Clone RE18076 Report

Search the DGRC for RE18076

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:180
Well:76
Vector:pFlc-1
Associated Gene/TranscriptCG12011-RA
Protein status:RE18076.pep: gold
Preliminary Size:1561
Sequenced Size:1738

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12011 2001-12-14 Blastp of sequenced clone
CG12011 2002-01-01 Sim4 clustering to Release 2
CG12011 2003-01-01 Sim4 clustering to Release 3
CG12011 2008-04-29 Release 5.5 accounting
CG12011 2008-08-15 Release 5.9 accounting
CG12011 2008-12-18 5.12 accounting

Clone Sequence Records

RE18076.complete Sequence

1738 bp (1738 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071146

> RE18076.complete
ACAGTTCAACTGAAACCCTCATCATGCATTCTCTACGACTCCTGGTTCTT
CTTGGTGTTCTGATGGCCACTCAGGGCAGAGTTCTAGAACAGGACAAGGC
TCCGGAGGTTGTCGCTTCACCTCAAGAAATCAAACCCAACGTGGAGGTCA
AGCAGGAAGTTGCCAATAAAGTGCGGGAAACCCAGCCGCAGCTGGGTGGC
GCTGTCATCTCCCAAGGCCAATCTTCTGCAGCTATCGATCAGGTTGGTGT
GAAGGAGGGTCAAGATCAGGTGGCGAACTCCACAACTCCTGATGTCCAGG
AAAGCCAACGCGAAGGGGTTTCTTTCGTCGAAGTGACTAAAGAAAACCAG
GAAGCACATGCCCCACTGAGTAAGGTCGTCAGTAGCCCATTAGCCCCAGC
GATAGCCGAGGAAAAGCAGCCCACTTCCAATGAGATACCCAAGGACCAGG
AGCCAGGCAAAGAAGTTATAACCCAGAACCATCCCGACGTCCAAGGACGC
GACAATAAGATTCAGTTTGTGTACGAGCAGCCTGGTCAAAACCAAAACCA
GATTCCACAGATAAGCATTCAGGATCTGGAGAAGATCTTCAAGTATCAGG
GAGTGCAAGTGGTCAACGGATCTCAATCATTTAACCAGTATCCGAGCATC
TACAACAAGTTCCCATCTTACCCGAAGGTGGAATACGTTTCTGTGGTAAA
CACATCGGATGCCAATGTGACCCAGCATCTCCACAACCACACGCACTATT
ATCCCAACCAGAAGAAGCCCGGATTTCCCTTTCCCTTCCTGCCCAATCCC
TTCGAGAAACTGGAACCCGTTTATGTTAATCTTAATCAAACTACGAACTC
CACGGGCAACGTGACTTACCACACCCACATCCACGAGGAAATCAAGCCGT
TCCCCTTCCTGCCCAATCCCTTCACGGACTTCCCCAAGGTAGTGGGCCTC
AGCTTGGTGCTCCTCCCGAATCCATTCTATGTGAACAAGAACCAGGACAT
TAACCAGTCTCAGGTCGTGAGCCTGCCTGCTGGATACCAGGACAACGGGG
AGTACCAGTACTTTGGAAAGTTCCGTGCTCTTTCCGAGGAAACCCAGAAG
CAGCAGCAGAAGCAGCAATCGCAGCAGCAGCCGGCTCAGAAGCCCAATTT
CTACCTGATTCCCAATCCTCTGGCCAGTCAGGCATCCGGTGATGGTAAAA
AGGTAGATGCCAATGTCCTGCTTCCAATAAATCTGGCTGCTCTCCCACTT
CTGGTTCCGGCTCCAGAGCTGACCCAGGGTAAAGCTTCGCCCTCGGGCAG
CATCAGTTTCCAGGATCTGATTAAGGCCACCAATGTCCATGTGAGCCAGC
CCATCAAGCTGCAGGCCAACAATGGCCTCACTCAAGTGCAGAAGGAGCAG
GCTGCCATCCAACAGTTGATCCTCAGTCATCTTAGCGAGCAGCAGAAGCT
GTTCCAAAAGCAATCCGTTGCGGACGGAAAGCGCTCCCAATCCGCACAGC
CCATTGTCCAACTGCAGGAGGAGGAGGAGAGCTCCGTTCTGTTTGCCGTG
GAGATTCCGAAGCCCATCTATCGCTTCTTCAAGGGCATCTTTGGCGGTTT
CTCCAACTGAGAGGCTAACTAAAGTGATCAATACCGAAAGAACAACAAAG
AAACGAGGTGGAAACTAAGGCATATCCTTGTAGTTATTCATTAGAAATAC
AAATAAAGTTAAGTGCAAACCCAAAAAAAAAAAAAAAA

RE18076.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:43:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG12011-RA 1896 CG12011-RA 146..1869 1..1724 8620 100 Plus
CG12011.a 1606 CG12011.a 3..1015 1..1013 5065 100 Plus
CG12011.a 1606 CG12011.a 1011..1600 1135..1724 2950 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:59:28
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 1694264..1695960 26..1722 8485 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:39:09 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:59:26
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1694716..1696414 26..1724 8495 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:10:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 1694716..1696414 26..1724 8495 100 Plus
Blast to na_te.dros performed on 2019-03-16 11:59:26 has no hits.

RE18076.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:00:34 Download gff for RE18076.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 1694167..1694192 1..26 100 -> Plus
chr3L 1694265..1695960 27..1722 97   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:59:15 Download gff for RE18076.complete
Subject Subject Range Query Range Percent Splice Strand
CG12011-RA 1..1587 24..1610 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:10:04 Download gff for RE18076.complete
Subject Subject Range Query Range Percent Splice Strand
CG12011-RA 1..1587 24..1610 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 12:43:09 Download gff for RE18076.complete
Subject Subject Range Query Range Percent Splice Strand
CG12011-RA 1..1587 24..1610 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:34:15 Download gff for RE18076.complete
Subject Subject Range Query Range Percent Splice Strand
CG12011-RA 1..1587 24..1610 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:32:46 Download gff for RE18076.complete
Subject Subject Range Query Range Percent Splice Strand
CG12011-RA 1..1587 24..1610 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:39:48 Download gff for RE18076.complete
Subject Subject Range Query Range Percent Splice Strand
CG12011-RA 1..1722 1..1722 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:10:04 Download gff for RE18076.complete
Subject Subject Range Query Range Percent Splice Strand
CG12011-RA 3..1724 1..1722 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:43:09 Download gff for RE18076.complete
Subject Subject Range Query Range Percent Splice Strand
CG12011-RA 3..1724 1..1722 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:34:15 Download gff for RE18076.complete
Subject Subject Range Query Range Percent Splice Strand
CG12011-RA 1..1722 1..1722 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:32:46 Download gff for RE18076.complete
Subject Subject Range Query Range Percent Splice Strand
CG12011-RA 3..1724 1..1722 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:00:34 Download gff for RE18076.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1694619..1694644 1..26 100 -> Plus
3L 1694717..1696412 27..1722 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:00:34 Download gff for RE18076.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1694619..1694644 1..26 100 -> Plus
3L 1694717..1696412 27..1722 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:00:34 Download gff for RE18076.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1694619..1694644 1..26 100 -> Plus
3L 1694717..1696412 27..1722 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:43:09 Download gff for RE18076.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1694619..1694644 1..26 100 -> Plus
arm_3L 1694717..1696412 27..1722 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:11:25 Download gff for RE18076.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1694717..1696412 27..1722 100   Plus
3L 1694619..1694644 1..26 100 -> Plus

RE18076.hyp Sequence

Translation from 2 to 1609

> RE18076.hyp
SSTETLIMHSLRLLVLLGVLMATQGRVLEQDKAPEVVASPQEIKPNVEVK
QEVANKVRETQPQLGGAVISQGQSSAAIDQVGVKEGQDQVANSTTPDVQE
SQREGVSFVEVTKENQEAHAPLSKVVSSPLAPAIAEEKQPTSNEIPKDQE
PGKEVITQNHPDVQGRDNKIQFVYEQPGQNQNQIPQISIQDLEKIFKYQG
VQVVNGSQSFNQYPSIYNKFPSYPKVEYVSVVNTSDANVTQHLHNHTHYY
PNQKKPGFPFPFLPNPFEKLEPVYVNLNQTTNSTGNVTYHTHIHEEIKPF
PFLPNPFTDFPKVVGLSLVLLPNPFYVNKNQDINQSQVVSLPAGYQDNGE
YQYFGKFRALSEETQKQQQKQQSQQQPAQKPNFYLIPNPLASQASGDGKK
VDANVLLPINLAALPLLVPAPELTQGKASPSGSISFQDLIKATNVHVSQP
IKLQANNGLTQVQKEQAAIQQLILSHLSEQQKLFQKQSVADGKRSQSAQP
IVQLQEEEESSVLFAVEIPKPIYRFFKGIFGGFSN*

RE18076.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:49:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG12011-PA 528 CG12011-PA 1..528 8..535 2715 100 Plus

RE18076.pep Sequence

Translation from 23 to 1609

> RE18076.pep
MHSLRLLVLLGVLMATQGRVLEQDKAPEVVASPQEIKPNVEVKQEVANKV
RETQPQLGGAVISQGQSSAAIDQVGVKEGQDQVANSTTPDVQESQREGVS
FVEVTKENQEAHAPLSKVVSSPLAPAIAEEKQPTSNEIPKDQEPGKEVIT
QNHPDVQGRDNKIQFVYEQPGQNQNQIPQISIQDLEKIFKYQGVQVVNGS
QSFNQYPSIYNKFPSYPKVEYVSVVNTSDANVTQHLHNHTHYYPNQKKPG
FPFPFLPNPFEKLEPVYVNLNQTTNSTGNVTYHTHIHEEIKPFPFLPNPF
TDFPKVVGLSLVLLPNPFYVNKNQDINQSQVVSLPAGYQDNGEYQYFGKF
RALSEETQKQQQKQQSQQQPAQKPNFYLIPNPLASQASGDGKKVDANVLL
PINLAALPLLVPAPELTQGKASPSGSISFQDLIKATNVHVSQPIKLQANN
GLTQVQKEQAAIQQLILSHLSEQQKLFQKQSVADGKRSQSAQPIVQLQEE
EESSVLFAVEIPKPIYRFFKGIFGGFSN*

RE18076.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:10:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24825-PA 500 GF24825-PA 122..499 115..527 1023 60.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:10:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14815-PA 541 GG14815-PA 1..541 1..528 1756 72.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:31:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG12011-PA 528 CG12011-PA 1..528 1..528 2715 100 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:10:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11941-PA 527 GL11941-PA 14..526 14..527 809 42.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:10:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11334-PA 529 GA11334-PA 14..528 14..527 802 43.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:10:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14437-PA 531 GM14437-PA 1..531 1..528 2235 91.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:10:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13639-PA 401 GD13639-PA 1..231 1..231 944 88.4 Plus
Dsim\GD13639-PA 401 GD13639-PA 247..401 374..528 764 96.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:10:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21179-PA 524 GE21179-PA 1..524 1..528 1780 76.2 Plus