Clone RE18087 Report

Search the DGRC for RE18087

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:180
Well:87
Vector:pFlc-1
Associated Gene/Transcriptfj-RA
Protein status:RE18087.pep: gold
Preliminary Size:3420
Sequenced Size:3565

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10917 2001-12-14 Blastp of sequenced clone
CG10917 2002-01-01 Sim4 clustering to Release 2
CG10917 2003-01-01 Sim4 clustering to Release 3
fj 2008-04-29 Release 5.5 accounting
fj 2008-08-15 Release 5.9 accounting
fj 2008-12-18 5.12 accounting

Clone Sequence Records

RE18087.complete Sequence

3565 bp (3565 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071147

> RE18087.complete
GGCCAGTCTGTCAGCGAATCTCGAAGCGAGCGGTACGCAGGCGCGCAGTC
GCACATCCGTCAGCATAGCAAACGCCAGAAACCAACACCTTTAGTTCCGA
TTCAGATACAGTGCGACAATCTAAACACGCGTTCGCACCACCAACCATAT
CGCGGTGCAAAACGAGAAAAAGACGCGAGGCAAGGAGTGCAAACATATGT
ATGGACAGCGAAATAAATAAAGCGGAGGCATAAAAATTCCTCACATCGTT
CGGTGCGCAGCGACGAAGATCGAATGCGGACAAAAAGGCTAAAATACAGC
GAGGCCAAATAAAAGCGTTTCGCAGCCAAGTCGAAGGTGCTCCGCCGAGT
GGAGTGGCCAAGGTGCGAGACAAGAAATTAAATTGATAAAGCCTAAAAAG
CGGAGCCTAGGACTTTGTCCTCTCCCTCGGCCAACAAACGTACAAACAAA
CAAACCAGCGCACACACACAAACTTGTCGCGTTGTTTGCTCGGCGCGGGC
AATTATCGGGCGAATATCGGGAATCTGGGAATTCGAGTGCGAAGCAACCC
CACCAAAGTGTTAAAGTGTGTGCCAGAGTGTGTGTGTGCGAGTGTGTGTT
AGCGGTTAGCTGGTGTGGCAAATAGCTCAGAGCCACGAAATTGCTTTTAT
CGGCGCACCGAATCGCTCCGCCAACTGCTCAAGTCCAGAAATTAAAAACA
AAAAGAGAAACTGTTCGGTTCGTTTGGCCGAAGGGCCAGCTAGCCATCTC
GCAAAATATTAGCCCGCCGGGCTCACAACGCCAGCAAACAAACAAACAAA
CGGCCAGCACAAAAATGTATAATAAAAAATTACAGCAAGTGATCGTGCAG
AAAATAGATCGATAAACCCAAACCCCAAACCCCCAAACTCAAAACGAACT
CGAACCCGAAAAAAAATCTGACAAAAACAACACAAAAAAAAAAAAACGCG
AAAAAGCGACGCGGTCCAGCGGAGAGTATAAAAATAAATAAACGAGCGAC
GATCAGCGAGCGATCAAGGAGCTAAAGCAGGAGGAGCACGTTTCTGGGTT
TTTGTTTCAATTTCAATTGTGGAAATCGTAGAGGAAAAATTCGAACCGGT
CTCCGCCGAGAGTCGCTAACCGAGGAGCGGAGGACGAAGCCAGCAACCGA
GAACGAACCACCGATATTTATTAAACAAAGACAGAAATTAATTTCACGAT
TTTGTGAGGCACCACAGCAATACTGCAATCCAGTACCACCACCCCTTTCG
CTTCCATCGCCGCCCTCCATGAGCGGCTTGAACTTTGAGCCTGAGGTCTG
GGCTTCCACAGGGAACTAGGGATCGGGATCTTCGGCCCGCCGGCAAAATG
TACGACATCAAGCGCCTGGAAGCGGGACAACAGAAACTACAGCAAGCACA
GCAACCACTGGGCCTTGACCTGAGCGGCCAGCAACAGCAACTCACCTGCA
GCGTGATCACAGCGCCCGAGCATCGGGCTAATCCCAATCCCAGCTCCATT
TCGCAATCCAACCCCAGCGAGGCCACCCACATGACTTTGTTGACGCTGCG
CCGGCGCCGTTCGCTGCAGCGACGCGCCTGCCTTCTGAGCATCCTCGCCG
CCTTCGTCTTTGGCATGGCACTGGGCGTTGTTGTGCCCATGTTCGGCCTG
CCCCGCCACCAGGACTCCCCGCCAGATCTGCCGGAGGAGCAGATACAGAT
GGTTGCCGTGGAGCCGCTGAGCAGCTACCGCGTGGAGTTCATCAAGGAGA
CGGACGAGCTGAGTGCCGAGCAGGTATTCCGCAATGCCTTCCATCTGGAG
CAGGACAAGGATGCTCCGGACTCGATGGTGGTGAAGAAATTGGACACCAA
CGACGGCAGCATCAAGGAATTCCATGTGCAGCGCACCGCCAGCGGTCGTT
ATCGCAAGGGTCCGGAGAGGAGGCTGTCCAAGAAGATGCCGGAAAGGGTG
CAGCCACAAGAGACCTCTCGTTCTCCGACGACCTCGCCGACAAATCCTAC
CAGTGAGCACCAAGCGGGATTTATTGAGGAGGACGTCTATTGGGGTCCCA
CTGTGGAGCAGGCTCTGCCCAAGGGATTCGCCGCCAAGGACCAAGTCTCT
TGGGAACGCTTCGTTGGAGAGCAGGGCCGAGTAGTTCGCCTGGAGCAGGG
ATGCGGAAGAATGCAAAATCGCATGGTGGTCTTTGCGGATGGAACAAGGG
CCTGTGCCCGCTACCGCCAGAATACGGATCAGATTCAGGGCGAGATATTC
AGCTACTACTTGGGCCAGCTCTTAAACATAAGCAATCTGGCCCCGAGTGC
CGCCACCGTGGTGGACACCAGCACGCCCAATTGGGCCGCTGCCCTGGGCG
ACATTACACAGGCGCAGTGGAAGGAGCGCCGACCAGTGGTGCTGACCCGC
TGGCTGTCCGATCTGGAGCCGGCTGGGATACCACAGCCCTTTCAGCCGCT
GGAGCGGCATCTCAACAAACACGACGTCTGGAACCTGACGCGGCACATGC
AATCCGAAAGGCAAGCGCAATCGCAGCCGCACGGATTACTCAAGCGGTTG
GGGGCTGCCAGTTCGCCCGGCTCCGCTCATCAATCAAACGCGATTGAGGA
GACAGGAACAGGAACCGAAACGGCCAACGGAGCGCTGGTGCAGCGACTAA
TTGAATTGGCACAATGGTCCGATTTAATCGTCTTCGATTACCTGATCGCG
AACCTCGATCGCGTGGTTAATAACCTGTACAACTTTCAATGGAACGCCGA
CATCATGGCCGCGCCGGCGCACAACCTTGCCCGCCAGTCCGCCTCGCAGC
TGCTCGTCTTCCTGGACAACGAAAGCGGCCTGCTGCACGGCTACCGGCTG
TTGAAGAAGTACGAGGCATACCACAGCCTCCTGCTCGACAACCTGTGCGT
CTTCCGGCGGCCCACAATCGACGCCCTGCGACGTTTGCGGGCGGCGGGTG
CGGGACGCCGGCTGCGTGACCTCTTCGAGCGGACGACCAGCGCCGGAGTG
CGGGATGTTTTACCTTCTCTGCCGGACAAGTCCGTGAAAATCCTGGTGGA
GCGCATCGATCGGGTGCTGGGCCAGGTGCAGAAGTGCCAGGGCAGCTAAT
GAATCGATAGCATCAGCCCTTGCCCCCCAAACACGACTGATAAGCTGTTA
ATACCGAAACAGCAGTGGGTGGATCTTCACCTAGATTGGGATTGCAGTAG
TCAAGGGGTCAGCGGCTTTGTCGAGGTTATATATTTTATAAAGGGGTTCT
AGAAAATTGTTATTTTATAAATTGAAAACTTAAAAATGATAATCATTGGG
AGTCTTTAAAAGCATATTCGATAAGCCACTGACCCAAGGAGATCCGAGTA
TTAAGGGGTGATCCACTAGAATACCTATCTTGTAAATGCCAGACTCTATC
CATGAGTATTAAGCTTACCTATCAGTAAATGTATCTGTATAAACTAAGCC
TAGCTAGCGTTAACAATGTGTGTGATATTTGTCTAAGGAACCAGACTAAG
TAGATTTCATTTTACCTTTACAACCAATAAACCACAAATATACCGAACGA
AAAAAAAAAAAAAAA

RE18087.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:43:44
Subject Length Description Subject Range Query Range Score Percent Strand
fj-RA 3549 fj-RA 1..3549 1..3549 17730 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:23:40
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 14119807..14123358 1..3549 17390 99.4 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:39:10 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:23:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18232763..18236314 1..3552 17745 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:10:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 18233962..18237513 1..3552 17745 99.9 Plus
Blast to na_te.dros performed on 2019-03-16 19:23:39 has no hits.

RE18087.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:24:24 Download gff for RE18087.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 14119807..14123358 1..3549 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:59:16 Download gff for RE18087.complete
Subject Subject Range Query Range Percent Splice Strand
fj-RA 1..1752 1348..3099 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:10:06 Download gff for RE18087.complete
Subject Subject Range Query Range Percent Splice Strand
fj-RA 1..1752 1348..3099 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:38:43 Download gff for RE18087.complete
Subject Subject Range Query Range Percent Splice Strand
fj-RA 1..1752 1348..3099 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:34:16 Download gff for RE18087.complete
Subject Subject Range Query Range Percent Splice Strand
fj-RA 1..1752 1348..3099 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:30:03 Download gff for RE18087.complete
Subject Subject Range Query Range Percent Splice Strand
fj-RA 1..1752 1348..3099 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:39:49 Download gff for RE18087.complete
Subject Subject Range Query Range Percent Splice Strand
fj-RA 1..3549 1..3549 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:10:06 Download gff for RE18087.complete
Subject Subject Range Query Range Percent Splice Strand
fj-RA 1..3549 1..3549 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:38:43 Download gff for RE18087.complete
Subject Subject Range Query Range Percent Splice Strand
fj-RA 3..3551 1..3549 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:34:16 Download gff for RE18087.complete
Subject Subject Range Query Range Percent Splice Strand
fj-RA 1..3549 1..3549 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:30:03 Download gff for RE18087.complete
Subject Subject Range Query Range Percent Splice Strand
fj-RA 3..3551 1..3549 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:24:24 Download gff for RE18087.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18232763..18236311 1..3549 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:24:24 Download gff for RE18087.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18232763..18236311 1..3549 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:24:24 Download gff for RE18087.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18232763..18236311 1..3549 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:38:43 Download gff for RE18087.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14120268..14123816 1..3549 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:11:27 Download gff for RE18087.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18233962..18237510 1..3549 99   Plus

RE18087.pep Sequence

Translation from 1347 to 3098

> RE18087.pep
MYDIKRLEAGQQKLQQAQQPLGLDLSGQQQQLTCSVITAPEHRANPNPSS
ISQSNPSEATHMTLLTLRRRRSLQRRACLLSILAAFVFGMALGVVVPMFG
LPRHQDSPPDLPEEQIQMVAVEPLSSYRVEFIKETDELSAEQVFRNAFHL
EQDKDAPDSMVVKKLDTNDGSIKEFHVQRTASGRYRKGPERRLSKKMPER
VQPQETSRSPTTSPTNPTSEHQAGFIEEDVYWGPTVEQALPKGFAAKDQV
SWERFVGEQGRVVRLEQGCGRMQNRMVVFADGTRACARYRQNTDQIQGEI
FSYYLGQLLNISNLAPSAATVVDTSTPNWAAALGDITQAQWKERRPVVLT
RWLSDLEPAGIPQPFQPLERHLNKHDVWNLTRHMQSERQAQSQPHGLLKR
LGAASSPGSAHQSNAIEETGTGTETANGALVQRLIELAQWSDLIVFDYLI
ANLDRVVNNLYNFQWNADIMAAPAHNLARQSASQLLVFLDNESGLLHGYR
LLKKYEAYHSLLLDNLCVFRRPTIDALRRLRAAGAGRRLRDLFERTTSAG
VRDVLPSLPDKSVKILVERIDRVLGQVQKCQGS*

RE18087.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:10:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12147-PA 591 GF12147-PA 1..591 1..583 2356 79.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:10:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21859-PA 589 GG21859-PA 1..589 1..583 2809 94.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:10:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21655-PA 653 GH21655-PA 1..649 1..583 2032 66.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:27:36
Subject Length Description Subject Range Query Range Score Percent Strand
fj-PA 583 CG10917-PA 1..583 1..583 3008 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:10:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20109-PA 638 GI20109-PA 1..634 1..583 2005 67.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:10:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17757-PA 640 GL17757-PA 1..633 1..581 2118 68.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:10:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10641-PA 638 GA10641-PA 1..631 1..581 2120 69 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:10:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21858-PA 579 GM21858-PA 1..579 1..583 2806 95.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:10:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23059-PA 185 GD23059-PA 2..185 400..583 968 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:10:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19878-PA 656 GJ19878-PA 1..652 1..583 2014 65.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:10:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22970-PA 601 GK22970-PA 1..584 1..581 2069 68 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:10:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11939-PA 603 GE11939-PA 1..603 1..583 2964 94.2 Plus

RE18087.hyp Sequence

Translation from 1347 to 3098

> RE18087.hyp
MYDIKRLEAGQQKLQQAQQPLGLDLSGQQQQLTCSVITAPEHRANPNPSS
ISQSNPSEATHMTLLTLRRRRSLQRRACLLSILAAFVFGMALGVVVPMFG
LPRHQDSPPDLPEEQIQMVAVEPLSSYRVEFIKETDELSAEQVFRNAFHL
EQDKDAPDSMVVKKLDTNDGSIKEFHVQRTASGRYRKGPERRLSKKMPER
VQPQETSRSPTTSPTNPTSEHQAGFIEEDVYWGPTVEQALPKGFAAKDQV
SWERFVGEQGRVVRLEQGCGRMQNRMVVFADGTRACARYRQNTDQIQGEI
FSYYLGQLLNISNLAPSAATVVDTSTPNWAAALGDITQAQWKERRPVVLT
RWLSDLEPAGIPQPFQPLERHLNKHDVWNLTRHMQSERQAQSQPHGLLKR
LGAASSPGSAHQSNAIEETGTGTETANGALVQRLIELAQWSDLIVFDYLI
ANLDRVVNNLYNFQWNADIMAAPAHNLARQSASQLLVFLDNESGLLHGYR
LLKKYEAYHSLLLDNLCVFRRPTIDALRRLRAAGAGRRLRDLFERTTSAG
VRDVLPSLPDKSVKILVERIDRVLGQVQKCQGS*

RE18087.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:22:44
Subject Length Description Subject Range Query Range Score Percent Strand
fj-PA 583 CG10917-PA 1..583 1..583 3008 100 Plus