BDGP Sequence Production Resources |
Search the DGRC for RE18093
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 180 |
Well: | 93 |
Vector: | pFlc-1 |
Associated Gene/Transcript | msl-1-RA |
Protein status: | RE18093.pep: gold |
Sequenced Size: | 3776 |
Gene | Date | Evidence |
---|---|---|
CG10385 | 2002-01-01 | Sim4 clustering to Release 2 |
msl-1 | 2008-04-29 | Release 5.5 accounting |
msl-1 | 2008-08-15 | Release 5.9 accounting |
msl-1 | 2008-12-18 | 5.12 accounting |
3776 bp (3776 high quality bases) assembled on 2005-08-09
GenBank Submission: BT023828
> RE18093.complete ATACTTTTAAGAGCATTTTCGGGGCGACTTTACATTGTGAGGACAATTGT GGAAAAAGCGGTGAAAGAACGTTCAAAAACGAACCGAAAAACTGCTGCCT AAATGCGGTCACCACGTGCGATAAGAACGCCACGTTTAAAACGATAAATC CATTAGATTCTGGCCAAGAAAAGAGCGGTTCTTTTGCGAGGGCGAGCAAG GAAAATTTAGTGTGGTGCGAAATTGTAATCGGGATTCTACGCATTGTACG GCGTATCAGCTGAAGAGATTGTGTGCACCCCAAGCGACGCAAACAAAACC AAAACAAAACAAAAGATTTGGAGAATTATGAGATCGTAGGACCGACGGCA CGGGATTCAATTCGACTGCCATGGACAAGCGATTCAAGTGGCCGCCCAAA AAGCGGGCCAACTACTTGGAATCGCCCTATCCCCACATACCGTCGCGTGG CCGCCAAAGGAATCTGCACGGCCATCCCAATCAGACGCAGCATCTTCATC AGCATCCCGGGAAGATCTATGAGCGCCAGCAATATGGCAATGGTCGTGGA GGACATGGCGGGGGTAATAACAACTACCGAAAGCTTTTGCATTCGCTGCC AGCTGAGCATGGTGGCGGAGCCATGGCTCCTCCTTCCTCCGGCGGAACCG TGTGTGCCGGCGCCGATATGGTCAAGCTCATCTCGGAGAACAACAACCTG AGGCGCATGGTTATGTTGAACTTAAACCTGATGCAGGAGCAGACGGACAG CATAGCGGCCAAGGACAAGGAGCTGGACGACCAAAGCGCTAAGATGAGCG TGGTGAAGGCGCAGAATGAGGAATTAAAGCAGGCCGTTGCTCAGTTGGAG GCCGCCAACCAGGAACTATGCAAACAGCTGCGGCGAAAGAACCAGCGAAG GAACGACAATGACGACGACGACGATGATCCCCCACTGCCACCTGCTGCCC CGCAGCAGAAGTTGATACGTTGTCATGCTGAGACGCAAACTGTGTTTCGG GAGCGGGAACAGGGCACACAAACGATAGATGCGCAGCCTCAATTCGCGAA TGCACTTCCCAGGGGTATCAACATGAAGGAGTCTCCCGCTCTGGACCATC ACGCTGGAGCGGTAACGAATCAGCCAGCCAGCAAACGCTCGGAGAGCAAA GGCCGCGGTGAATTCAACGGTAAAAAGGTGAGCACGTTTATTCTCCAGCG CATGAATCAGGACTTCGAGCACCACATCCACGAGCAAACGGAAGTAGCAG AGGAGCACGAGATGGAGGCACATAAGGAGCAAATATCTCAGGAAGAGGAC CAACTGGTCGCTGAGGAAGATCATCTGCATATGCAAGAAGTGCACACCGA GGAAGTCGTTGGAGGCGATATCTTTCATGATGCTTTGGAATCAATTGAAA TGGAAGTGGTCACCGAAGAGCTGGTTGATATGGAGGAGCATGGACAGTCC GTGGATGCCAACGGCCATATCGAGGAGGATGATGACGAGGACGACGAAGA TGACGAGAATAGTGATAAAGACGATGACAGTGAAGAGGATGATTATCCGT GGATGCATAGCGATGCGGATGTAAACGCCAGAACTGAGGAAGAGCTCTGG CAGAATCAGAATTACCTTTTGGAATTGGACCCGACGGAGGAGAAGACCTG TGCGCCTTCGGCCCATTCAACTCCCAATCACCAGCAGAAGTCTTCGACAC AGGCAGAGATAAGGAAAGAAGGAAATCAGAATCGGATAACTGAAAAGTTG TTGCAACTAAAGCCTGAGCCAATGGTAGATGCATTAGAAGCGCCGATTCT CCCGAAGTGGGTGGCTTTTAAGAAAAAGGATAAGGAACATGAATCAGTCC CCGAGTCCCCAGAAGTACCCAAGCAGCAGCCGCATCAGGAAGATGCCATC GTTGATCATAATGCAATAAAGAATCAGTTGGAAGTTCCCAAGCCGGACTT AAAACCGAAGGACCAGCCCAAAGACGAACAGAGGCAGGATGGGCAGCTGG ATGTTCGCGTGGAACCACAAGAGGATGTTCGTAAGGTACAGAAGGAAACT CTGAAAAGGCAACCAGAGGATGCACCTAAGCACCTTCCGAAAGCGGTAGC CCCAAAGGTTACGAAAACATCCTCTCGAGAAAGCACGTTGCCCAAGGCAA ACACCGCTGACATAAAAGACGCTCCCGCTCAAAAAGTAATAGCCAACCAT CAGTCCACCAAGACGCAAACGGATCCTGTAAAAACGCAGCGTTTGCAGGT TAAGATCAGGCAGTATGAAATGCATCCTGACATGAGAACCGGCTCCTCCG CCCCGTCTGATATTCGGAAACAAAAGAACGTTGATCCAGTTTCGACGCCC GAGACGAAAACCATTAAAAGTAAAAGTATGTTGGTCAATGATAAAAAGAC CACGTCGGAAACGTCTCAGAGCCCAGATCAAGAAATAGATGTGGAAACAG TTAGAAGAAAACTGGCGGAACATTTAAAAAAGGAGCTCCTAAGCCAGAGT CATTCGTCACAGGTTACGCTCAAGAAAATAAGAGAGAGAGTCGCCACAAA TCTAATATATCCACCACCCAGTGCACCAGTATCCTCAACAACAATAACCC CAGCGCCTACGCCGTCAACGACACCAACGCCTGGCTCAACGCCACAGCAT GCGGTTACATCCTCAATGGACCAGGAAATATCTGCAGCAAAATCGAAATC CAAGGCAGCTGAACAAATAGCAACTCCTCTGACACCTCAATCTAATAGCA GTGTTAGCAGCACCACTTCGACTATCCGAAAAACGCTAAACAACTGTTCA CCCCACACGTACAGCAAGGCAACGGCGAGATCGGGAAAACTGCAGTCCAG ATTCCGCACTGCCACGTTTCCGTACAGCACGAGAACGTGGGAGGATCAGG AGTTCCACTGTGACAACGAGTTCTTCCTGGAGGAGGCCGACGAGCTGCTG GCGGATAACCCTAGTCTGGAGATACCCAAGTGGCGGGATGTCCCAGTGCC ACCCAGTTCGGATAAAATTGACACAGAATTACTGAGCGATGCGACCTTCG AGCGCCGGCACCAGAAATATGTGAAGGATGAGGTCGATCGAAAGTGTAGG GATGCACGTTATATGAAGGAGCAGATACGGCTTGAACAGCTTCGGATGCG ACGGAACCAAGACGAGGTGTTGGTTGCGCTGGATCCTCTGCGCGCCTCCA CTTTCTACCCGCTGCCCGAGGACATAGAGGCCATCCAATTCGTCAACGAG GTGACAGTTCAGGCATTCGGCGAAAACGTGGTCAACATGGAGGCGCGGGA TGATTTCGGTGTGCCTTGGGTGGATGCAATCGAAGCGCCAACCTCCATAG CCAGGTCCAAGGCACTGGCTGAGCCGGTGGCAACGTTGGCTAGCAAAAAA ATACCCACCACTGCTGCCGAGGCGAGGCATCAAGAAAATCACTCCTCCTA CGTGTTTCCCAAGCGACGCAAGCGCCAGAAGAATCGTTAGCCAGGAAACG CCTGGGGGATCTGATACTGGAGCTAAGCAGAAGACTGTCGGTTGGGGGAA GTCGTTGCGTTTGACATACTAATGATTTTCAGTTTTAAATCATGAATTAT TTCTTAAGCTTAACGTGAAAGCACCAGAGTTAACAGTAACGATTACCACA GATCGTCTAGAAGTCAAATAATCCAGAGCAGACGATGTTTATTGTATATA TGGTTCCTCAACTGTCCGTTTTTATTTGTGTAATAAAATGAACGGAACGC TGAAAAAAAAAAAAAAAAAAAAAAAA
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 18683722..18685864 | 1610..3752 | 99 | <- | Minus |
chr2L | 18685925..18685987 | 1547..1609 | 100 | == | Minus |
chr2L | 18686063..18687534 | 1..1471 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
msl-1-RA | 1..3120 | 371..3490 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
msl-1-RA | 1..3120 | 371..3490 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
msl-1-RA | 1..3120 | 371..3490 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
msl-1-RA | 1..3120 | 371..3490 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
msl-1-RA | 1..3120 | 371..3490 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
msl-1-RA | 1..3753 | 1..3752 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
msl-1-RA | 1..3753 | 1..3752 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
msl-1-RA | 5..3757 | 1..3752 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
msl-1-RA | 1..3753 | 1..3752 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
msl-1-RA | 5..3757 | 1..3752 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 18684984..18687126 | 1610..3752 | 100 | <- | Minus |
2L | 18687187..18688796 | 1..1609 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 18684984..18687126 | 1610..3752 | 100 | <- | Minus |
2L | 18687187..18688796 | 1..1609 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 18684984..18687126 | 1610..3752 | 100 | <- | Minus |
2L | 18687187..18688796 | 1..1609 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 18684984..18687126 | 1610..3752 | 100 | <- | Minus |
arm_2L | 18687187..18688796 | 1..1609 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 18684984..18687126 | 1610..3752 | 100 | <- | Minus |
2L | 18687187..18688796 | 1..1609 | 99 | Minus |
Translation from 370 to 3489
> RE18093.pep MDKRFKWPPKKRANYLESPYPHIPSRGRQRNLHGHPNQTQHLHQHPGKIY ERQQYGNGRGGHGGGNNNYRKLLHSLPAEHGGGAMAPPSSGGTVCAGADM VKLISENNNLRRMVMLNLNLMQEQTDSIAAKDKELDDQSAKMSVVKAQNE ELKQAVAQLEAANQELCKQLRRKNQRRNDNDDDDDDPPLPPAAPQQKLIR CHAETQTVFREREQGTQTIDAQPQFANALPRGINMKESPALDHHAGAVTN QPASKRSESKGRGEFNGKKVSTFILQRMNQDFEHHIHEQTEVAEEHEMEA HKEQISQEEDQLVAEEDHLHMQEVHTEEVVGGDIFHDALESIEMEVVTEE LVDMEEHGQSVDANGHIEEDDDEDDEDDENSDKDDDSEEDDYPWMHSDAD VNARTEEELWQNQNYLLELDPTEEKTCAPSAHSTPNHQQKSSTQAEIRKE GNQNRITEKLLQLKPEPMVDALEAPILPKWVAFKKKDKEHESVPESPEVP KQQPHQEDAIVDHNAIKNQLEVPKPDLKPKDQPKDEQRQDGQLDVRVEPQ EDVRKVQKETLKRQPEDAPKHLPKAVAPKVTKTSSRESTLPKANTADIKD APAQKVIANHQSTKTQTDPVKTQRLQVKIRQYEMHPDMRTGSSAPSDIRK QKNVDPVSTPETKTIKSKSMLVNDKKTTSETSQSPDQEIDVETVRRKLAE HLKKELLSQSHSSQVTLKKIRERVATNLIYPPPSAPVSSTTITPAPTPST TPTPGSTPQHAVTSSMDQEISAAKSKSKAAEQIATPLTPQSNSSVSSTTS TIRKTLNNCSPHTYSKATARSGKLQSRFRTATFPYSTRTWEDQEFHCDNE FFLEEADELLADNPSLEIPKWRDVPVPPSSDKIDTELLSDATFERRHQKY VKDEVDRKCRDARYMKEQIRLEQLRMRRNQDEVLVALDPLRASTFYPLPE DIEAIQFVNEVTVQAFGENVVNMEARDDFGVPWVDAIEAPTSIARSKALA EPVATLASKKIPTTAAEARHQENHSSYVFPKRRKRQKNR*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\msl-1-PA | 1271 | GF14830-PA | 766..1271 | 537..1039 | 1095 | 51.9 | Plus |
Dana\msl-1-PA | 1271 | GF14830-PA | 1..471 | 1..438 | 617 | 44.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\msl-1-PA | 1051 | GG21693-PA | 1..1051 | 1..1039 | 3995 | 83.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH10167-PA | 1165 | GH10167-PA | 959..1155 | 826..1029 | 602 | 58 | Plus |
Dgri\GH10167-PA | 1165 | GH10167-PA | 1..195 | 1..190 | 208 | 31.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
msl-1-PB | 1039 | CG10385-PB | 1..1039 | 1..1039 | 5425 | 100 | Plus |
msl-1-PA | 1039 | CG10385-PA | 1..1039 | 1..1039 | 5425 | 100 | Plus |
CG13185-PD | 5526 | CG13185-PD | 4662..5242 | 123..722 | 181 | 19.6 | Plus |
ImpE1-PC | 1616 | CG32356-PC | 590..1228 | 288..894 | 162 | 20.1 | Plus |
ImpE1-PA | 1616 | CG32356-PA | 590..1228 | 288..894 | 162 | 20.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI14201-PA | 1247 | GI14201-PA | 899..1237 | 692..1029 | 808 | 54.5 | Plus |
Dmoj\GI14201-PA | 1247 | GI14201-PA | 1..193 | 1..184 | 231 | 32.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL18495-PA | 187 | GL18495-PA | 1..177 | 853..1029 | 679 | 71.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\msl-1-PA | 1804 | GA10292-PA | 1405..1794 | 619..1029 | 849 | 49.6 | Plus |
Dpse\msl-1-PA | 1804 | GA10292-PA | 1..219 | 1..207 | 413 | 46.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM17072-PA | 1042 | GM17072-PA | 1..1042 | 1..1039 | 4386 | 90.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\msl-1-PA | 1044 | GD21818-PA | 1..1044 | 1..1039 | 4468 | 90.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\msl-1-PA | 1201 | GJ20452-PA | 867..1191 | 726..1029 | 798 | 53.8 | Plus |
Dvir\msl-1-PA | 1201 | GJ20452-PA | 85..427 | 88..426 | 266 | 32.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK24342-PA | 1222 | GK24342-PA | 817..1204 | 666..1029 | 829 | 48.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\msl-1-PA | 1053 | GE12716-PA | 1..1053 | 1..1039 | 4000 | 82.8 | Plus |
Translation from 370 to 3489
> RE18093.hyp MDKRFKWPPKKRANYLESPYPHIPSRGRQRNLHGHPNQTQHLHQHPGKIY ERQQYGNGRGGHGGGNNNYRKLLHSLPAEHGGGAMAPPSSGGTVCAGADM VKLISENNNLRRMVMLNLNLMQEQTDSIAAKDKELDDQSAKMSVVKAQNE ELKQAVAQLEAANQELCKQLRRKNQRRNDNDDDDDDPPLPPAAPQQKLIR CHAETQTVFREREQGTQTIDAQPQFANALPRGINMKESPALDHHAGAVTN QPASKRSESKGRGEFNGKKVSTFILQRMNQDFEHHIHEQTEVAEEHEMEA HKEQISQEEDQLVAEEDHLHMQEVHTEEVVGGDIFHDALESIEMEVVTEE LVDMEEHGQSVDANGHIEEDDDEDDEDDENSDKDDDSEEDDYPWMHSDAD VNARTEEELWQNQNYLLELDPTEEKTCAPSAHSTPNHQQKSSTQAEIRKE GNQNRITEKLLQLKPEPMVDALEAPILPKWVAFKKKDKEHESVPESPEVP KQQPHQEDAIVDHNAIKNQLEVPKPDLKPKDQPKDEQRQDGQLDVRVEPQ EDVRKVQKETLKRQPEDAPKHLPKAVAPKVTKTSSRESTLPKANTADIKD APAQKVIANHQSTKTQTDPVKTQRLQVKIRQYEMHPDMRTGSSAPSDIRK QKNVDPVSTPETKTIKSKSMLVNDKKTTSETSQSPDQEIDVETVRRKLAE HLKKELLSQSHSSQVTLKKIRERVATNLIYPPPSAPVSSTTITPAPTPST TPTPGSTPQHAVTSSMDQEISAAKSKSKAAEQIATPLTPQSNSSVSSTTS TIRKTLNNCSPHTYSKATARSGKLQSRFRTATFPYSTRTWEDQEFHCDNE FFLEEADELLADNPSLEIPKWRDVPVPPSSDKIDTELLSDATFERRHQKY VKDEVDRKCRDARYMKEQIRLEQLRMRRNQDEVLVALDPLRASTFYPLPE DIEAIQFVNEVTVQAFGENVVNMEARDDFGVPWVDAIEAPTSIARSKALA EPVATLASKKIPTTAAEARHQENHSSYVFPKRRKRQKNR*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
msl-1-PB | 1039 | CG10385-PB | 1..1039 | 1..1039 | 5425 | 100 | Plus |
msl-1-PA | 1039 | CG10385-PA | 1..1039 | 1..1039 | 5425 | 100 | Plus |
CG13185-PD | 5526 | CG13185-PD | 4662..5242 | 123..722 | 181 | 19.6 | Plus |
ImpE1-PC | 1616 | CG32356-PC | 590..1228 | 288..894 | 162 | 20.1 | Plus |
ImpE1-PA | 1616 | CG32356-PA | 590..1228 | 288..894 | 162 | 20.1 | Plus |