Clone RE18107 Report

Search the DGRC for RE18107

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:181
Well:7
Vector:pFlc-1
Associated Gene/TranscriptPvf3-RB
Protein status:RE18107.pep: validated full length
Preliminary Size:1280
Sequenced Size:1308

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG31629 2001-12-14 Blastp of sequenced clone
CG4492 2002-01-01 Sim4 clustering to Release 2
CG31629 2003-01-01 Sim4 clustering to Release 3
Pvf3 2008-04-29 Release 5.5 accounting
Pvf3 2008-08-15 Release 5.9 accounting
Pvf3 2008-12-18 5.12 accounting

Clone Sequence Records

RE18107.complete Sequence

1308 bp (1308 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071149

> RE18107.complete
GATTTATGCCACGCTTGTCACATTAACAACAACCGCAAAATGTTTTAAAC
AAGCCACGAAAATCTCCGAGATTCCGTGGAAATATTTCAACATTTTTCAA
AAGATTTGTGAAGTGAAGCATAGAAAAAAATTACAAAAAGTGTACAGCAA
TTAATTACAGAACCACTAATTAATTAAAATTGAACGAAACGCAAATGGAA
TTGTAAAGCGCATTAAAAAATAGGGTACAAAATAGTTGAAGAAGTGTAGT
GGGCAATTAATAAAGAAAGAGAGAAGTGTCTAAACAAAATGCAGTTAAAT
ACCCTGCGGCTTGCCTTGATTTTCCTAAGTTTTGTTCGCCTGGAGGCGCA
GGCTAATGTTCAGAATAATGGCTGGCAGAAGGTGTTGCCTGATGACTTCA
GACGAGAACGTGATAAAAGTTCAACCAGAACGCGCCGGAATCCGCAGGAG
GAATTGCGCCTGAGACACGAGCAGCATCATTTGCGCCTGCAGCAACATCA
GATGGCGTGGGAGCTGGACTTGCAGCGGCAGCTGCAGCAGCATCTGCAGG
AGCAGCAGTCGGAGCAGTCGGAGCAGCAGAGCCGGCCGGTGCGTCATCAT
CAGCATAAATCTCACACCAAGGAACTGGCCAAGAAGCCCATTAGACGGGC
ACCGAGTTTCGGCGATGACAAGGCCAAGATGGTGCAGAAGCGCAGACTAC
ACTACAACGAGTACGATAACGAAGATCTCGAGCTGCACACCATCGAAACC
GGCGATCAGGGGACCTTCACCCCGCGGCAGTGGCAGCAAATCGAGATTGC
CCATCGGCGGCAGAAGGAGCAACATCAATTGCAGTTGCTGGCGCAACGAC
AACAGCAGCGACAACTGCTGACAACGACAACGGCAACGGCAACGGCAATG
GCAATGGCAACAACGTCGAAAGCAACGGAACCCAATGATGCCAAATCGGA
GGATAATGATGTGAGTGAATCCAAGGGGGATTCGATTTAATGGGTTGGAC
ACAGAGCAGGAAGTATTTTGGCCAGCAAAGTGGGATTCTGGGGAATCTCG
GTGTGCTTGGCATACTTGAAATTTCCGATATCTTTTGTGTTCTCATATAT
TTGTTTTGTTCCTGCAGATGTTTTGCGTTTGTGACCTCACAATTTGAGTT
TCCAGTAAGCTTTATTTCCATTTTCTGCTATTTATGGCCTTTAATTCCTC
TTATTTAATTTTCTATTACATTTAGTTACGTAAAATGTAATACAATTAAG
ATTTAGTATTTTAAATAAAACTATTATAAAAAATCAATGCTGAAAAAAAA
AAAAAAAA

RE18107.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:42:55
Subject Length Description Subject Range Query Range Score Percent Strand
Pvf3.h 2246 Pvf3.h 81..1047 1..967 4820 99.8 Plus
Pvf3.i 2207 Pvf3.i 81..1041 1..961 4805 100 Plus
Pvf3.c 2298 Pvf3.c 1..814 154..967 4055 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:38:18
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 7131486..7132776 1291..1 6455 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:39:13 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:38:15
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7132393..7133683 1291..1 6455 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:09:49
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7132393..7133683 1291..1 6455 100 Minus
Blast to na_te.dros performed 2019-03-15 22:38:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2757..2870 814..928 221 67 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2305..2421 809..926 219 67.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2400..2883 445..926 215 53.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6734..6854 811..932 211 64.8 Plus
roo 9092 roo DM_ROO 9092bp 1076..1171 802..898 203 69.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6878 778..932 195 59.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2255..2420 452..620 189 59.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6827 818..926 182 64.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2325..2469 772..914 171 59.6 Plus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 7141..7226 842..926 157 66.3 Plus
TART-C 11124 TART-C TARTC 11124bp 8594..8679 842..926 157 66.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6794..6917 802..926 155 60.6 Plus

RE18107.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:39:18 Download gff for RE18107.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 7131976..7132197 580..801 100 == Minus
chr2L 7131526..7131850 927..1251 100 == Minus
chr2L 7132256..7132776 1..521 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:59:19 Download gff for RE18107.complete
Subject Subject Range Query Range Percent Splice Strand
Pvf3-RB 1..702 289..990 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:08:51 Download gff for RE18107.complete
Subject Subject Range Query Range Percent Splice Strand
Pvf3-RA 1..685 289..974 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:28:15 Download gff for RE18107.complete
Subject Subject Range Query Range Percent Splice Strand
Pvf3-RA 1..685 289..974 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:33:07 Download gff for RE18107.complete
Subject Subject Range Query Range Percent Splice Strand
Pvf3-RB 1..702 289..990 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:31:12 Download gff for RE18107.complete
Subject Subject Range Query Range Percent Splice Strand
Pvf3-RA 1..685 289..974 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:38:00 Download gff for RE18107.complete
Subject Subject Range Query Range Percent Splice Strand
Pvf3-RB 1..1291 1..1292 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:08:51 Download gff for RE18107.complete
Subject Subject Range Query Range Percent Splice Strand
Pvf3-RA 1..817 157..974 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:28:15 Download gff for RE18107.complete
Subject Subject Range Query Range Percent Splice Strand
Pvf3-RE 318..1285 1..968 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:33:08 Download gff for RE18107.complete
Subject Subject Range Query Range Percent Splice Strand
Pvf3-RB 1..1291 1..1292 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:31:12 Download gff for RE18107.complete
Subject Subject Range Query Range Percent Splice Strand
Pvf3-RE 387..1354 1..968 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:39:18 Download gff for RE18107.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7132392..7133683 1..1292 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:39:18 Download gff for RE18107.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7132392..7133683 1..1292 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:39:18 Download gff for RE18107.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7132392..7133683 1..1292 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:28:15 Download gff for RE18107.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7132392..7133683 1..1292 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:10:06 Download gff for RE18107.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7132392..7133683 1..1292 99   Minus

RE18107.pep Sequence

Translation from 288 to 989

> RE18107.pep
MQLNTLRLALIFLSFVRLEAQANVQNNGWQKVLPDDFRRERDKSSTRTRR
NPQEELRLRHEQHHLRLQQHQMAWELDLQRQLQQHLQEQQSEQSEQQSRP
VRHHQHKSHTKELAKKPIRRAPSFGDDKAKMVQKRRLHYNEYDNEDLELH
TIETGDQGTFTPRQWQQIEIAHRRQKEQHQLQLLAQRQQQRQLLTTTTAT
ATAMAMATTSKATEPNDAKSEDNDVSESKGDSI*

RE18107.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:05:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24460-PA 430 GF24460-PA 1..183 1..225 273 43 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:05:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23552-PA 476 GG23552-PA 12..221 12..229 769 78.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:08:19
Subject Length Description Subject Range Query Range Score Percent Strand
Pvf3-PA 482 CG34378-PA 1..229 1..229 1178 99.1 Plus
Pvf3-PE 469 CG34378-PE 1..228 1..228 1166 98.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:05:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16244-PA 559 GL16244-PA 11..305 8..229 226 31.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:05:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13633-PA 477 GM13633-PA 1..224 1..229 836 83.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:06:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22512-PA 477 GD22512-PA 1..224 1..229 837 84.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:06:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18376-PA 628 GE18376-PA 1..229 1..229 790 87.8 Plus

RE18107.hyp Sequence

Translation from 288 to 989

> RE18107.hyp
MQLNTLRLALIFLSFVRLEAQANVQNNGWQKVLPDDFRRERDKSSTRTRR
NPQEELRLRHEQHHLRLQQHQMAWELDLQRQLQQHLQEQQSEQSEQQSRP
VRHHQHKSHTKELAKKPIRRAPSFGDDKAKMVQKRRLHYNEYDNEDLELH
TIETGDQGTFTPRQWQQIEIAHRRQKEQHQLQLLAQRQQQRQLLTTTTAT
ATAMAMATTSKATEPNDAKSEDNDVSESKGDSI*

RE18107.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:17:47
Subject Length Description Subject Range Query Range Score Percent Strand
Pvf3-PA 482 CG34378-PA 1..229 1..229 1178 99.1 Plus
Pvf3-PE 469 CG34378-PE 1..228 1..228 1166 98.7 Plus