Clone RE18169 Report

Search the DGRC for RE18169

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:181
Well:69
Vector:pFlc-1
Associated Gene/TranscriptCG12576-RA
Protein status:RE18169.pep: gold
Preliminary Size:1492
Sequenced Size:2483

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12576 2001-12-14 Blastp of sequenced clone
CG12576 2002-01-01 Sim4 clustering to Release 2
CG12576 2003-01-01 Sim4 clustering to Release 3
CG12576 2008-04-29 Release 5.5 accounting
CG12576 2008-08-15 Release 5.9 accounting
CG12576 2008-12-18 5.12 accounting

Clone Sequence Records

RE18169.complete Sequence

2483 bp (2483 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071150

> RE18169.complete
TGTGATACATTTTGGTATTTGATTTGCGCCGGATGGTATTTTCCTTCGCC
GTGCGCGCGGTCACATTCACTGGATGTGTTTTTTTGCGCTGATTGTTGCT
CTGGCGCGATCGAATTTGCCTGGAATTCGGGAGTCAACATAATATTTTCG
AAAGTCACCAGCTATAGCGAAAATAGTCGCGGATTTTCAACAAAGAGCAA
TCATAGTGATGGTATAAAAGAGGGGAAGGACGAAAGCAAAGAGAGCAAAC
CGAAAACAGTTACTCTGCCCATGCGCACAGCTGACCCAGAACCTGGCATA
ACGGTAAAGTAATTGTGTCGTACAACAAGCGAAACTTGACAGCGAAAGGG
AACCGGAAGTCGCCTAAAATCGCGGAGCGGAAAGGAAATCAGTCCGCCAA
CCGCGGGAGCTGAAAATCGAAATCACAACCCACAAAAGCGATTCCAAAGT
GCTATCTTGGTGCTACTCCCATACAAAATGTTCCAAGTCCTGCCCCGTCC
GTCAAGATCCACGTTCCACTGCATAGCGGCAGCCGTTGTCACAGTCGTCC
TAATGTCATGGGCCCGACCGCTGGGCGTGCTATTCCTGGGACTACTTGGC
TACTGGATCTACTGGACGCGCTGCAGCTTCCGCGTTGTGCCTACGGACGA
GCTGCGCGGCAAGATCAACACCTGGCTGCAGAGGATCGACGACTGGCGCC
ACCGCAGTCCCAGCATGTTCTGCTTGGCCAGCAGCGGTTGCTTGGGCACC
CTCGCAGTGCTCGGTCACCTTATATCCGGATCAACGCTGGTACTGACCAT
CCTGGTCGTCTCCGCACTAGTCTCCACCAAGTACACCTTCAAGCTGCTGA
AGATCGAGCACAGGGACTTTCAGTGGTCGGAGAAGCTGAACTACAACAAC
TTGGAAGCCGAGGCAGAGGATGAGTTCCTGCCGGACGTGAACGAGTCGAA
TCTGTTTGTGTTGGAGCGGGCCAGCGATGTGGCCACCATAAGTTCGCCCA
CCGATGCGAATGATGAGGACGATGACGATCGCAGCGACGACGTACCGTCG
GAGCTCCTCATTCCGGATGCGATACCCGAGATTGACGAGCAATCCACCGA
CGAGGACGATGAACTAGCCCCGCTGGCGCCCAAGAGGCAGGAGAAGCTGC
AGCCACAGGAGCAGCCGGCCAAGGAGAGCGAGGATATGAACTTCCGAAAG
AGTCACTTCAAGCGTGACTCGTCGCTGTCCACATCCTCCTCGTCGGAGGA
AAGCCTGTCAAAGGGGCTGCAGTTCCCCGATCACACCACCGTAGATGCCA
CTGGCAACCCTCAGTTGCGTCAGATAACCGCTGGCCCGGATCCCGCCGGC
GAGCTTGTAGCCCTGGCCGTGAAAACGCAGGCTCAGGCGCTCCTGGCAAA
CAGCGGGAAGCTCCTGCCCAGCCTTGTTACCGGCCTGGTGCAATGGGGAG
CAGGTGGTGCTGCTGCAGCCGGTGCCAGCGATTGCACGGATTCAAATCGA
GATCGTGACCAGCAGCGCATTGTCACCGCCCTGGATTCGTCGGACGAGAG
CGATTTTGAGATACTCGAATCGGATGACTTTAAGTAAAGATTGGATCAAT
CGGCGATCGGACCGATTTGTCGTATTATAAAGCTATTGTCTTAACATACA
TATGCATACACAAATAGAACTCAAAAAATCGACAGACAAACAGACGGCGC
CAACGATTGGAGTGGTTCCAATTTCCCTGGTGGAGATCAGTTATATATTT
TGCTACACACTAGTGCTATGTATACTTATATACTAAACTAATCATCCTAC
AGTTAAGCCAAAAGTTTTCCCCAGTTTTGTTTTTCTTCCTCTTGCTTTGT
ACATTTTGTTTTTTTTTTCCCCATTTAACCCTATGGTTATGACTATTTTA
CTTTATGACTTTAGTTTGTATTTGTCCTGTGTGTTTATCTACTGACCGCA
AACAAAAGAAACAACGAGCGACGGCACGCAACTTGTACATATACCACAGA
TACACTTACACTTACGTATATGTATGGTTTATTTTGATGTCGCTGTGAGT
GAGGGCGTTAGCTACTTAATCTGAATCCAAATCAAAATATTGATGCAGCA
ATTAAAAAACCAAAAAAAGTGGCAAATAAGAAACGCAGAAAAAACCATGA
AGAGATTTGGTTCGGTGCTGTCTGAAAACGTATTAGCCATATAAAGTGCA
CAAATCATTTCAGCGTTATATAAAATTAGAAGACGCTATTATTTTTCTGC
CGACTTTGCGCTGGCCATCATCGTGCGTTGTATAACATAAATTTCACGTT
AAATGCAGTAACACACTTTCTTTGTATTCTTATTATTATTTGCGCTTAAA
ATACATAAGTTATCATTTAAATTGCGAAACAAAACGAAATGTGATTTTGT
AAAAACAAAAACTGAAATAAAAATCAAAAAGACCTCGAGATCCGATGTCG
ACTGCCGTCAACTGTCTAAAAAAAAAAAAAAAA

RE18169.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:42:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG12576-RA 2595 CG12576-RA 89..2558 1..2470 12335 99.9 Plus
CG12576.b 2778 CG12576.b 272..2741 1..2470 12335 99.9 Plus
CG12576-RB 2080 CG12576-RB 133..2043 560..2470 9555 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:33:11
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 21870817..21872419 2467..865 8015 100 Minus
chrX 22417052 chrX 21876477..21876864 561..174 1940 100 Minus
chrX 22417052 chrX 21873145..21873450 865..560 1530 100 Minus
chrX 22417052 chrX 21877881..21878053 173..1 850 99.4 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:39:14 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:33:09
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 22474848..22476453 2470..865 8030 100 Minus
X 23542271 X 22480511..22480898 561..174 1940 100 Minus
X 23542271 X 22477179..22477484 865..560 1530 100 Minus
X 23542271 X 22481915..22482087 173..1 850 99.4 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:09:42
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 22459940..22461545 2470..865 8030 100 Minus
X 23527363 X 22465603..22465990 561..174 1940 100 Minus
X 23527363 X 22462271..22462576 865..560 1530 100 Minus
X 23527363 X 22467007..22467179 173..1 850 99.4 Minus
Blast to na_te.dros performed 2019-03-16 22:33:10
Subject Length Description Subject Range Query Range Score Percent Strand
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 1211..1317 1946..1846 132 63.6 Minus
gypsy11 4428 gypsy11 GYPSY11 4428bp 1156..1324 1913..1741 117 54.6 Minus

RE18169.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:33:58 Download gff for RE18169.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 21870817..21872418 866..2467 100 <- Minus
chrX 21873145..21873449 561..865 100 <- Minus
chrX 21876478..21876864 174..560 100 <- Minus
chrX 21877881..21878053 1..173 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:59:21 Download gff for RE18169.complete
Subject Subject Range Query Range Percent Splice Strand
CG12576-RA 1..1110 478..1587 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:08:39 Download gff for RE18169.complete
Subject Subject Range Query Range Percent Splice Strand
CG12576-RA 1..1110 478..1587 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:15:28 Download gff for RE18169.complete
Subject Subject Range Query Range Percent Splice Strand
CG12576-RA 1..1110 478..1587 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:32:55 Download gff for RE18169.complete
Subject Subject Range Query Range Percent Splice Strand
CG12576-RA 1..1110 478..1587 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:40:37 Download gff for RE18169.complete
Subject Subject Range Query Range Percent Splice Strand
CG12576-RA 1..1110 478..1587 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:37:42 Download gff for RE18169.complete
Subject Subject Range Query Range Percent Splice Strand
CG12576-RA 1..2467 1..2467 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:08:39 Download gff for RE18169.complete
Subject Subject Range Query Range Percent Splice Strand
CG12576-RA 1..2467 1..2467 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:15:28 Download gff for RE18169.complete
Subject Subject Range Query Range Percent Splice Strand
CG12576-RA 1..2407 61..2467 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:32:55 Download gff for RE18169.complete
Subject Subject Range Query Range Percent Splice Strand
CG12576-RA 1..2467 1..2467 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:40:37 Download gff for RE18169.complete
Subject Subject Range Query Range Percent Splice Strand
CG12576-RA 1..2407 61..2467 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:33:58 Download gff for RE18169.complete
Subject Subject Range Query Range Percent Splice Strand
X 22474851..22476452 866..2467 100 <- Minus
X 22477179..22477483 561..865 100 <- Minus
X 22480512..22480898 174..560 100 <- Minus
X 22481915..22482087 1..173 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:33:58 Download gff for RE18169.complete
Subject Subject Range Query Range Percent Splice Strand
X 22474851..22476452 866..2467 100 <- Minus
X 22477179..22477483 561..865 100 <- Minus
X 22480512..22480898 174..560 100 <- Minus
X 22481915..22482087 1..173 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:33:58 Download gff for RE18169.complete
Subject Subject Range Query Range Percent Splice Strand
X 22474851..22476452 866..2467 100 <- Minus
X 22477179..22477483 561..865 100 <- Minus
X 22480512..22480898 174..560 100 <- Minus
X 22481915..22482087 1..173 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:15:28 Download gff for RE18169.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 21876687..21878288 866..2467 100 <- Minus
arm_X 21879015..21879319 561..865 100 <- Minus
arm_X 21882348..21882734 174..560 100 <- Minus
arm_X 21883751..21883923 1..173 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:09:53 Download gff for RE18169.complete
Subject Subject Range Query Range Percent Splice Strand
X 22459943..22461544 866..2467 100 <- Minus
X 22462271..22462575 561..865 100 <- Minus
X 22465604..22465990 174..560 100 <- Minus
X 22467007..22467179 1..173 99   Minus

RE18169.hyp Sequence

Translation from 477 to 1586

> RE18169.hyp
MFQVLPRPSRSTFHCIAAAVVTVVLMSWARPLGVLFLGLLGYWIYWTRCS
FRVVPTDELRGKINTWLQRIDDWRHRSPSMFCLASSGCLGTLAVLGHLIS
GSTLVLTILVVSALVSTKYTFKLLKIEHRDFQWSEKLNYNNLEAEAEDEF
LPDVNESNLFVLERASDVATISSPTDANDEDDDDRSDDVPSELLIPDAIP
EIDEQSTDEDDELAPLAPKRQEKLQPQEQPAKESEDMNFRKSHFKRDSSL
STSSSSEESLSKGLQFPDHTTVDATGNPQLRQITAGPDPAGELVALAVKT
QAQALLANSGKLLPSLVTGLVQWGAGGAAAAGASDCTDSNRDRDQQRIVT
ALDSSDESDFEILESDDFK*

RE18169.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:45:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG12576-PE 369 CG12576-PE 1..369 1..369 1897 100 Plus
CG12576-PF 369 CG12576-PF 1..369 1..369 1897 100 Plus
CG12576-PA 369 CG12576-PA 1..369 1..369 1897 100 Plus
CG12576-PB 290 CG12576-PB 1..290 80..369 1463 100 Plus

RE18169.pep Sequence

Translation from 477 to 1586

> RE18169.pep
MFQVLPRPSRSTFHCIAAAVVTVVLMSWARPLGVLFLGLLGYWIYWTRCS
FRVVPTDELRGKINTWLQRIDDWRHRSPSMFCLASSGCLGTLAVLGHLIS
GSTLVLTILVVSALVSTKYTFKLLKIEHRDFQWSEKLNYNNLEAEAEDEF
LPDVNESNLFVLERASDVATISSPTDANDEDDDDRSDDVPSELLIPDAIP
EIDEQSTDEDDELAPLAPKRQEKLQPQEQPAKESEDMNFRKSHFKRDSSL
STSSSSEESLSKGLQFPDHTTVDATGNPQLRQITAGPDPAGELVALAVKT
QAQALLANSGKLLPSLVTGLVQWGAGGAAAAGASDCTDSNRDRDQQRIVT
ALDSSDESDFEILESDDFK*

RE18169.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:03:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21271-PA 378 GF21271-PA 1..378 1..369 1320 78.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:03:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17513-PA 374 GG17513-PA 1..374 1..369 1467 89.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:03:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12326-PA 372 GH12326-PA 1..372 1..369 1009 63.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:12:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG12576-PE 369 CG12576-PE 1..369 1..369 1897 100 Plus
CG12576-PF 369 CG12576-PF 1..369 1..369 1897 100 Plus
CG12576-PA 369 CG12576-PA 1..369 1..369 1897 100 Plus
CG12576-PB 290 CG12576-PB 1..290 80..369 1463 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:03:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14605-PA 373 GI14605-PA 1..373 1..369 1037 62.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:03:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13427-PA 118 GL13427-PA 4..65 5..66 272 71 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:03:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11699-PA 383 GA11699-PA 1..383 1..369 1305 71.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:03:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11722-PA 370 GM11722-PA 1..370 1..369 1554 91.9 Plus
Dsec\GM13263-PA 315 GM13263-PA 1..315 1..369 799 58.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:03:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15485-PA 370 GD15485-PA 1..370 1..369 1590 92.4 Plus
Dsim\GD15028-PA 238 GD15028-PA 1..238 80..369 709 60.7 Plus
Dsim\GD13206-PA 100 GD13206-PA 1..50 80..129 222 90 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:03:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19013-PA 382 GJ19013-PA 1..382 1..369 1152 64.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:03:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16416-PA 378 GK16416-PA 1..378 1..369 1076 64 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:03:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15269-PA 371 GE15269-PA 1..371 1..369 1501 90.6 Plus