Clone RE18093 Report

Search the DGRC for RE18093

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:180
Well:93
Vector:pFlc-1
Associated Gene/Transcriptmsl-1-RA
Protein status:RE18093.pep: gold
Sequenced Size:3776

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10385 2002-01-01 Sim4 clustering to Release 2
msl-1 2008-04-29 Release 5.5 accounting
msl-1 2008-08-15 Release 5.9 accounting
msl-1 2008-12-18 5.12 accounting

Clone Sequence Records

RE18093.complete Sequence

3776 bp (3776 high quality bases) assembled on 2005-08-09

GenBank Submission: BT023828

> RE18093.complete
ATACTTTTAAGAGCATTTTCGGGGCGACTTTACATTGTGAGGACAATTGT
GGAAAAAGCGGTGAAAGAACGTTCAAAAACGAACCGAAAAACTGCTGCCT
AAATGCGGTCACCACGTGCGATAAGAACGCCACGTTTAAAACGATAAATC
CATTAGATTCTGGCCAAGAAAAGAGCGGTTCTTTTGCGAGGGCGAGCAAG
GAAAATTTAGTGTGGTGCGAAATTGTAATCGGGATTCTACGCATTGTACG
GCGTATCAGCTGAAGAGATTGTGTGCACCCCAAGCGACGCAAACAAAACC
AAAACAAAACAAAAGATTTGGAGAATTATGAGATCGTAGGACCGACGGCA
CGGGATTCAATTCGACTGCCATGGACAAGCGATTCAAGTGGCCGCCCAAA
AAGCGGGCCAACTACTTGGAATCGCCCTATCCCCACATACCGTCGCGTGG
CCGCCAAAGGAATCTGCACGGCCATCCCAATCAGACGCAGCATCTTCATC
AGCATCCCGGGAAGATCTATGAGCGCCAGCAATATGGCAATGGTCGTGGA
GGACATGGCGGGGGTAATAACAACTACCGAAAGCTTTTGCATTCGCTGCC
AGCTGAGCATGGTGGCGGAGCCATGGCTCCTCCTTCCTCCGGCGGAACCG
TGTGTGCCGGCGCCGATATGGTCAAGCTCATCTCGGAGAACAACAACCTG
AGGCGCATGGTTATGTTGAACTTAAACCTGATGCAGGAGCAGACGGACAG
CATAGCGGCCAAGGACAAGGAGCTGGACGACCAAAGCGCTAAGATGAGCG
TGGTGAAGGCGCAGAATGAGGAATTAAAGCAGGCCGTTGCTCAGTTGGAG
GCCGCCAACCAGGAACTATGCAAACAGCTGCGGCGAAAGAACCAGCGAAG
GAACGACAATGACGACGACGACGATGATCCCCCACTGCCACCTGCTGCCC
CGCAGCAGAAGTTGATACGTTGTCATGCTGAGACGCAAACTGTGTTTCGG
GAGCGGGAACAGGGCACACAAACGATAGATGCGCAGCCTCAATTCGCGAA
TGCACTTCCCAGGGGTATCAACATGAAGGAGTCTCCCGCTCTGGACCATC
ACGCTGGAGCGGTAACGAATCAGCCAGCCAGCAAACGCTCGGAGAGCAAA
GGCCGCGGTGAATTCAACGGTAAAAAGGTGAGCACGTTTATTCTCCAGCG
CATGAATCAGGACTTCGAGCACCACATCCACGAGCAAACGGAAGTAGCAG
AGGAGCACGAGATGGAGGCACATAAGGAGCAAATATCTCAGGAAGAGGAC
CAACTGGTCGCTGAGGAAGATCATCTGCATATGCAAGAAGTGCACACCGA
GGAAGTCGTTGGAGGCGATATCTTTCATGATGCTTTGGAATCAATTGAAA
TGGAAGTGGTCACCGAAGAGCTGGTTGATATGGAGGAGCATGGACAGTCC
GTGGATGCCAACGGCCATATCGAGGAGGATGATGACGAGGACGACGAAGA
TGACGAGAATAGTGATAAAGACGATGACAGTGAAGAGGATGATTATCCGT
GGATGCATAGCGATGCGGATGTAAACGCCAGAACTGAGGAAGAGCTCTGG
CAGAATCAGAATTACCTTTTGGAATTGGACCCGACGGAGGAGAAGACCTG
TGCGCCTTCGGCCCATTCAACTCCCAATCACCAGCAGAAGTCTTCGACAC
AGGCAGAGATAAGGAAAGAAGGAAATCAGAATCGGATAACTGAAAAGTTG
TTGCAACTAAAGCCTGAGCCAATGGTAGATGCATTAGAAGCGCCGATTCT
CCCGAAGTGGGTGGCTTTTAAGAAAAAGGATAAGGAACATGAATCAGTCC
CCGAGTCCCCAGAAGTACCCAAGCAGCAGCCGCATCAGGAAGATGCCATC
GTTGATCATAATGCAATAAAGAATCAGTTGGAAGTTCCCAAGCCGGACTT
AAAACCGAAGGACCAGCCCAAAGACGAACAGAGGCAGGATGGGCAGCTGG
ATGTTCGCGTGGAACCACAAGAGGATGTTCGTAAGGTACAGAAGGAAACT
CTGAAAAGGCAACCAGAGGATGCACCTAAGCACCTTCCGAAAGCGGTAGC
CCCAAAGGTTACGAAAACATCCTCTCGAGAAAGCACGTTGCCCAAGGCAA
ACACCGCTGACATAAAAGACGCTCCCGCTCAAAAAGTAATAGCCAACCAT
CAGTCCACCAAGACGCAAACGGATCCTGTAAAAACGCAGCGTTTGCAGGT
TAAGATCAGGCAGTATGAAATGCATCCTGACATGAGAACCGGCTCCTCCG
CCCCGTCTGATATTCGGAAACAAAAGAACGTTGATCCAGTTTCGACGCCC
GAGACGAAAACCATTAAAAGTAAAAGTATGTTGGTCAATGATAAAAAGAC
CACGTCGGAAACGTCTCAGAGCCCAGATCAAGAAATAGATGTGGAAACAG
TTAGAAGAAAACTGGCGGAACATTTAAAAAAGGAGCTCCTAAGCCAGAGT
CATTCGTCACAGGTTACGCTCAAGAAAATAAGAGAGAGAGTCGCCACAAA
TCTAATATATCCACCACCCAGTGCACCAGTATCCTCAACAACAATAACCC
CAGCGCCTACGCCGTCAACGACACCAACGCCTGGCTCAACGCCACAGCAT
GCGGTTACATCCTCAATGGACCAGGAAATATCTGCAGCAAAATCGAAATC
CAAGGCAGCTGAACAAATAGCAACTCCTCTGACACCTCAATCTAATAGCA
GTGTTAGCAGCACCACTTCGACTATCCGAAAAACGCTAAACAACTGTTCA
CCCCACACGTACAGCAAGGCAACGGCGAGATCGGGAAAACTGCAGTCCAG
ATTCCGCACTGCCACGTTTCCGTACAGCACGAGAACGTGGGAGGATCAGG
AGTTCCACTGTGACAACGAGTTCTTCCTGGAGGAGGCCGACGAGCTGCTG
GCGGATAACCCTAGTCTGGAGATACCCAAGTGGCGGGATGTCCCAGTGCC
ACCCAGTTCGGATAAAATTGACACAGAATTACTGAGCGATGCGACCTTCG
AGCGCCGGCACCAGAAATATGTGAAGGATGAGGTCGATCGAAAGTGTAGG
GATGCACGTTATATGAAGGAGCAGATACGGCTTGAACAGCTTCGGATGCG
ACGGAACCAAGACGAGGTGTTGGTTGCGCTGGATCCTCTGCGCGCCTCCA
CTTTCTACCCGCTGCCCGAGGACATAGAGGCCATCCAATTCGTCAACGAG
GTGACAGTTCAGGCATTCGGCGAAAACGTGGTCAACATGGAGGCGCGGGA
TGATTTCGGTGTGCCTTGGGTGGATGCAATCGAAGCGCCAACCTCCATAG
CCAGGTCCAAGGCACTGGCTGAGCCGGTGGCAACGTTGGCTAGCAAAAAA
ATACCCACCACTGCTGCCGAGGCGAGGCATCAAGAAAATCACTCCTCCTA
CGTGTTTCCCAAGCGACGCAAGCGCCAGAAGAATCGTTAGCCAGGAAACG
CCTGGGGGATCTGATACTGGAGCTAAGCAGAAGACTGTCGGTTGGGGGAA
GTCGTTGCGTTTGACATACTAATGATTTTCAGTTTTAAATCATGAATTAT
TTCTTAAGCTTAACGTGAAAGCACCAGAGTTAACAGTAACGATTACCACA
GATCGTCTAGAAGTCAAATAATCCAGAGCAGACGATGTTTATTGTATATA
TGGTTCCTCAACTGTCCGTTTTTATTTGTGTAATAAAATGAACGGAACGC
TGAAAAAAAAAAAAAAAAAAAAAAAA

RE18093.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:31:46
Subject Length Description Subject Range Query Range Score Percent Strand
msl-1-RA 5088 msl-1-RA 30..3784 1..3754 18720 99.9 Plus
msl-1.a 5297 msl-1.a 239..3993 1..3754 18720 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:41:21
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 18683722..18685868 3752..1606 10690 99.9 Minus
chr2L 23010047 chr2L 18685925..18687534 1609..1 7985 99.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:39:11 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:41:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18684982..18687130 3754..1606 10745 100 Minus
2L 23513712 2L 18687187..18688796 1609..1 7985 99.9 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:22:32
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18684982..18687130 3754..1606 10745 100 Minus
2L 23513712 2L 18687187..18688796 1609..1 7995 99.8 Minus
Blast to na_te.dros performed on 2019-03-16 02:41:19 has no hits.

RE18093.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:42:03 Download gff for RE18093.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 18683722..18685864 1610..3752 99 <- Minus
chr2L 18685925..18685987 1547..1609 100 == Minus
chr2L 18686063..18687534 1..1471 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:59:17 Download gff for RE18093.complete
Subject Subject Range Query Range Percent Splice Strand
msl-1-RA 1..3120 371..3490 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:55:04 Download gff for RE18093.complete
Subject Subject Range Query Range Percent Splice Strand
msl-1-RA 1..3120 371..3490 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:17:45 Download gff for RE18093.complete
Subject Subject Range Query Range Percent Splice Strand
msl-1-RA 1..3120 371..3490 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:35:45 Download gff for RE18093.complete
Subject Subject Range Query Range Percent Splice Strand
msl-1-RA 1..3120 371..3490 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:17:02 Download gff for RE18093.complete
Subject Subject Range Query Range Percent Splice Strand
msl-1-RA 1..3120 371..3490 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:31:03 Download gff for RE18093.complete
Subject Subject Range Query Range Percent Splice Strand
msl-1-RA 1..3753 1..3752 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:55:04 Download gff for RE18093.complete
Subject Subject Range Query Range Percent Splice Strand
msl-1-RA 1..3753 1..3752 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:17:45 Download gff for RE18093.complete
Subject Subject Range Query Range Percent Splice Strand
msl-1-RA 5..3757 1..3752 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:35:45 Download gff for RE18093.complete
Subject Subject Range Query Range Percent Splice Strand
msl-1-RA 1..3753 1..3752 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:17:02 Download gff for RE18093.complete
Subject Subject Range Query Range Percent Splice Strand
msl-1-RA 5..3757 1..3752 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:42:03 Download gff for RE18093.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18684984..18687126 1610..3752 100 <- Minus
2L 18687187..18688796 1..1609 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:42:03 Download gff for RE18093.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18684984..18687126 1610..3752 100 <- Minus
2L 18687187..18688796 1..1609 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:42:03 Download gff for RE18093.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18684984..18687126 1610..3752 100 <- Minus
2L 18687187..18688796 1..1609 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:17:45 Download gff for RE18093.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18684984..18687126 1610..3752 100 <- Minus
arm_2L 18687187..18688796 1..1609 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:14:19 Download gff for RE18093.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18684984..18687126 1610..3752 100 <- Minus
2L 18687187..18688796 1..1609 99   Minus

RE18093.pep Sequence

Translation from 370 to 3489

> RE18093.pep
MDKRFKWPPKKRANYLESPYPHIPSRGRQRNLHGHPNQTQHLHQHPGKIY
ERQQYGNGRGGHGGGNNNYRKLLHSLPAEHGGGAMAPPSSGGTVCAGADM
VKLISENNNLRRMVMLNLNLMQEQTDSIAAKDKELDDQSAKMSVVKAQNE
ELKQAVAQLEAANQELCKQLRRKNQRRNDNDDDDDDPPLPPAAPQQKLIR
CHAETQTVFREREQGTQTIDAQPQFANALPRGINMKESPALDHHAGAVTN
QPASKRSESKGRGEFNGKKVSTFILQRMNQDFEHHIHEQTEVAEEHEMEA
HKEQISQEEDQLVAEEDHLHMQEVHTEEVVGGDIFHDALESIEMEVVTEE
LVDMEEHGQSVDANGHIEEDDDEDDEDDENSDKDDDSEEDDYPWMHSDAD
VNARTEEELWQNQNYLLELDPTEEKTCAPSAHSTPNHQQKSSTQAEIRKE
GNQNRITEKLLQLKPEPMVDALEAPILPKWVAFKKKDKEHESVPESPEVP
KQQPHQEDAIVDHNAIKNQLEVPKPDLKPKDQPKDEQRQDGQLDVRVEPQ
EDVRKVQKETLKRQPEDAPKHLPKAVAPKVTKTSSRESTLPKANTADIKD
APAQKVIANHQSTKTQTDPVKTQRLQVKIRQYEMHPDMRTGSSAPSDIRK
QKNVDPVSTPETKTIKSKSMLVNDKKTTSETSQSPDQEIDVETVRRKLAE
HLKKELLSQSHSSQVTLKKIRERVATNLIYPPPSAPVSSTTITPAPTPST
TPTPGSTPQHAVTSSMDQEISAAKSKSKAAEQIATPLTPQSNSSVSSTTS
TIRKTLNNCSPHTYSKATARSGKLQSRFRTATFPYSTRTWEDQEFHCDNE
FFLEEADELLADNPSLEIPKWRDVPVPPSSDKIDTELLSDATFERRHQKY
VKDEVDRKCRDARYMKEQIRLEQLRMRRNQDEVLVALDPLRASTFYPLPE
DIEAIQFVNEVTVQAFGENVVNMEARDDFGVPWVDAIEAPTSIARSKALA
EPVATLASKKIPTTAAEARHQENHSSYVFPKRRKRQKNR*

RE18093.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 14:19:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\msl-1-PA 1271 GF14830-PA 766..1271 537..1039 1095 51.9 Plus
Dana\msl-1-PA 1271 GF14830-PA 1..471 1..438 617 44.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 14:19:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\msl-1-PA 1051 GG21693-PA 1..1051 1..1039 3995 83.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 14:19:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10167-PA 1165 GH10167-PA 959..1155 826..1029 602 58 Plus
Dgri\GH10167-PA 1165 GH10167-PA 1..195 1..190 208 31.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:31:07
Subject Length Description Subject Range Query Range Score Percent Strand
msl-1-PB 1039 CG10385-PB 1..1039 1..1039 5425 100 Plus
msl-1-PA 1039 CG10385-PA 1..1039 1..1039 5425 100 Plus
CG13185-PD 5526 CG13185-PD 4662..5242 123..722 181 19.6 Plus
ImpE1-PC 1616 CG32356-PC 590..1228 288..894 162 20.1 Plus
ImpE1-PA 1616 CG32356-PA 590..1228 288..894 162 20.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 14:19:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14201-PA 1247 GI14201-PA 899..1237 692..1029 808 54.5 Plus
Dmoj\GI14201-PA 1247 GI14201-PA 1..193 1..184 231 32.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 14:19:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18495-PA 187 GL18495-PA 1..177 853..1029 679 71.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 14:19:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\msl-1-PA 1804 GA10292-PA 1405..1794 619..1029 849 49.6 Plus
Dpse\msl-1-PA 1804 GA10292-PA 1..219 1..207 413 46.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 14:19:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17072-PA 1042 GM17072-PA 1..1042 1..1039 4386 90.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 14:19:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\msl-1-PA 1044 GD21818-PA 1..1044 1..1039 4468 90.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 14:19:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\msl-1-PA 1201 GJ20452-PA 867..1191 726..1029 798 53.8 Plus
Dvir\msl-1-PA 1201 GJ20452-PA 85..427 88..426 266 32.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 14:19:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24342-PA 1222 GK24342-PA 817..1204 666..1029 829 48.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 14:19:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\msl-1-PA 1053 GE12716-PA 1..1053 1..1039 4000 82.8 Plus

RE18093.hyp Sequence

Translation from 370 to 3489

> RE18093.hyp
MDKRFKWPPKKRANYLESPYPHIPSRGRQRNLHGHPNQTQHLHQHPGKIY
ERQQYGNGRGGHGGGNNNYRKLLHSLPAEHGGGAMAPPSSGGTVCAGADM
VKLISENNNLRRMVMLNLNLMQEQTDSIAAKDKELDDQSAKMSVVKAQNE
ELKQAVAQLEAANQELCKQLRRKNQRRNDNDDDDDDPPLPPAAPQQKLIR
CHAETQTVFREREQGTQTIDAQPQFANALPRGINMKESPALDHHAGAVTN
QPASKRSESKGRGEFNGKKVSTFILQRMNQDFEHHIHEQTEVAEEHEMEA
HKEQISQEEDQLVAEEDHLHMQEVHTEEVVGGDIFHDALESIEMEVVTEE
LVDMEEHGQSVDANGHIEEDDDEDDEDDENSDKDDDSEEDDYPWMHSDAD
VNARTEEELWQNQNYLLELDPTEEKTCAPSAHSTPNHQQKSSTQAEIRKE
GNQNRITEKLLQLKPEPMVDALEAPILPKWVAFKKKDKEHESVPESPEVP
KQQPHQEDAIVDHNAIKNQLEVPKPDLKPKDQPKDEQRQDGQLDVRVEPQ
EDVRKVQKETLKRQPEDAPKHLPKAVAPKVTKTSSRESTLPKANTADIKD
APAQKVIANHQSTKTQTDPVKTQRLQVKIRQYEMHPDMRTGSSAPSDIRK
QKNVDPVSTPETKTIKSKSMLVNDKKTTSETSQSPDQEIDVETVRRKLAE
HLKKELLSQSHSSQVTLKKIRERVATNLIYPPPSAPVSSTTITPAPTPST
TPTPGSTPQHAVTSSMDQEISAAKSKSKAAEQIATPLTPQSNSSVSSTTS
TIRKTLNNCSPHTYSKATARSGKLQSRFRTATFPYSTRTWEDQEFHCDNE
FFLEEADELLADNPSLEIPKWRDVPVPPSSDKIDTELLSDATFERRHQKY
VKDEVDRKCRDARYMKEQIRLEQLRMRRNQDEVLVALDPLRASTFYPLPE
DIEAIQFVNEVTVQAFGENVVNMEARDDFGVPWVDAIEAPTSIARSKALA
EPVATLASKKIPTTAAEARHQENHSSYVFPKRRKRQKNR*

RE18093.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:23:45
Subject Length Description Subject Range Query Range Score Percent Strand
msl-1-PB 1039 CG10385-PB 1..1039 1..1039 5425 100 Plus
msl-1-PA 1039 CG10385-PA 1..1039 1..1039 5425 100 Plus
CG13185-PD 5526 CG13185-PD 4662..5242 123..722 181 19.6 Plus
ImpE1-PC 1616 CG32356-PC 590..1228 288..894 162 20.1 Plus
ImpE1-PA 1616 CG32356-PA 590..1228 288..894 162 20.1 Plus