Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
RE18107.complete Sequence
1308 bp (1308 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071149
> RE18107.complete
GATTTATGCCACGCTTGTCACATTAACAACAACCGCAAAATGTTTTAAAC
AAGCCACGAAAATCTCCGAGATTCCGTGGAAATATTTCAACATTTTTCAA
AAGATTTGTGAAGTGAAGCATAGAAAAAAATTACAAAAAGTGTACAGCAA
TTAATTACAGAACCACTAATTAATTAAAATTGAACGAAACGCAAATGGAA
TTGTAAAGCGCATTAAAAAATAGGGTACAAAATAGTTGAAGAAGTGTAGT
GGGCAATTAATAAAGAAAGAGAGAAGTGTCTAAACAAAATGCAGTTAAAT
ACCCTGCGGCTTGCCTTGATTTTCCTAAGTTTTGTTCGCCTGGAGGCGCA
GGCTAATGTTCAGAATAATGGCTGGCAGAAGGTGTTGCCTGATGACTTCA
GACGAGAACGTGATAAAAGTTCAACCAGAACGCGCCGGAATCCGCAGGAG
GAATTGCGCCTGAGACACGAGCAGCATCATTTGCGCCTGCAGCAACATCA
GATGGCGTGGGAGCTGGACTTGCAGCGGCAGCTGCAGCAGCATCTGCAGG
AGCAGCAGTCGGAGCAGTCGGAGCAGCAGAGCCGGCCGGTGCGTCATCAT
CAGCATAAATCTCACACCAAGGAACTGGCCAAGAAGCCCATTAGACGGGC
ACCGAGTTTCGGCGATGACAAGGCCAAGATGGTGCAGAAGCGCAGACTAC
ACTACAACGAGTACGATAACGAAGATCTCGAGCTGCACACCATCGAAACC
GGCGATCAGGGGACCTTCACCCCGCGGCAGTGGCAGCAAATCGAGATTGC
CCATCGGCGGCAGAAGGAGCAACATCAATTGCAGTTGCTGGCGCAACGAC
AACAGCAGCGACAACTGCTGACAACGACAACGGCAACGGCAACGGCAATG
GCAATGGCAACAACGTCGAAAGCAACGGAACCCAATGATGCCAAATCGGA
GGATAATGATGTGAGTGAATCCAAGGGGGATTCGATTTAATGGGTTGGAC
ACAGAGCAGGAAGTATTTTGGCCAGCAAAGTGGGATTCTGGGGAATCTCG
GTGTGCTTGGCATACTTGAAATTTCCGATATCTTTTGTGTTCTCATATAT
TTGTTTTGTTCCTGCAGATGTTTTGCGTTTGTGACCTCACAATTTGAGTT
TCCAGTAAGCTTTATTTCCATTTTCTGCTATTTATGGCCTTTAATTCCTC
TTATTTAATTTTCTATTACATTTAGTTACGTAAAATGTAATACAATTAAG
ATTTAGTATTTTAAATAAAACTATTATAAAAAATCAATGCTGAAAAAAAA
AAAAAAAA
RE18107.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 19:42:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pvf3.h | 2246 | Pvf3.h | 81..1047 | 1..967 | 4820 | 99.8 | Plus |
Pvf3.i | 2207 | Pvf3.i | 81..1041 | 1..961 | 4805 | 100 | Plus |
Pvf3.c | 2298 | Pvf3.c | 1..814 | 154..967 | 4055 | 99.8 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:38:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr2L | 23010047 | chr2L | 7131486..7132776 | 1291..1 | 6455 | 100 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:39:13 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:38:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7132393..7133683 | 1291..1 | 6455 | 100 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:09:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7132393..7133683 | 1291..1 | 6455 | 100 | Minus |
Blast to na_te.dros performed 2019-03-15 22:38:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2757..2870 | 814..928 | 221 | 67 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2421 | 809..926 | 219 | 67.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2400..2883 | 445..926 | 215 | 53.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6854 | 811..932 | 211 | 64.8 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1076..1171 | 802..898 | 203 | 69.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6878 | 778..932 | 195 | 59.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2255..2420 | 452..620 | 189 | 59.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6827 | 818..926 | 182 | 64.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2469 | 772..914 | 171 | 59.6 | Plus |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7141..7226 | 842..926 | 157 | 66.3 | Plus |
TART-C | 11124 | TART-C TARTC 11124bp | 8594..8679 | 842..926 | 157 | 66.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6794..6917 | 802..926 | 155 | 60.6 | Plus |
RE18107.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:39:18 Download gff for
RE18107.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr2L | 7131976..7132197 | 580..801 | 100 | == | Minus |
chr2L | 7131526..7131850 | 927..1251 | 100 | == | Minus |
chr2L | 7132256..7132776 | 1..521 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:59:19 Download gff for
RE18107.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pvf3-RB | 1..702 | 289..990 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:08:51 Download gff for
RE18107.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pvf3-RA | 1..685 | 289..974 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:28:15 Download gff for
RE18107.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pvf3-RA | 1..685 | 289..974 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:33:07 Download gff for
RE18107.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pvf3-RB | 1..702 | 289..990 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:31:12 Download gff for
RE18107.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pvf3-RA | 1..685 | 289..974 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:38:00 Download gff for
RE18107.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pvf3-RB | 1..1291 | 1..1292 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:08:51 Download gff for
RE18107.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pvf3-RA | 1..817 | 157..974 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:28:15 Download gff for
RE18107.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pvf3-RE | 318..1285 | 1..968 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:33:08 Download gff for
RE18107.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pvf3-RB | 1..1291 | 1..1292 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:31:12 Download gff for
RE18107.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pvf3-RE | 387..1354 | 1..968 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:39:18 Download gff for
RE18107.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7132392..7133683 | 1..1292 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:39:18 Download gff for
RE18107.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7132392..7133683 | 1..1292 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:39:18 Download gff for
RE18107.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7132392..7133683 | 1..1292 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:28:15 Download gff for
RE18107.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7132392..7133683 | 1..1292 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:10:06 Download gff for
RE18107.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7132392..7133683 | 1..1292 | 99 | | Minus |
RE18107.pep Sequence
Translation from 288 to 989
> RE18107.pep
MQLNTLRLALIFLSFVRLEAQANVQNNGWQKVLPDDFRRERDKSSTRTRR
NPQEELRLRHEQHHLRLQQHQMAWELDLQRQLQQHLQEQQSEQSEQQSRP
VRHHQHKSHTKELAKKPIRRAPSFGDDKAKMVQKRRLHYNEYDNEDLELH
TIETGDQGTFTPRQWQQIEIAHRRQKEQHQLQLLAQRQQQRQLLTTTTAT
ATAMAMATTSKATEPNDAKSEDNDVSESKGDSI*
RE18107.pep Blast Records
Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:05:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\GF24460-PA | 430 | GF24460-PA | 1..183 | 1..225 | 273 | 43 | Plus |
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:05:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG23552-PA | 476 | GG23552-PA | 12..221 | 12..229 | 769 | 78.9 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:08:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pvf3-PA | 482 | CG34378-PA | 1..229 | 1..229 | 1178 | 99.1 | Plus |
Pvf3-PE | 469 | CG34378-PE | 1..228 | 1..228 | 1166 | 98.7 | Plus |
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:05:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dper\GL16244-PA | 559 | GL16244-PA | 11..305 | 8..229 | 226 | 31.8 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:05:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM13633-PA | 477 | GM13633-PA | 1..224 | 1..229 | 836 | 83.4 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:06:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD22512-PA | 477 | GD22512-PA | 1..224 | 1..229 | 837 | 84.7 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:06:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE18376-PA | 628 | GE18376-PA | 1..229 | 1..229 | 790 | 87.8 | Plus |
RE18107.hyp Sequence
Translation from 288 to 989
> RE18107.hyp
MQLNTLRLALIFLSFVRLEAQANVQNNGWQKVLPDDFRRERDKSSTRTRR
NPQEELRLRHEQHHLRLQQHQMAWELDLQRQLQQHLQEQQSEQSEQQSRP
VRHHQHKSHTKELAKKPIRRAPSFGDDKAKMVQKRRLHYNEYDNEDLELH
TIETGDQGTFTPRQWQQIEIAHRRQKEQHQLQLLAQRQQQRQLLTTTTAT
ATAMAMATTSKATEPNDAKSEDNDVSESKGDSI*
RE18107.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:17:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pvf3-PA | 482 | CG34378-PA | 1..229 | 1..229 | 1178 | 99.1 | Plus |
Pvf3-PE | 469 | CG34378-PE | 1..228 | 1..228 | 1166 | 98.7 | Plus |