BDGP Sequence Production Resources |
Search the DGRC for RE18169
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 181 |
Well: | 69 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG12576-RA |
Protein status: | RE18169.pep: gold |
Preliminary Size: | 1492 |
Sequenced Size: | 2483 |
Gene | Date | Evidence |
---|---|---|
CG12576 | 2001-12-14 | Blastp of sequenced clone |
CG12576 | 2002-01-01 | Sim4 clustering to Release 2 |
CG12576 | 2003-01-01 | Sim4 clustering to Release 3 |
CG12576 | 2008-04-29 | Release 5.5 accounting |
CG12576 | 2008-08-15 | Release 5.9 accounting |
CG12576 | 2008-12-18 | 5.12 accounting |
2483 bp (2483 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071150
> RE18169.complete TGTGATACATTTTGGTATTTGATTTGCGCCGGATGGTATTTTCCTTCGCC GTGCGCGCGGTCACATTCACTGGATGTGTTTTTTTGCGCTGATTGTTGCT CTGGCGCGATCGAATTTGCCTGGAATTCGGGAGTCAACATAATATTTTCG AAAGTCACCAGCTATAGCGAAAATAGTCGCGGATTTTCAACAAAGAGCAA TCATAGTGATGGTATAAAAGAGGGGAAGGACGAAAGCAAAGAGAGCAAAC CGAAAACAGTTACTCTGCCCATGCGCACAGCTGACCCAGAACCTGGCATA ACGGTAAAGTAATTGTGTCGTACAACAAGCGAAACTTGACAGCGAAAGGG AACCGGAAGTCGCCTAAAATCGCGGAGCGGAAAGGAAATCAGTCCGCCAA CCGCGGGAGCTGAAAATCGAAATCACAACCCACAAAAGCGATTCCAAAGT GCTATCTTGGTGCTACTCCCATACAAAATGTTCCAAGTCCTGCCCCGTCC GTCAAGATCCACGTTCCACTGCATAGCGGCAGCCGTTGTCACAGTCGTCC TAATGTCATGGGCCCGACCGCTGGGCGTGCTATTCCTGGGACTACTTGGC TACTGGATCTACTGGACGCGCTGCAGCTTCCGCGTTGTGCCTACGGACGA GCTGCGCGGCAAGATCAACACCTGGCTGCAGAGGATCGACGACTGGCGCC ACCGCAGTCCCAGCATGTTCTGCTTGGCCAGCAGCGGTTGCTTGGGCACC CTCGCAGTGCTCGGTCACCTTATATCCGGATCAACGCTGGTACTGACCAT CCTGGTCGTCTCCGCACTAGTCTCCACCAAGTACACCTTCAAGCTGCTGA AGATCGAGCACAGGGACTTTCAGTGGTCGGAGAAGCTGAACTACAACAAC TTGGAAGCCGAGGCAGAGGATGAGTTCCTGCCGGACGTGAACGAGTCGAA TCTGTTTGTGTTGGAGCGGGCCAGCGATGTGGCCACCATAAGTTCGCCCA CCGATGCGAATGATGAGGACGATGACGATCGCAGCGACGACGTACCGTCG GAGCTCCTCATTCCGGATGCGATACCCGAGATTGACGAGCAATCCACCGA CGAGGACGATGAACTAGCCCCGCTGGCGCCCAAGAGGCAGGAGAAGCTGC AGCCACAGGAGCAGCCGGCCAAGGAGAGCGAGGATATGAACTTCCGAAAG AGTCACTTCAAGCGTGACTCGTCGCTGTCCACATCCTCCTCGTCGGAGGA AAGCCTGTCAAAGGGGCTGCAGTTCCCCGATCACACCACCGTAGATGCCA CTGGCAACCCTCAGTTGCGTCAGATAACCGCTGGCCCGGATCCCGCCGGC GAGCTTGTAGCCCTGGCCGTGAAAACGCAGGCTCAGGCGCTCCTGGCAAA CAGCGGGAAGCTCCTGCCCAGCCTTGTTACCGGCCTGGTGCAATGGGGAG CAGGTGGTGCTGCTGCAGCCGGTGCCAGCGATTGCACGGATTCAAATCGA GATCGTGACCAGCAGCGCATTGTCACCGCCCTGGATTCGTCGGACGAGAG CGATTTTGAGATACTCGAATCGGATGACTTTAAGTAAAGATTGGATCAAT CGGCGATCGGACCGATTTGTCGTATTATAAAGCTATTGTCTTAACATACA TATGCATACACAAATAGAACTCAAAAAATCGACAGACAAACAGACGGCGC CAACGATTGGAGTGGTTCCAATTTCCCTGGTGGAGATCAGTTATATATTT TGCTACACACTAGTGCTATGTATACTTATATACTAAACTAATCATCCTAC AGTTAAGCCAAAAGTTTTCCCCAGTTTTGTTTTTCTTCCTCTTGCTTTGT ACATTTTGTTTTTTTTTTCCCCATTTAACCCTATGGTTATGACTATTTTA CTTTATGACTTTAGTTTGTATTTGTCCTGTGTGTTTATCTACTGACCGCA AACAAAAGAAACAACGAGCGACGGCACGCAACTTGTACATATACCACAGA TACACTTACACTTACGTATATGTATGGTTTATTTTGATGTCGCTGTGAGT GAGGGCGTTAGCTACTTAATCTGAATCCAAATCAAAATATTGATGCAGCA ATTAAAAAACCAAAAAAAGTGGCAAATAAGAAACGCAGAAAAAACCATGA AGAGATTTGGTTCGGTGCTGTCTGAAAACGTATTAGCCATATAAAGTGCA CAAATCATTTCAGCGTTATATAAAATTAGAAGACGCTATTATTTTTCTGC CGACTTTGCGCTGGCCATCATCGTGCGTTGTATAACATAAATTTCACGTT AAATGCAGTAACACACTTTCTTTGTATTCTTATTATTATTTGCGCTTAAA ATACATAAGTTATCATTTAAATTGCGAAACAAAACGAAATGTGATTTTGT AAAAACAAAAACTGAAATAAAAATCAAAAAGACCTCGAGATCCGATGTCG ACTGCCGTCAACTGTCTAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12576-RA | 2595 | CG12576-RA | 89..2558 | 1..2470 | 12335 | 99.9 | Plus |
CG12576.b | 2778 | CG12576.b | 272..2741 | 1..2470 | 12335 | 99.9 | Plus |
CG12576-RB | 2080 | CG12576-RB | 133..2043 | 560..2470 | 9555 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 21870817..21872419 | 2467..865 | 8015 | 100 | Minus |
chrX | 22417052 | chrX | 21876477..21876864 | 561..174 | 1940 | 100 | Minus |
chrX | 22417052 | chrX | 21873145..21873450 | 865..560 | 1530 | 100 | Minus |
chrX | 22417052 | chrX | 21877881..21878053 | 173..1 | 850 | 99.4 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 22474848..22476453 | 2470..865 | 8030 | 100 | Minus |
X | 23542271 | X | 22480511..22480898 | 561..174 | 1940 | 100 | Minus |
X | 23542271 | X | 22477179..22477484 | 865..560 | 1530 | 100 | Minus |
X | 23542271 | X | 22481915..22482087 | 173..1 | 850 | 99.4 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 22459940..22461545 | 2470..865 | 8030 | 100 | Minus |
X | 23527363 | X | 22465603..22465990 | 561..174 | 1940 | 100 | Minus |
X | 23527363 | X | 22462271..22462576 | 865..560 | 1530 | 100 | Minus |
X | 23527363 | X | 22467007..22467179 | 173..1 | 850 | 99.4 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 1211..1317 | 1946..1846 | 132 | 63.6 | Minus |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 1156..1324 | 1913..1741 | 117 | 54.6 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 21870817..21872418 | 866..2467 | 100 | <- | Minus |
chrX | 21873145..21873449 | 561..865 | 100 | <- | Minus |
chrX | 21876478..21876864 | 174..560 | 100 | <- | Minus |
chrX | 21877881..21878053 | 1..173 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12576-RA | 1..1110 | 478..1587 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12576-RA | 1..1110 | 478..1587 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12576-RA | 1..1110 | 478..1587 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12576-RA | 1..1110 | 478..1587 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12576-RA | 1..1110 | 478..1587 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12576-RA | 1..2467 | 1..2467 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12576-RA | 1..2467 | 1..2467 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12576-RA | 1..2407 | 61..2467 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12576-RA | 1..2467 | 1..2467 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12576-RA | 1..2407 | 61..2467 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 22474851..22476452 | 866..2467 | 100 | <- | Minus |
X | 22477179..22477483 | 561..865 | 100 | <- | Minus |
X | 22480512..22480898 | 174..560 | 100 | <- | Minus |
X | 22481915..22482087 | 1..173 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 22474851..22476452 | 866..2467 | 100 | <- | Minus |
X | 22477179..22477483 | 561..865 | 100 | <- | Minus |
X | 22480512..22480898 | 174..560 | 100 | <- | Minus |
X | 22481915..22482087 | 1..173 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 22474851..22476452 | 866..2467 | 100 | <- | Minus |
X | 22477179..22477483 | 561..865 | 100 | <- | Minus |
X | 22480512..22480898 | 174..560 | 100 | <- | Minus |
X | 22481915..22482087 | 1..173 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 21876687..21878288 | 866..2467 | 100 | <- | Minus |
arm_X | 21879015..21879319 | 561..865 | 100 | <- | Minus |
arm_X | 21882348..21882734 | 174..560 | 100 | <- | Minus |
arm_X | 21883751..21883923 | 1..173 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 22459943..22461544 | 866..2467 | 100 | <- | Minus |
X | 22462271..22462575 | 561..865 | 100 | <- | Minus |
X | 22465604..22465990 | 174..560 | 100 | <- | Minus |
X | 22467007..22467179 | 1..173 | 99 | Minus |
Translation from 477 to 1586
> RE18169.hyp MFQVLPRPSRSTFHCIAAAVVTVVLMSWARPLGVLFLGLLGYWIYWTRCS FRVVPTDELRGKINTWLQRIDDWRHRSPSMFCLASSGCLGTLAVLGHLIS GSTLVLTILVVSALVSTKYTFKLLKIEHRDFQWSEKLNYNNLEAEAEDEF LPDVNESNLFVLERASDVATISSPTDANDEDDDDRSDDVPSELLIPDAIP EIDEQSTDEDDELAPLAPKRQEKLQPQEQPAKESEDMNFRKSHFKRDSSL STSSSSEESLSKGLQFPDHTTVDATGNPQLRQITAGPDPAGELVALAVKT QAQALLANSGKLLPSLVTGLVQWGAGGAAAAGASDCTDSNRDRDQQRIVT ALDSSDESDFEILESDDFK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12576-PE | 369 | CG12576-PE | 1..369 | 1..369 | 1897 | 100 | Plus |
CG12576-PF | 369 | CG12576-PF | 1..369 | 1..369 | 1897 | 100 | Plus |
CG12576-PA | 369 | CG12576-PA | 1..369 | 1..369 | 1897 | 100 | Plus |
CG12576-PB | 290 | CG12576-PB | 1..290 | 80..369 | 1463 | 100 | Plus |
Translation from 477 to 1586
> RE18169.pep MFQVLPRPSRSTFHCIAAAVVTVVLMSWARPLGVLFLGLLGYWIYWTRCS FRVVPTDELRGKINTWLQRIDDWRHRSPSMFCLASSGCLGTLAVLGHLIS GSTLVLTILVVSALVSTKYTFKLLKIEHRDFQWSEKLNYNNLEAEAEDEF LPDVNESNLFVLERASDVATISSPTDANDEDDDDRSDDVPSELLIPDAIP EIDEQSTDEDDELAPLAPKRQEKLQPQEQPAKESEDMNFRKSHFKRDSSL STSSSSEESLSKGLQFPDHTTVDATGNPQLRQITAGPDPAGELVALAVKT QAQALLANSGKLLPSLVTGLVQWGAGGAAAAGASDCTDSNRDRDQQRIVT ALDSSDESDFEILESDDFK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF21271-PA | 378 | GF21271-PA | 1..378 | 1..369 | 1320 | 78.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17513-PA | 374 | GG17513-PA | 1..374 | 1..369 | 1467 | 89.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH12326-PA | 372 | GH12326-PA | 1..372 | 1..369 | 1009 | 63.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12576-PE | 369 | CG12576-PE | 1..369 | 1..369 | 1897 | 100 | Plus |
CG12576-PF | 369 | CG12576-PF | 1..369 | 1..369 | 1897 | 100 | Plus |
CG12576-PA | 369 | CG12576-PA | 1..369 | 1..369 | 1897 | 100 | Plus |
CG12576-PB | 290 | CG12576-PB | 1..290 | 80..369 | 1463 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI14605-PA | 373 | GI14605-PA | 1..373 | 1..369 | 1037 | 62.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL13427-PA | 118 | GL13427-PA | 4..65 | 5..66 | 272 | 71 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA11699-PA | 383 | GA11699-PA | 1..383 | 1..369 | 1305 | 71.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM11722-PA | 370 | GM11722-PA | 1..370 | 1..369 | 1554 | 91.9 | Plus |
Dsec\GM13263-PA | 315 | GM13263-PA | 1..315 | 1..369 | 799 | 58.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD15485-PA | 370 | GD15485-PA | 1..370 | 1..369 | 1590 | 92.4 | Plus |
Dsim\GD15028-PA | 238 | GD15028-PA | 1..238 | 80..369 | 709 | 60.7 | Plus |
Dsim\GD13206-PA | 100 | GD13206-PA | 1..50 | 80..129 | 222 | 90 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ19013-PA | 382 | GJ19013-PA | 1..382 | 1..369 | 1152 | 64.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK16416-PA | 378 | GK16416-PA | 1..378 | 1..369 | 1076 | 64 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE15269-PA | 371 | GE15269-PA | 1..371 | 1..369 | 1501 | 90.6 | Plus |