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:39:01 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:39:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21612841..21613353 1709..2221 2550 99.8 Plus
3L 28110227 3L 21598858..21599339 1..482 2395 99.8 Plus
3L 28110227 3L 21612243..21612509 1277..1543 1335 100 Plus
3L 28110227 3L 21609418..21609649 481..712 1160 100 Plus
3L 28110227 3L 21611143..21611351 881..1089 1045 100 Plus
3L 28110227 3L 21611995..21612185 1089..1279 955 100 Plus
3L 28110227 3L 21609716..21609886 710..880 855 100 Plus
3L 28110227 3L 21612610..21612780 1541..1711 855 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:13:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 21605941..21606453 1709..2221 2550 99.8 Plus
3L 28103327 3L 21591958..21592439 1..482 2395 99.7 Plus
3L 28103327 3L 21605343..21605609 1277..1543 1335 100 Plus
3L 28103327 3L 21602518..21602749 481..712 1160 100 Plus
3L 28103327 3L 21604243..21604451 881..1089 1045 100 Plus
3L 28103327 3L 21605095..21605285 1089..1279 955 100 Plus
3L 28103327 3L 21605710..21605880 1541..1711 855 100 Plus
3L 28103327 3L 21602816..21602986 710..880 855 100 Plus
Blast to na_te.dros performed 2019-03-16 12:39:59
Subject Length Description Subject Range Query Range Score Percent Strand
transib1 2167 transib1 TRANSIB1 2167bp 1595..1658 2032..1970 128 68.8 Minus
Quasimodo 7387 Quasimodo QUASIMODO 7387bp Derived from P1 clones DS08479 & DS07153 by Sue Celniker, 29 March 2001. 1782..1885 1991..2094 124 60.4 Plus
Idefix 7411 Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). 4368..4523 1889..2043 121 56 Plus
accord2 7650 accord2 QBERT 7650bp 68..139 1978..2050 119 64.4 Plus
1360 3409 1360 1360 3409bp 2672..3052 1802..2187 119 54.8 Plus

RE17884.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:40:47 Download gff for RE17884.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 21587956..21588274 163..481 100 -> Plus
chr3L 21598355..21598585 482..712 100 -> Plus
chr3L 21598655..21598822 713..880 100 -> Plus
chr3L 21600079..21600286 881..1088 100 -> Plus
chr3L 21600931..21601120 1089..1278 100 -> Plus
chr3L 21601181..21601445 1279..1543 100 -> Plus
chr3L 21601549..21601716 1544..1711 100 -> Plus
chr3L 21601780..21602285 1712..2218 95   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:11:24 Download gff for RE17884.complete
Subject Subject Range Query Range Percent Splice Strand
AP-2-RB 1..1398 425..1822 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:14:17 Download gff for RE17884.complete
Subject Subject Range Query Range Percent Splice Strand
AP-2-RB 1..1398 425..1822 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 15:08:37 Download gff for RE17884.complete
Subject Subject Range Query Range Percent Splice Strand
TfAP-2-RB 1..1398 425..1822 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:39:35 Download gff for RE17884.complete
Subject Subject Range Query Range Percent Splice Strand
AP-2-RB 1..1398 425..1822 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:50:43 Download gff for RE17884.complete
Subject Subject Range Query Range Percent Splice Strand
TfAP-2-RB 1..1398 425..1822 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:11:23 Download gff for RE17884.complete
Subject Subject Range Query Range Percent Splice Strand
AP-2-RB 1..2217 1..2218 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:14:17 Download gff for RE17884.complete
Subject Subject Range Query Range Percent Splice Strand
AP-2-RB 1..2217 1..2218 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:08:37 Download gff for RE17884.complete
Subject Subject Range Query Range Percent Splice Strand
TfAP-2-RB 3..2219 1..2217 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:39:36 Download gff for RE17884.complete
Subject Subject Range Query Range Percent Splice Strand
AP-2-RB 1..2217 1..2218 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:50:43 Download gff for RE17884.complete
Subject Subject Range Query Range Percent Splice Strand
TfAP-2-RB 3..2219 1..2217 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:40:47 Download gff for RE17884.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21598858..21599338 1..481 99 -> Plus
3L 21609419..21609649 482..712 100 -> Plus
3L 21609719..21609886 713..880 100 -> Plus
3L 21611143..21611350 881..1088 100 -> Plus
3L 21611995..21612184 1089..1278 100 -> Plus
3L 21612245..21612509 1279..1543 100 -> Plus
3L 21612613..21612780 1544..1711 100 -> Plus
3L 21612844..21613349 1712..2218 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:40:47 Download gff for RE17884.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21598858..21599338 1..481 99 -> Plus
3L 21609419..21609649 482..712 100 -> Plus
3L 21609719..21609886 713..880 100 -> Plus
3L 21611143..21611350 881..1088 100 -> Plus
3L 21611995..21612184 1089..1278 100 -> Plus
3L 21612245..21612509 1279..1543 100 -> Plus
3L 21612613..21612780 1544..1711 100 -> Plus
3L 21612844..21613349 1712..2218 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:40:47 Download gff for RE17884.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21598858..21599338 1..481 99 -> Plus
3L 21609419..21609649 482..712 100 -> Plus
3L 21609719..21609886 713..880 100 -> Plus
3L 21611143..21611350 881..1088 100 -> Plus
3L 21611995..21612184 1089..1278 100 -> Plus
3L 21612245..21612509 1279..1543 100 -> Plus
3L 21612613..21612780 1544..1711 100 -> Plus
3L 21612844..21613349 1712..2218 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:08:37 Download gff for RE17884.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21591958..21592438 1..481 99 -> Plus
arm_3L 21602519..21602749 482..712 100 -> Plus
arm_3L 21602819..21602986 713..880 100 -> Plus
arm_3L 21604243..21604450 881..1088 100 -> Plus
arm_3L 21605095..21605284 1089..1278 100 -> Plus
arm_3L 21605345..21605609 1279..1543 100 -> Plus
arm_3L 21605713..21605880 1544..1711 100 -> Plus
arm_3L 21605944..21606449 1712..2218 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:16:13 Download gff for RE17884.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21591958..21592438 1..481 99 -> Plus
3L 21602519..21602749 482..712 100 -> Plus
3L 21602819..21602986 713..880 100 -> Plus
3L 21604243..21604450 881..1088 100 -> Plus
3L 21605095..21605284 1089..1278 100 -> Plus
3L 21605345..21605609 1279..1543 100 -> Plus
3L 21605713..21605880 1544..1711 100 -> Plus
3L 21605944..21606449 1712..2218 99   Plus

RE17884.hyp Sequence

Translation from 424 to 1821

> RE17884.hyp
MHILHRTNDHQFEDQKFMMERLSGHGSLGLSSGSAAYTTHSGGHTGRSGP
ATGHSGHSSTHGSAATMHHQSLQSDFQPPYFPPPFHHSTQSPPQQQNHGA
LEYLGTDPYGQPLSSLHHAPLHHYNQLAGLRSTQDQLGIHRTHREAELQG
HVTQLSHGFPYTDRRSDYGSAISAGAAHGTRLGHEHESLALHQALQNAVD
DVQAPALDDNVAFMSDLPLIKSMKSGKEAGNIGSGSPSEVFCAVPGRLSL
LSSTSKYKVTIAEVQRRLSPPECLNASLLGGVLRRAKSKNGGRLLREKLE
KIGLNLPAGRRKAANVTLLTSLVEGEATHLAKDFHFVCETEFPARQLAEY
IVRHQTEPQDSYRRKELILHSQQITKELMQILSQDRTTHFGTRSQHLLEP
SMQRHLTHFSLITHGFGSPAIMAVLHAFQTFLNESLNYLEKLYPSNGGGM
VSSSLDKSKIDNEKK*

RE17884.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:35:21
Subject Length Description Subject Range Query Range Score Percent Strand
TfAP-2-PB 465 CG7807-PB 1..465 1..465 2437 100 Plus
TfAP-2-PD 471 CG7807-PD 1..471 1..465 2420 98.7 Plus
TfAP-2-PC 459 CG7807-PC 8..459 14..465 2332 98.9 Plus
TfAP-2-PA 461 CG7807-PA 14..461 18..465 2331 99.6 Plus
TfAP-2-PF 465 CG7807-PF 8..465 14..465 2315 97.6 Plus

RE17884.pep Sequence

Translation from 424 to 1821

> RE17884.pep
MHILHRTNDHQFEDQKFMMERLSGHGSLGLSSGSAAYTTHSGGHTGRSGP
ATGHSGHSSTHGSAATMHHQSLQSDFQPPYFPPPFHHSTQSPPQQQNHGA
LEYLGTDPYGQPLSSLHHAPLHHYNQLAGLRSTQDQLGIHRTHREAELQG
HVTQLSHGFPYTDRRSDYGSAISAGAAHGTRLGHEHESLALHQALQNAVD
DVQAPALDDNVAFMSDLPLIKSMKSGKEAGNIGSGSPSEVFCAVPGRLSL
LSSTSKYKVTIAEVQRRLSPPECLNASLLGGVLRRAKSKNGGRLLREKLE
KIGLNLPAGRRKAANVTLLTSLVEGEATHLAKDFHFVCETEFPARQLAEY
IVRHQTEPQDSYRRKELILHSQQITKELMQILSQDRTTHFGTRSQHLLEP
SMQRHLTHFSLITHGFGSPAIMAVLHAFQTFLNESLNYLEKLYPSNGGGM
VSSSLDKSKIDNEKK*

RE17884.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:24:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23730-PA 459 GF23730-PA 14..459 18..465 2306 98.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:24:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16206-PA 461 GG16206-PA 14..461 18..465 2342 99.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:24:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14383-PA 460 GH14383-PA 32..460 36..465 2046 95.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:27:47
Subject Length Description Subject Range Query Range Score Percent Strand
TfAP-2-PB 465 CG7807-PB 1..465 1..465 2437 100 Plus
TfAP-2-PD 471 CG7807-PD 1..471 1..465 2420 98.7 Plus
TfAP-2-PC 459 CG7807-PC 8..459 14..465 2332 98.9 Plus
TfAP-2-PA 461 CG7807-PA 14..461 18..465 2331 99.6 Plus
TfAP-2-PF 465 CG7807-PF 8..465 14..465 2315 97.6 Plus
TfAP-2-PE 467 CG7807-PE 14..467 18..465 2314 98.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:24:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11327-PA 459 GI11327-PA 32..459 36..465 2104 96.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:24:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18109-PA 252 GL18109-PA 1..252 214..465 1317 98.8 Plus
Dper\GL20666-PA 138 GL20666-PA 16..133 35..152 430 86.4 Plus
Dper\GL18107-PA 67 GL18107-PA 2..32 141..171 149 83.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:24:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA28469-PA 460 GA28469-PA 13..460 18..465 2298 96.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:24:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22388-PA 461 GM22388-PA 14..461 18..465 2348 99.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:24:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14977-PA 461 GD14977-PA 14..461 18..465 2339 99.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:24:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11582-PA 460 GJ11582-PA 32..460 36..465 2064 96.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:24:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18142-PA 458 GK18142-PA 32..458 36..465 2119 96.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:24:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23038-PA 461 GE23038-PA 14..461 18..465 2344 99.3 Plus
Dyak\GE19777-PA 461 GE19777-PA 14..461 18..465 2344 99.3 Plus