Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
RE18076.complete Sequence
1738 bp (1738 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071146
> RE18076.complete
ACAGTTCAACTGAAACCCTCATCATGCATTCTCTACGACTCCTGGTTCTT
CTTGGTGTTCTGATGGCCACTCAGGGCAGAGTTCTAGAACAGGACAAGGC
TCCGGAGGTTGTCGCTTCACCTCAAGAAATCAAACCCAACGTGGAGGTCA
AGCAGGAAGTTGCCAATAAAGTGCGGGAAACCCAGCCGCAGCTGGGTGGC
GCTGTCATCTCCCAAGGCCAATCTTCTGCAGCTATCGATCAGGTTGGTGT
GAAGGAGGGTCAAGATCAGGTGGCGAACTCCACAACTCCTGATGTCCAGG
AAAGCCAACGCGAAGGGGTTTCTTTCGTCGAAGTGACTAAAGAAAACCAG
GAAGCACATGCCCCACTGAGTAAGGTCGTCAGTAGCCCATTAGCCCCAGC
GATAGCCGAGGAAAAGCAGCCCACTTCCAATGAGATACCCAAGGACCAGG
AGCCAGGCAAAGAAGTTATAACCCAGAACCATCCCGACGTCCAAGGACGC
GACAATAAGATTCAGTTTGTGTACGAGCAGCCTGGTCAAAACCAAAACCA
GATTCCACAGATAAGCATTCAGGATCTGGAGAAGATCTTCAAGTATCAGG
GAGTGCAAGTGGTCAACGGATCTCAATCATTTAACCAGTATCCGAGCATC
TACAACAAGTTCCCATCTTACCCGAAGGTGGAATACGTTTCTGTGGTAAA
CACATCGGATGCCAATGTGACCCAGCATCTCCACAACCACACGCACTATT
ATCCCAACCAGAAGAAGCCCGGATTTCCCTTTCCCTTCCTGCCCAATCCC
TTCGAGAAACTGGAACCCGTTTATGTTAATCTTAATCAAACTACGAACTC
CACGGGCAACGTGACTTACCACACCCACATCCACGAGGAAATCAAGCCGT
TCCCCTTCCTGCCCAATCCCTTCACGGACTTCCCCAAGGTAGTGGGCCTC
AGCTTGGTGCTCCTCCCGAATCCATTCTATGTGAACAAGAACCAGGACAT
TAACCAGTCTCAGGTCGTGAGCCTGCCTGCTGGATACCAGGACAACGGGG
AGTACCAGTACTTTGGAAAGTTCCGTGCTCTTTCCGAGGAAACCCAGAAG
CAGCAGCAGAAGCAGCAATCGCAGCAGCAGCCGGCTCAGAAGCCCAATTT
CTACCTGATTCCCAATCCTCTGGCCAGTCAGGCATCCGGTGATGGTAAAA
AGGTAGATGCCAATGTCCTGCTTCCAATAAATCTGGCTGCTCTCCCACTT
CTGGTTCCGGCTCCAGAGCTGACCCAGGGTAAAGCTTCGCCCTCGGGCAG
CATCAGTTTCCAGGATCTGATTAAGGCCACCAATGTCCATGTGAGCCAGC
CCATCAAGCTGCAGGCCAACAATGGCCTCACTCAAGTGCAGAAGGAGCAG
GCTGCCATCCAACAGTTGATCCTCAGTCATCTTAGCGAGCAGCAGAAGCT
GTTCCAAAAGCAATCCGTTGCGGACGGAAAGCGCTCCCAATCCGCACAGC
CCATTGTCCAACTGCAGGAGGAGGAGGAGAGCTCCGTTCTGTTTGCCGTG
GAGATTCCGAAGCCCATCTATCGCTTCTTCAAGGGCATCTTTGGCGGTTT
CTCCAACTGAGAGGCTAACTAAAGTGATCAATACCGAAAGAACAACAAAG
AAACGAGGTGGAAACTAAGGCATATCCTTGTAGTTATTCATTAGAAATAC
AAATAAAGTTAAGTGCAAACCCAAAAAAAAAAAAAAAA
RE18076.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 19:43:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12011-RA | 1896 | CG12011-RA | 146..1869 | 1..1724 | 8620 | 100 | Plus |
CG12011.a | 1606 | CG12011.a | 3..1015 | 1..1013 | 5065 | 100 | Plus |
CG12011.a | 1606 | CG12011.a | 1011..1600 | 1135..1724 | 2950 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:59:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3L | 24539361 | chr3L | 1694264..1695960 | 26..1722 | 8485 | 100 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:39:09 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:59:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1694716..1696414 | 26..1724 | 8495 | 100 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:10:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28103327 | 3L | 1694716..1696414 | 26..1724 | 8495 | 100 | Plus |
Blast to na_te.dros performed on 2019-03-16 11:59:26 has no hits.
RE18076.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:00:34 Download gff for
RE18076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3L | 1694167..1694192 | 1..26 | 100 | -> | Plus |
chr3L | 1694265..1695960 | 27..1722 | 97 | | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:59:15 Download gff for
RE18076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12011-RA | 1..1587 | 24..1610 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:10:04 Download gff for
RE18076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12011-RA | 1..1587 | 24..1610 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 12:43:09 Download gff for
RE18076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12011-RA | 1..1587 | 24..1610 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:34:15 Download gff for
RE18076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12011-RA | 1..1587 | 24..1610 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:32:46 Download gff for
RE18076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12011-RA | 1..1587 | 24..1610 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:39:48 Download gff for
RE18076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12011-RA | 1..1722 | 1..1722 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:10:04 Download gff for
RE18076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12011-RA | 3..1724 | 1..1722 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:43:09 Download gff for
RE18076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12011-RA | 3..1724 | 1..1722 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:34:15 Download gff for
RE18076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12011-RA | 1..1722 | 1..1722 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:32:46 Download gff for
RE18076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12011-RA | 3..1724 | 1..1722 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:00:34 Download gff for
RE18076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1694619..1694644 | 1..26 | 100 | -> | Plus |
3L | 1694717..1696412 | 27..1722 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:00:34 Download gff for
RE18076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1694619..1694644 | 1..26 | 100 | -> | Plus |
3L | 1694717..1696412 | 27..1722 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:00:34 Download gff for
RE18076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1694619..1694644 | 1..26 | 100 | -> | Plus |
3L | 1694717..1696412 | 27..1722 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:43:09 Download gff for
RE18076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1694619..1694644 | 1..26 | 100 | -> | Plus |
arm_3L | 1694717..1696412 | 27..1722 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:11:25 Download gff for
RE18076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1694717..1696412 | 27..1722 | 100 | | Plus |
3L | 1694619..1694644 | 1..26 | 100 | -> | Plus |
RE18076.hyp Sequence
Translation from 2 to 1609
> RE18076.hyp
SSTETLIMHSLRLLVLLGVLMATQGRVLEQDKAPEVVASPQEIKPNVEVK
QEVANKVRETQPQLGGAVISQGQSSAAIDQVGVKEGQDQVANSTTPDVQE
SQREGVSFVEVTKENQEAHAPLSKVVSSPLAPAIAEEKQPTSNEIPKDQE
PGKEVITQNHPDVQGRDNKIQFVYEQPGQNQNQIPQISIQDLEKIFKYQG
VQVVNGSQSFNQYPSIYNKFPSYPKVEYVSVVNTSDANVTQHLHNHTHYY
PNQKKPGFPFPFLPNPFEKLEPVYVNLNQTTNSTGNVTYHTHIHEEIKPF
PFLPNPFTDFPKVVGLSLVLLPNPFYVNKNQDINQSQVVSLPAGYQDNGE
YQYFGKFRALSEETQKQQQKQQSQQQPAQKPNFYLIPNPLASQASGDGKK
VDANVLLPINLAALPLLVPAPELTQGKASPSGSISFQDLIKATNVHVSQP
IKLQANNGLTQVQKEQAAIQQLILSHLSEQQKLFQKQSVADGKRSQSAQP
IVQLQEEEESSVLFAVEIPKPIYRFFKGIFGGFSN*
RE18076.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:49:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12011-PA | 528 | CG12011-PA | 1..528 | 8..535 | 2715 | 100 | Plus |
RE18076.pep Sequence
Translation from 23 to 1609
> RE18076.pep
MHSLRLLVLLGVLMATQGRVLEQDKAPEVVASPQEIKPNVEVKQEVANKV
RETQPQLGGAVISQGQSSAAIDQVGVKEGQDQVANSTTPDVQESQREGVS
FVEVTKENQEAHAPLSKVVSSPLAPAIAEEKQPTSNEIPKDQEPGKEVIT
QNHPDVQGRDNKIQFVYEQPGQNQNQIPQISIQDLEKIFKYQGVQVVNGS
QSFNQYPSIYNKFPSYPKVEYVSVVNTSDANVTQHLHNHTHYYPNQKKPG
FPFPFLPNPFEKLEPVYVNLNQTTNSTGNVTYHTHIHEEIKPFPFLPNPF
TDFPKVVGLSLVLLPNPFYVNKNQDINQSQVVSLPAGYQDNGEYQYFGKF
RALSEETQKQQQKQQSQQQPAQKPNFYLIPNPLASQASGDGKKVDANVLL
PINLAALPLLVPAPELTQGKASPSGSISFQDLIKATNVHVSQPIKLQANN
GLTQVQKEQAAIQQLILSHLSEQQKLFQKQSVADGKRSQSAQPIVQLQEE
EESSVLFAVEIPKPIYRFFKGIFGGFSN*
RE18076.pep Blast Records
Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:10:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\GF24825-PA | 500 | GF24825-PA | 122..499 | 115..527 | 1023 | 60.4 | Plus |
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:10:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG14815-PA | 541 | GG14815-PA | 1..541 | 1..528 | 1756 | 72.8 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:31:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12011-PA | 528 | CG12011-PA | 1..528 | 1..528 | 2715 | 100 | Plus |
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:10:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dper\GL11941-PA | 527 | GL11941-PA | 14..526 | 14..527 | 809 | 42.5 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:10:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA11334-PA | 529 | GA11334-PA | 14..528 | 14..527 | 802 | 43.8 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:10:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM14437-PA | 531 | GM14437-PA | 1..531 | 1..528 | 2235 | 91.4 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:10:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD13639-PA | 401 | GD13639-PA | 1..231 | 1..231 | 944 | 88.4 | Plus |
Dsim\GD13639-PA | 401 | GD13639-PA | 247..401 | 374..528 | 764 | 96.1 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:10:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE21179-PA | 524 | GE21179-PA | 1..524 | 1..528 | 1780 | 76.2 | Plus |