Clone RE18318 Report

Search the DGRC for RE18318

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:183
Well:18
Vector:pFlc-1
Associated Gene/TranscriptMctp-RB
Protein status:RE18318.pep: gold
Preliminary Size:2971
Sequenced Size:2824

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG33146 2001-12-17 Blastp of sequenced clone
CG15078 2002-01-01 Sim4 clustering to Release 2
CG33146 2003-01-01 Sim4 clustering to Release 3
Mctp 2008-04-29 Release 5.5 accounting
Mctp 2008-08-15 Release 5.9 accounting
Mctp 2008-12-18 5.12 accounting

Clone Sequence Records

RE18318.complete Sequence

2824 bp (2824 high quality bases) assembled on 2001-12-17

GenBank Submission: AY071153

> RE18318.complete
ACCGTTGGAGCTTCGAAAGCGAAGTGCGGCTTTTGGGTTTTGTATTGGGG
CCTGTGTAATTTGCTGTCTGCATTAGTTGGGGCTCTCGAGCGCGGATCAT
GTTGGGCAACAGTTGGCCCGGTTGCAAGCGGGCTCCTCGCATGGTGCTCA
AACATGTGAGGCGGCAGCACGAGGAGTTGCGGGAGCAGCTGGAGCAGGGA
TGCGACGATCTCATGGAGGTGGCCGAGTCTTATTTTCCGGATGTCTTGCA
GCATTTCCAGCGCAACTCGAAACTGGCTGAGTCATCGAAGCGATTGAAGT
CACAGATCTGGAGCTCAGTGGTTACCATATTGCTGGTTAAAGCCAAGGAT
TTGCCCTTAGCTGAAGATGGCAGCAAGCTGAATGATACTCACTTCAAATT
CAGATTGGGCAATGAGAAGTACAAGAGCAAGTCTTCCTGGACGGAACGCT
GGCTGGAGCAGTTCGACTTGCACCTGTTTGATGAAGATCAAAACCTGGAG
ATCGCACTTTGGAACCGGAACACCCTCTATGGCAAAGCCATTATTGACCT
CAGCGTTTTTCAGCGCGAAAACACGCATGGCATTTGGAAACCTCTGGAAG
ATTGCCCTGGTGAGGTCCACCTTATGCTCACTATAAGTGGAACCACTGCC
TTGGAGACGATCAGCGATCTGAAGGCCTTCAAGGAGGATCCTCGAGAGGC
TCAATTGCTAAGGGAAAGATATAAATTCCTAAGATGCCTCCAAAACCTCC
GCGATGTGGGTCACCTAACTGTAAAGGTCTTTGGAGCCACTGGACTGGCT
GCAGCGGATATAGGTGGAAAATCCGATCCTTTTTGTGTATTGGAACTGGG
TAACGCCCGACTGCAAACCCAAACTGAGTATAAAACACTCACTCCTAATT
GGAATAAGATATTTACTTTCAATGTTAAAGACATCACGCAGGTCCTGGAG
ATCACCGTTTTCGATGAGGATCGCGACCATCGCGTAGAGTTCCTGGGCAA
GCTAGTCATTCCCCTCCTAAGGATCAAAAGTGGAGTCAAGCGATGGTATA
CGCTGAAGGACAAGAATCTCTGTGTGCGGGCCAAAGGAAACTCACCGCAA
ATTCAGCTGGAACTGACGGTAGTCTGGAGCGAGATCCGTGCCGTGTGTCG
AGCCCTGCAGCCCAAGGAGGAAAAGCTCATCCAGCAGGAGGCCAAGTTCA
AGCGACAGCTCTTCCTGCGCAACGTCAATAGACTCAAGGAGATAATCATG
GATATCCTAGATGCAGCGCGCTATGTCCAGAGCTGTTTCGAGTGGGAATC
TCCTGTGCGATCCAGCATAGCTTTCGTCTTTTGGATAGTCGCCTGTGTCT
ACGGCGATCTGGAGACAGTACCTCTAGTTCTACTGCTCATCATACTTAAA
AACTGGCTGGTTCGCCTTATAACGGGCACCACAGATGCAGCTGCTCACTA
CGACTATGAGTACGATGAAGATGATGATGATGACAAGGAGAAGGAGGAAA
AGAAGTCCATCAAGGAGAGATTACAGGCCATTCAAGAAGTCTCCCAAACG
GTACAGAATACCATCGGCTACCTGGCTTCTTTAGGCGAGAGCACCATTAA
CACATTCAACTTTTCCGTCCCCGAACTGACCTGGCTGGCTGTGGTTTTGC
TATTGGGCGCCATTCTGGTCTTGCATTTTGTCCCGCTCCGCTGGCTGCTG
CTCTTTTGGGGCCTGATGAAGTTCTCCAGACGTTTGCTGAGACCCAATAC
CATTCCCAACAACGAGCTATTGGACTTCCTCTCGCGAGTGCCAGATAATG
AGGAGATTAATCAATATCGAGAGCTGCCACCATCGGCACCCACCGATCAG
ACGCGCAACAATCCCAAGAAGAAACTGAAAGGATCATAGTCCATAACCAG
CGCTGATGCGGCAATGGCGTCCCTTTCGCCGCTGCAGTCCAGCGCACTAG
GAGGAGCAGCAGGAGGAAGCGGATCGGGATCCGGATACGGCGGAAGGCAG
CAGCAGTTGATGCAGCGCTTCCGGGCCAACACCAGCCAGTTGAAGCACAA
GTTTGGCCAGGCCAAGAGCCTCAGTCTGAGCCATAGCGAATTCAATTAGA
CACCAAAGTTAGTTAGCTAGTTAAGAATCGAAGTCAACCAGTTCCACCCA
TAGAAGGAAACAACACACGCAATTCACCTTGACTCAATTATGCAGCACAA
AATTGCTTTACTTATTTTAATATAATTATATATATATATATACACAGAAA
ATGAGAATATTAATGTAAATGTGCGCAGAACTCAAACTATTTACACAAAG
CGATTATGTACATACACAATGATAGCGGATATAAATAGGAATCTATTGAA
ACATTGCATGTACCTAAGGTAACCTCTCTCAAAGATCTATTCGAATATTT
ACCAAAACTCAAATTGCTAACTACCAGATTCCTTTTTGCGCGAATCCAAA
TGCGATTAATTATTTATTGTGTATTTCAATTTGTGATATTTTCAAAGAAT
TTTGCAACTAGGCTTACTACTTAATGTGACTTAAACCACGGAAGCTCCGT
ACCGCACAGAAGTTTCCCCCAAACTCCATTTACAATTTACCACTCGATTG
CACTCGACTCGTTTAAGGACGCTTTTTCATTATATACCTTTACATATATA
CCTAATTAAGCCTTATCCTAACCAAATTGATTGTAATTATTTCACTCGGA
AAGATTGTTCAAAACATTTTCTAAAACATATAATTATTAACTTTGTCTAG
GATAATCAGCTCTTAAAAGGCCCCGGCCCAGCTATACAAATAAATATAAA
TTAATTTCTATGTAAAAAAAAAAA

RE18318.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:35:58
Subject Length Description Subject Range Query Range Score Percent Strand
Mctp-RB 2945 Mctp-RB 10..2824 1..2815 14075 100 Plus
Mctp.c 4120 Mctp.c 1435..3999 251..2815 12825 100 Plus
Mctp.b 3851 Mctp.b 1166..3730 251..2815 12825 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 03:12:52
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 14660798..14661803 1809..2813 4890 99.3 Plus
chr2R 21145070 chr2R 14659084..14659604 399..919 2560 99.4 Plus
chr2R 21145070 chr2R 14658623..14659025 1..403 1970 99.3 Plus
chr2R 21145070 chr2R 14659674..14660034 920..1280 1745 98.9 Plus
chr2R 21145070 chr2R 14660533..14660740 1601..1808 1025 99.5 Plus
chr2R 21145070 chr2R 14660266..14660467 1396..1597 995 99.5 Plus
chr2R 21145070 chr2R 14660093..14660212 1280..1399 585 99.2 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:39:22 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 03:12:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18773663..18774669 1809..2815 5035 100 Plus
2R 25286936 2R 18771950..18772470 399..919 2605 100 Plus
2R 25286936 2R 18771489..18771891 1..403 2015 100 Plus
2R 25286936 2R 18772539..18772899 920..1280 1805 100 Plus
2R 25286936 2R 18773398..18773605 1601..1808 1040 100 Plus
2R 25286936 2R 18773131..18773335 1396..1600 1010 99.5 Plus
2R 25286936 2R 18772958..18773077 1280..1399 600 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:03:35
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 18774862..18775868 1809..2815 5035 100 Plus
2R 25260384 2R 18773149..18773669 399..919 2605 100 Plus
2R 25260384 2R 18772688..18773090 1..403 2015 100 Plus
2R 25260384 2R 18773738..18774098 920..1280 1805 100 Plus
2R 25260384 2R 18774597..18774804 1601..1808 1040 100 Plus
2R 25260384 2R 18774330..18774534 1396..1600 1010 99.5 Plus
2R 25260384 2R 18774157..18774276 1280..1399 600 100 Plus
Blast to na_te.dros performed 2019-03-16 03:12:50
Subject Length Description Subject Range Query Range Score Percent Strand
17.6 7439 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). 6689..6813 2161..2289 122 57.4 Plus

RE18318.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:13:54 Download gff for RE18318.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 14658623..14659025 1..403 99 -> Plus
chr2R 14659089..14659604 404..919 99 -> Plus
chr2R 14659674..14660033 920..1279 98 -> Plus
chr2R 14660093..14660212 1280..1399 99 -> Plus
chr2R 14660270..14660470 1400..1600 99 -> Plus
chr2R 14660533..14660740 1601..1808 99 -> Plus
chr2R 14660798..14661803 1809..2813 96   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:59:29 Download gff for RE18318.complete
Subject Subject Range Query Range Percent Splice Strand
Mctp-RB 1..1791 99..1889 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:58:48 Download gff for RE18318.complete
Subject Subject Range Query Range Percent Splice Strand
Mctp-RB 1..1791 99..1889 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:43:14 Download gff for RE18318.complete
Subject Subject Range Query Range Percent Splice Strand
Mctp-RD 1101..2949 251..2099 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:23:32 Download gff for RE18318.complete
Subject Subject Range Query Range Percent Splice Strand
Mctp-RB 1..1791 99..1889 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:33:28 Download gff for RE18318.complete
Subject Subject Range Query Range Percent Splice Strand
Mctp-RD 1101..2949 251..2099 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:24:05 Download gff for RE18318.complete
Subject Subject Range Query Range Percent Splice Strand
Mctp-RB 1..2813 1..2813 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:58:48 Download gff for RE18318.complete
Subject Subject Range Query Range Percent Splice Strand
Mctp-RB 1..2813 1..2813 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:43:14 Download gff for RE18318.complete
Subject Subject Range Query Range Percent Splice Strand
Mctp-RB 12..2824 1..2813 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:23:33 Download gff for RE18318.complete
Subject Subject Range Query Range Percent Splice Strand
Mctp-RB 1..2813 1..2813 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:33:28 Download gff for RE18318.complete
Subject Subject Range Query Range Percent Splice Strand
Mctp-RB 12..2824 1..2813 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:13:54 Download gff for RE18318.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18772958..18773077 1280..1399 100 -> Plus
2R 18773135..18773335 1400..1600 100 -> Plus
2R 18773398..18773605 1601..1808 100 -> Plus
2R 18771489..18771891 1..403 100 -> Plus
2R 18771955..18772470 404..919 100 -> Plus
2R 18772539..18772898 920..1279 100 -> Plus
2R 18773663..18774667 1809..2813 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:13:54 Download gff for RE18318.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18772958..18773077 1280..1399 100 -> Plus
2R 18773135..18773335 1400..1600 100 -> Plus
2R 18773398..18773605 1601..1808 100 -> Plus
2R 18771489..18771891 1..403 100 -> Plus
2R 18771955..18772470 404..919 100 -> Plus
2R 18772539..18772898 920..1279 100 -> Plus
2R 18773663..18774667 1809..2813 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:13:54 Download gff for RE18318.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18772958..18773077 1280..1399 100 -> Plus
2R 18773135..18773335 1400..1600 100 -> Plus
2R 18773398..18773605 1601..1808 100 -> Plus
2R 18771489..18771891 1..403 100 -> Plus
2R 18771955..18772470 404..919 100 -> Plus
2R 18772539..18772898 920..1279 100 -> Plus
2R 18773663..18774667 1809..2813 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:43:14 Download gff for RE18318.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14658994..14659396 1..403 100 -> Plus
arm_2R 14659460..14659975 404..919 100 -> Plus
arm_2R 14660044..14660403 920..1279 100 -> Plus
arm_2R 14660463..14660582 1280..1399 100 -> Plus
arm_2R 14660640..14660840 1400..1600 100 -> Plus
arm_2R 14660903..14661110 1601..1808 100 -> Plus
arm_2R 14661168..14662172 1809..2813 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:58:37 Download gff for RE18318.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18774157..18774276 1280..1399 100 -> Plus
2R 18774334..18774534 1400..1600 100 -> Plus
2R 18774597..18774804 1601..1808 100 -> Plus
2R 18772688..18773090 1..403 100 -> Plus
2R 18773154..18773669 404..919 100 -> Plus
2R 18773738..18774097 920..1279 100 -> Plus
2R 18774862..18775866 1809..2813 100   Plus

RE18318.pep Sequence

Translation from 98 to 1888

> RE18318.pep
MLGNSWPGCKRAPRMVLKHVRRQHEELREQLEQGCDDLMEVAESYFPDVL
QHFQRNSKLAESSKRLKSQIWSSVVTILLVKAKDLPLAEDGSKLNDTHFK
FRLGNEKYKSKSSWTERWLEQFDLHLFDEDQNLEIALWNRNTLYGKAIID
LSVFQRENTHGIWKPLEDCPGEVHLMLTISGTTALETISDLKAFKEDPRE
AQLLRERYKFLRCLQNLRDVGHLTVKVFGATGLAAADIGGKSDPFCVLEL
GNARLQTQTEYKTLTPNWNKIFTFNVKDITQVLEITVFDEDRDHRVEFLG
KLVIPLLRIKSGVKRWYTLKDKNLCVRAKGNSPQIQLELTVVWSEIRAVC
RALQPKEEKLIQQEAKFKRQLFLRNVNRLKEIIMDILDAARYVQSCFEWE
SPVRSSIAFVFWIVACVYGDLETVPLVLLLIILKNWLVRLITGTTDAAAH
YDYEYDEDDDDDKEKEEKKSIKERLQAIQEVSQTVQNTIGYLASLGESTI
NTFNFSVPELTWLAVVLLLGAILVLHFVPLRWLLLFWGLMKFSRRLLRPN
TIPNNELLDFLSRVPDNEEINQYRELPPSAPTDQTRNNPKKKLKGS*

RE18318.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:07:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11116-PA 597 GF11116-PA 1..597 1..596 2823 94.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:07:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21924-PA 596 GG21924-PA 1..596 1..596 3143 99.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:07:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22086-PA 597 GH22086-PA 9..597 14..596 2581 89.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:29:12
Subject Length Description Subject Range Query Range Score Percent Strand
Mctp-PB 596 CG15078-PB 1..596 1..596 3108 100 Plus
Mctp-PG 912 CG15078-PG 364..912 48..596 2832 99.5 Plus
Mctp-PF 893 CG15078-PF 345..893 48..596 2832 99.5 Plus
Mctp-PE 954 CG15078-PE 406..954 48..596 2832 99.5 Plus
Mctp-PD 982 CG15078-PD 364..912 48..596 2832 99.5 Plus
Mctp-PA 893 CG15078-PA 345..893 48..596 2832 99.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:07:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19221-PA 583 GI19221-PA 1..583 15..596 2612 91.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:07:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10771-PA 586 GL10771-PA 1..586 1..596 2780 94.3 Plus
Dper\GL11879-PA 1027 GL11879-PA 61..216 212..355 158 31.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:07:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17320-PA 586 GA17320-PA 1..586 1..596 2775 94.1 Plus
Dpse\GA16742-PA 1027 GA16742-PA 61..216 212..355 158 31.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:07:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21916-PA 596 GM21916-PA 1..596 1..596 3135 98.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:07:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11410-PA 596 GD11410-PA 1..596 1..596 3154 99.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:07:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20296-PA 585 GJ20296-PA 3..585 6..596 2615 90.6 Plus
Dvir\GJ12273-PA 962 GJ12273-PA 50..205 212..355 155 31.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:07:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20924-PA 597 GK20924-PA 1..597 1..596 2873 91 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:07:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11998-PA 948 GE11998-PA 388..948 36..596 2929 98.4 Plus

RE18318.hyp Sequence

Translation from 98 to 1888

> RE18318.hyp
MLGNSWPGCKRAPRMVLKHVRRQHEELREQLEQGCDDLMEVAESYFPDVL
QHFQRNSKLAESSKRLKSQIWSSVVTILLVKAKDLPLAEDGSKLNDTHFK
FRLGNEKYKSKSSWTERWLEQFDLHLFDEDQNLEIALWNRNTLYGKAIID
LSVFQRENTHGIWKPLEDCPGEVHLMLTISGTTALETISDLKAFKEDPRE
AQLLRERYKFLRCLQNLRDVGHLTVKVFGATGLAAADIGGKSDPFCVLEL
GNARLQTQTEYKTLTPNWNKIFTFNVKDITQVLEITVFDEDRDHRVEFLG
KLVIPLLRIKSGVKRWYTLKDKNLCVRAKGNSPQIQLELTVVWSEIRAVC
RALQPKEEKLIQQEAKFKRQLFLRNVNRLKEIIMDILDAARYVQSCFEWE
SPVRSSIAFVFWIVACVYGDLETVPLVLLLIILKNWLVRLITGTTDAAAH
YDYEYDEDDDDDKEKEEKKSIKERLQAIQEVSQTVQNTIGYLASLGESTI
NTFNFSVPELTWLAVVLLLGAILVLHFVPLRWLLLFWGLMKFSRRLLRPN
TIPNNELLDFLSRVPDNEEINQYRELPPSAPTDQTRNNPKKKLKGS*

RE18318.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:38:21
Subject Length Description Subject Range Query Range Score Percent Strand
Mctp-PB 596 CG15078-PB 1..596 1..596 3108 100 Plus
Mctp-PG 912 CG15078-PG 364..912 48..596 2832 99.5 Plus
Mctp-PF 893 CG15078-PF 345..893 48..596 2832 99.5 Plus
Mctp-PE 954 CG15078-PE 406..954 48..596 2832 99.5 Plus
Mctp-PD 982 CG15078-PD 364..912 48..596 2832 99.5 Plus