BDGP Sequence Production Resources |
Search the DGRC for RE18087
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 180 |
Well: | 87 |
Vector: | pFlc-1 |
Associated Gene/Transcript | fj-RA |
Protein status: | RE18087.pep: gold |
Preliminary Size: | 3420 |
Sequenced Size: | 3565 |
Gene | Date | Evidence |
---|---|---|
CG10917 | 2001-12-14 | Blastp of sequenced clone |
CG10917 | 2002-01-01 | Sim4 clustering to Release 2 |
CG10917 | 2003-01-01 | Sim4 clustering to Release 3 |
fj | 2008-04-29 | Release 5.5 accounting |
fj | 2008-08-15 | Release 5.9 accounting |
fj | 2008-12-18 | 5.12 accounting |
3565 bp (3565 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071147
> RE18087.complete GGCCAGTCTGTCAGCGAATCTCGAAGCGAGCGGTACGCAGGCGCGCAGTC GCACATCCGTCAGCATAGCAAACGCCAGAAACCAACACCTTTAGTTCCGA TTCAGATACAGTGCGACAATCTAAACACGCGTTCGCACCACCAACCATAT CGCGGTGCAAAACGAGAAAAAGACGCGAGGCAAGGAGTGCAAACATATGT ATGGACAGCGAAATAAATAAAGCGGAGGCATAAAAATTCCTCACATCGTT CGGTGCGCAGCGACGAAGATCGAATGCGGACAAAAAGGCTAAAATACAGC GAGGCCAAATAAAAGCGTTTCGCAGCCAAGTCGAAGGTGCTCCGCCGAGT GGAGTGGCCAAGGTGCGAGACAAGAAATTAAATTGATAAAGCCTAAAAAG CGGAGCCTAGGACTTTGTCCTCTCCCTCGGCCAACAAACGTACAAACAAA CAAACCAGCGCACACACACAAACTTGTCGCGTTGTTTGCTCGGCGCGGGC AATTATCGGGCGAATATCGGGAATCTGGGAATTCGAGTGCGAAGCAACCC CACCAAAGTGTTAAAGTGTGTGCCAGAGTGTGTGTGTGCGAGTGTGTGTT AGCGGTTAGCTGGTGTGGCAAATAGCTCAGAGCCACGAAATTGCTTTTAT CGGCGCACCGAATCGCTCCGCCAACTGCTCAAGTCCAGAAATTAAAAACA AAAAGAGAAACTGTTCGGTTCGTTTGGCCGAAGGGCCAGCTAGCCATCTC GCAAAATATTAGCCCGCCGGGCTCACAACGCCAGCAAACAAACAAACAAA CGGCCAGCACAAAAATGTATAATAAAAAATTACAGCAAGTGATCGTGCAG AAAATAGATCGATAAACCCAAACCCCAAACCCCCAAACTCAAAACGAACT CGAACCCGAAAAAAAATCTGACAAAAACAACACAAAAAAAAAAAAACGCG AAAAAGCGACGCGGTCCAGCGGAGAGTATAAAAATAAATAAACGAGCGAC GATCAGCGAGCGATCAAGGAGCTAAAGCAGGAGGAGCACGTTTCTGGGTT TTTGTTTCAATTTCAATTGTGGAAATCGTAGAGGAAAAATTCGAACCGGT CTCCGCCGAGAGTCGCTAACCGAGGAGCGGAGGACGAAGCCAGCAACCGA GAACGAACCACCGATATTTATTAAACAAAGACAGAAATTAATTTCACGAT TTTGTGAGGCACCACAGCAATACTGCAATCCAGTACCACCACCCCTTTCG CTTCCATCGCCGCCCTCCATGAGCGGCTTGAACTTTGAGCCTGAGGTCTG GGCTTCCACAGGGAACTAGGGATCGGGATCTTCGGCCCGCCGGCAAAATG TACGACATCAAGCGCCTGGAAGCGGGACAACAGAAACTACAGCAAGCACA GCAACCACTGGGCCTTGACCTGAGCGGCCAGCAACAGCAACTCACCTGCA GCGTGATCACAGCGCCCGAGCATCGGGCTAATCCCAATCCCAGCTCCATT TCGCAATCCAACCCCAGCGAGGCCACCCACATGACTTTGTTGACGCTGCG CCGGCGCCGTTCGCTGCAGCGACGCGCCTGCCTTCTGAGCATCCTCGCCG CCTTCGTCTTTGGCATGGCACTGGGCGTTGTTGTGCCCATGTTCGGCCTG CCCCGCCACCAGGACTCCCCGCCAGATCTGCCGGAGGAGCAGATACAGAT GGTTGCCGTGGAGCCGCTGAGCAGCTACCGCGTGGAGTTCATCAAGGAGA CGGACGAGCTGAGTGCCGAGCAGGTATTCCGCAATGCCTTCCATCTGGAG CAGGACAAGGATGCTCCGGACTCGATGGTGGTGAAGAAATTGGACACCAA CGACGGCAGCATCAAGGAATTCCATGTGCAGCGCACCGCCAGCGGTCGTT ATCGCAAGGGTCCGGAGAGGAGGCTGTCCAAGAAGATGCCGGAAAGGGTG CAGCCACAAGAGACCTCTCGTTCTCCGACGACCTCGCCGACAAATCCTAC CAGTGAGCACCAAGCGGGATTTATTGAGGAGGACGTCTATTGGGGTCCCA CTGTGGAGCAGGCTCTGCCCAAGGGATTCGCCGCCAAGGACCAAGTCTCT TGGGAACGCTTCGTTGGAGAGCAGGGCCGAGTAGTTCGCCTGGAGCAGGG ATGCGGAAGAATGCAAAATCGCATGGTGGTCTTTGCGGATGGAACAAGGG CCTGTGCCCGCTACCGCCAGAATACGGATCAGATTCAGGGCGAGATATTC AGCTACTACTTGGGCCAGCTCTTAAACATAAGCAATCTGGCCCCGAGTGC CGCCACCGTGGTGGACACCAGCACGCCCAATTGGGCCGCTGCCCTGGGCG ACATTACACAGGCGCAGTGGAAGGAGCGCCGACCAGTGGTGCTGACCCGC TGGCTGTCCGATCTGGAGCCGGCTGGGATACCACAGCCCTTTCAGCCGCT GGAGCGGCATCTCAACAAACACGACGTCTGGAACCTGACGCGGCACATGC AATCCGAAAGGCAAGCGCAATCGCAGCCGCACGGATTACTCAAGCGGTTG GGGGCTGCCAGTTCGCCCGGCTCCGCTCATCAATCAAACGCGATTGAGGA GACAGGAACAGGAACCGAAACGGCCAACGGAGCGCTGGTGCAGCGACTAA TTGAATTGGCACAATGGTCCGATTTAATCGTCTTCGATTACCTGATCGCG AACCTCGATCGCGTGGTTAATAACCTGTACAACTTTCAATGGAACGCCGA CATCATGGCCGCGCCGGCGCACAACCTTGCCCGCCAGTCCGCCTCGCAGC TGCTCGTCTTCCTGGACAACGAAAGCGGCCTGCTGCACGGCTACCGGCTG TTGAAGAAGTACGAGGCATACCACAGCCTCCTGCTCGACAACCTGTGCGT CTTCCGGCGGCCCACAATCGACGCCCTGCGACGTTTGCGGGCGGCGGGTG CGGGACGCCGGCTGCGTGACCTCTTCGAGCGGACGACCAGCGCCGGAGTG CGGGATGTTTTACCTTCTCTGCCGGACAAGTCCGTGAAAATCCTGGTGGA GCGCATCGATCGGGTGCTGGGCCAGGTGCAGAAGTGCCAGGGCAGCTAAT GAATCGATAGCATCAGCCCTTGCCCCCCAAACACGACTGATAAGCTGTTA ATACCGAAACAGCAGTGGGTGGATCTTCACCTAGATTGGGATTGCAGTAG TCAAGGGGTCAGCGGCTTTGTCGAGGTTATATATTTTATAAAGGGGTTCT AGAAAATTGTTATTTTATAAATTGAAAACTTAAAAATGATAATCATTGGG AGTCTTTAAAAGCATATTCGATAAGCCACTGACCCAAGGAGATCCGAGTA TTAAGGGGTGATCCACTAGAATACCTATCTTGTAAATGCCAGACTCTATC CATGAGTATTAAGCTTACCTATCAGTAAATGTATCTGTATAAACTAAGCC TAGCTAGCGTTAACAATGTGTGTGATATTTGTCTAAGGAACCAGACTAAG TAGATTTCATTTTACCTTTACAACCAATAAACCACAAATATACCGAACGA AAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
fj-RA | 3549 | fj-RA | 1..3549 | 1..3549 | 17730 | 99.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 14119807..14123358 | 1..3549 | 17390 | 99.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 18232763..18236314 | 1..3552 | 17745 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 18233962..18237513 | 1..3552 | 17745 | 99.9 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 14119807..14123358 | 1..3549 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
fj-RA | 1..1752 | 1348..3099 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
fj-RA | 1..1752 | 1348..3099 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
fj-RA | 1..1752 | 1348..3099 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
fj-RA | 1..1752 | 1348..3099 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
fj-RA | 1..1752 | 1348..3099 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
fj-RA | 1..3549 | 1..3549 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
fj-RA | 1..3549 | 1..3549 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
fj-RA | 3..3551 | 1..3549 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
fj-RA | 1..3549 | 1..3549 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
fj-RA | 3..3551 | 1..3549 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 18232763..18236311 | 1..3549 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 18232763..18236311 | 1..3549 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 18232763..18236311 | 1..3549 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 14120268..14123816 | 1..3549 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 18233962..18237510 | 1..3549 | 99 | Plus |
Translation from 1347 to 3098
> RE18087.pep MYDIKRLEAGQQKLQQAQQPLGLDLSGQQQQLTCSVITAPEHRANPNPSS ISQSNPSEATHMTLLTLRRRRSLQRRACLLSILAAFVFGMALGVVVPMFG LPRHQDSPPDLPEEQIQMVAVEPLSSYRVEFIKETDELSAEQVFRNAFHL EQDKDAPDSMVVKKLDTNDGSIKEFHVQRTASGRYRKGPERRLSKKMPER VQPQETSRSPTTSPTNPTSEHQAGFIEEDVYWGPTVEQALPKGFAAKDQV SWERFVGEQGRVVRLEQGCGRMQNRMVVFADGTRACARYRQNTDQIQGEI FSYYLGQLLNISNLAPSAATVVDTSTPNWAAALGDITQAQWKERRPVVLT RWLSDLEPAGIPQPFQPLERHLNKHDVWNLTRHMQSERQAQSQPHGLLKR LGAASSPGSAHQSNAIEETGTGTETANGALVQRLIELAQWSDLIVFDYLI ANLDRVVNNLYNFQWNADIMAAPAHNLARQSASQLLVFLDNESGLLHGYR LLKKYEAYHSLLLDNLCVFRRPTIDALRRLRAAGAGRRLRDLFERTTSAG VRDVLPSLPDKSVKILVERIDRVLGQVQKCQGS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF12147-PA | 591 | GF12147-PA | 1..591 | 1..583 | 2356 | 79.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG21859-PA | 589 | GG21859-PA | 1..589 | 1..583 | 2809 | 94.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH21655-PA | 653 | GH21655-PA | 1..649 | 1..583 | 2032 | 66.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
fj-PA | 583 | CG10917-PA | 1..583 | 1..583 | 3008 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI20109-PA | 638 | GI20109-PA | 1..634 | 1..583 | 2005 | 67.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL17757-PA | 640 | GL17757-PA | 1..633 | 1..581 | 2118 | 68.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA10641-PA | 638 | GA10641-PA | 1..631 | 1..581 | 2120 | 69 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM21858-PA | 579 | GM21858-PA | 1..579 | 1..583 | 2806 | 95.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD23059-PA | 185 | GD23059-PA | 2..185 | 400..583 | 968 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ19878-PA | 656 | GJ19878-PA | 1..652 | 1..583 | 2014 | 65.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK22970-PA | 601 | GK22970-PA | 1..584 | 1..581 | 2069 | 68 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE11939-PA | 603 | GE11939-PA | 1..603 | 1..583 | 2964 | 94.2 | Plus |
Translation from 1347 to 3098
> RE18087.hyp MYDIKRLEAGQQKLQQAQQPLGLDLSGQQQQLTCSVITAPEHRANPNPSS ISQSNPSEATHMTLLTLRRRRSLQRRACLLSILAAFVFGMALGVVVPMFG LPRHQDSPPDLPEEQIQMVAVEPLSSYRVEFIKETDELSAEQVFRNAFHL EQDKDAPDSMVVKKLDTNDGSIKEFHVQRTASGRYRKGPERRLSKKMPER VQPQETSRSPTTSPTNPTSEHQAGFIEEDVYWGPTVEQALPKGFAAKDQV SWERFVGEQGRVVRLEQGCGRMQNRMVVFADGTRACARYRQNTDQIQGEI FSYYLGQLLNISNLAPSAATVVDTSTPNWAAALGDITQAQWKERRPVVLT RWLSDLEPAGIPQPFQPLERHLNKHDVWNLTRHMQSERQAQSQPHGLLKR LGAASSPGSAHQSNAIEETGTGTETANGALVQRLIELAQWSDLIVFDYLI ANLDRVVNNLYNFQWNADIMAAPAHNLARQSASQLLVFLDNESGLLHGYR LLKKYEAYHSLLLDNLCVFRRPTIDALRRLRAAGAGRRLRDLFERTTSAG VRDVLPSLPDKSVKILVERIDRVLGQVQKCQGS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
fj-PA | 583 | CG10917-PA | 1..583 | 1..583 | 3008 | 100 | Plus |