BDGP Sequence Production Resources |
Search the DGRC for RE18318
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 183 |
Well: | 18 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Mctp-RB |
Protein status: | RE18318.pep: gold |
Preliminary Size: | 2971 |
Sequenced Size: | 2824 |
Gene | Date | Evidence |
---|---|---|
CG33146 | 2001-12-17 | Blastp of sequenced clone |
CG15078 | 2002-01-01 | Sim4 clustering to Release 2 |
CG33146 | 2003-01-01 | Sim4 clustering to Release 3 |
Mctp | 2008-04-29 | Release 5.5 accounting |
Mctp | 2008-08-15 | Release 5.9 accounting |
Mctp | 2008-12-18 | 5.12 accounting |
2824 bp (2824 high quality bases) assembled on 2001-12-17
GenBank Submission: AY071153
> RE18318.complete ACCGTTGGAGCTTCGAAAGCGAAGTGCGGCTTTTGGGTTTTGTATTGGGG CCTGTGTAATTTGCTGTCTGCATTAGTTGGGGCTCTCGAGCGCGGATCAT GTTGGGCAACAGTTGGCCCGGTTGCAAGCGGGCTCCTCGCATGGTGCTCA AACATGTGAGGCGGCAGCACGAGGAGTTGCGGGAGCAGCTGGAGCAGGGA TGCGACGATCTCATGGAGGTGGCCGAGTCTTATTTTCCGGATGTCTTGCA GCATTTCCAGCGCAACTCGAAACTGGCTGAGTCATCGAAGCGATTGAAGT CACAGATCTGGAGCTCAGTGGTTACCATATTGCTGGTTAAAGCCAAGGAT TTGCCCTTAGCTGAAGATGGCAGCAAGCTGAATGATACTCACTTCAAATT CAGATTGGGCAATGAGAAGTACAAGAGCAAGTCTTCCTGGACGGAACGCT GGCTGGAGCAGTTCGACTTGCACCTGTTTGATGAAGATCAAAACCTGGAG ATCGCACTTTGGAACCGGAACACCCTCTATGGCAAAGCCATTATTGACCT CAGCGTTTTTCAGCGCGAAAACACGCATGGCATTTGGAAACCTCTGGAAG ATTGCCCTGGTGAGGTCCACCTTATGCTCACTATAAGTGGAACCACTGCC TTGGAGACGATCAGCGATCTGAAGGCCTTCAAGGAGGATCCTCGAGAGGC TCAATTGCTAAGGGAAAGATATAAATTCCTAAGATGCCTCCAAAACCTCC GCGATGTGGGTCACCTAACTGTAAAGGTCTTTGGAGCCACTGGACTGGCT GCAGCGGATATAGGTGGAAAATCCGATCCTTTTTGTGTATTGGAACTGGG TAACGCCCGACTGCAAACCCAAACTGAGTATAAAACACTCACTCCTAATT GGAATAAGATATTTACTTTCAATGTTAAAGACATCACGCAGGTCCTGGAG ATCACCGTTTTCGATGAGGATCGCGACCATCGCGTAGAGTTCCTGGGCAA GCTAGTCATTCCCCTCCTAAGGATCAAAAGTGGAGTCAAGCGATGGTATA CGCTGAAGGACAAGAATCTCTGTGTGCGGGCCAAAGGAAACTCACCGCAA ATTCAGCTGGAACTGACGGTAGTCTGGAGCGAGATCCGTGCCGTGTGTCG AGCCCTGCAGCCCAAGGAGGAAAAGCTCATCCAGCAGGAGGCCAAGTTCA AGCGACAGCTCTTCCTGCGCAACGTCAATAGACTCAAGGAGATAATCATG GATATCCTAGATGCAGCGCGCTATGTCCAGAGCTGTTTCGAGTGGGAATC TCCTGTGCGATCCAGCATAGCTTTCGTCTTTTGGATAGTCGCCTGTGTCT ACGGCGATCTGGAGACAGTACCTCTAGTTCTACTGCTCATCATACTTAAA AACTGGCTGGTTCGCCTTATAACGGGCACCACAGATGCAGCTGCTCACTA CGACTATGAGTACGATGAAGATGATGATGATGACAAGGAGAAGGAGGAAA AGAAGTCCATCAAGGAGAGATTACAGGCCATTCAAGAAGTCTCCCAAACG GTACAGAATACCATCGGCTACCTGGCTTCTTTAGGCGAGAGCACCATTAA CACATTCAACTTTTCCGTCCCCGAACTGACCTGGCTGGCTGTGGTTTTGC TATTGGGCGCCATTCTGGTCTTGCATTTTGTCCCGCTCCGCTGGCTGCTG CTCTTTTGGGGCCTGATGAAGTTCTCCAGACGTTTGCTGAGACCCAATAC CATTCCCAACAACGAGCTATTGGACTTCCTCTCGCGAGTGCCAGATAATG AGGAGATTAATCAATATCGAGAGCTGCCACCATCGGCACCCACCGATCAG ACGCGCAACAATCCCAAGAAGAAACTGAAAGGATCATAGTCCATAACCAG CGCTGATGCGGCAATGGCGTCCCTTTCGCCGCTGCAGTCCAGCGCACTAG GAGGAGCAGCAGGAGGAAGCGGATCGGGATCCGGATACGGCGGAAGGCAG CAGCAGTTGATGCAGCGCTTCCGGGCCAACACCAGCCAGTTGAAGCACAA GTTTGGCCAGGCCAAGAGCCTCAGTCTGAGCCATAGCGAATTCAATTAGA CACCAAAGTTAGTTAGCTAGTTAAGAATCGAAGTCAACCAGTTCCACCCA TAGAAGGAAACAACACACGCAATTCACCTTGACTCAATTATGCAGCACAA AATTGCTTTACTTATTTTAATATAATTATATATATATATATACACAGAAA ATGAGAATATTAATGTAAATGTGCGCAGAACTCAAACTATTTACACAAAG CGATTATGTACATACACAATGATAGCGGATATAAATAGGAATCTATTGAA ACATTGCATGTACCTAAGGTAACCTCTCTCAAAGATCTATTCGAATATTT ACCAAAACTCAAATTGCTAACTACCAGATTCCTTTTTGCGCGAATCCAAA TGCGATTAATTATTTATTGTGTATTTCAATTTGTGATATTTTCAAAGAAT TTTGCAACTAGGCTTACTACTTAATGTGACTTAAACCACGGAAGCTCCGT ACCGCACAGAAGTTTCCCCCAAACTCCATTTACAATTTACCACTCGATTG CACTCGACTCGTTTAAGGACGCTTTTTCATTATATACCTTTACATATATA CCTAATTAAGCCTTATCCTAACCAAATTGATTGTAATTATTTCACTCGGA AAGATTGTTCAAAACATTTTCTAAAACATATAATTATTAACTTTGTCTAG GATAATCAGCTCTTAAAAGGCCCCGGCCCAGCTATACAAATAAATATAAA TTAATTTCTATGTAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 14660798..14661803 | 1809..2813 | 4890 | 99.3 | Plus |
chr2R | 21145070 | chr2R | 14659084..14659604 | 399..919 | 2560 | 99.4 | Plus |
chr2R | 21145070 | chr2R | 14658623..14659025 | 1..403 | 1970 | 99.3 | Plus |
chr2R | 21145070 | chr2R | 14659674..14660034 | 920..1280 | 1745 | 98.9 | Plus |
chr2R | 21145070 | chr2R | 14660533..14660740 | 1601..1808 | 1025 | 99.5 | Plus |
chr2R | 21145070 | chr2R | 14660266..14660467 | 1396..1597 | 995 | 99.5 | Plus |
chr2R | 21145070 | chr2R | 14660093..14660212 | 1280..1399 | 585 | 99.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 18773663..18774669 | 1809..2815 | 5035 | 100 | Plus |
2R | 25286936 | 2R | 18771950..18772470 | 399..919 | 2605 | 100 | Plus |
2R | 25286936 | 2R | 18771489..18771891 | 1..403 | 2015 | 100 | Plus |
2R | 25286936 | 2R | 18772539..18772899 | 920..1280 | 1805 | 100 | Plus |
2R | 25286936 | 2R | 18773398..18773605 | 1601..1808 | 1040 | 100 | Plus |
2R | 25286936 | 2R | 18773131..18773335 | 1396..1600 | 1010 | 99.5 | Plus |
2R | 25286936 | 2R | 18772958..18773077 | 1280..1399 | 600 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 18774862..18775868 | 1809..2815 | 5035 | 100 | Plus |
2R | 25260384 | 2R | 18773149..18773669 | 399..919 | 2605 | 100 | Plus |
2R | 25260384 | 2R | 18772688..18773090 | 1..403 | 2015 | 100 | Plus |
2R | 25260384 | 2R | 18773738..18774098 | 920..1280 | 1805 | 100 | Plus |
2R | 25260384 | 2R | 18774597..18774804 | 1601..1808 | 1040 | 100 | Plus |
2R | 25260384 | 2R | 18774330..18774534 | 1396..1600 | 1010 | 99.5 | Plus |
2R | 25260384 | 2R | 18774157..18774276 | 1280..1399 | 600 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
17.6 | 7439 | 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). | 6689..6813 | 2161..2289 | 122 | 57.4 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 14658623..14659025 | 1..403 | 99 | -> | Plus |
chr2R | 14659089..14659604 | 404..919 | 99 | -> | Plus |
chr2R | 14659674..14660033 | 920..1279 | 98 | -> | Plus |
chr2R | 14660093..14660212 | 1280..1399 | 99 | -> | Plus |
chr2R | 14660270..14660470 | 1400..1600 | 99 | -> | Plus |
chr2R | 14660533..14660740 | 1601..1808 | 99 | -> | Plus |
chr2R | 14660798..14661803 | 1809..2813 | 96 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mctp-RB | 1..1791 | 99..1889 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mctp-RB | 1..1791 | 99..1889 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mctp-RD | 1101..2949 | 251..2099 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mctp-RB | 1..1791 | 99..1889 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mctp-RD | 1101..2949 | 251..2099 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mctp-RB | 1..2813 | 1..2813 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mctp-RB | 1..2813 | 1..2813 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mctp-RB | 12..2824 | 1..2813 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mctp-RB | 1..2813 | 1..2813 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mctp-RB | 12..2824 | 1..2813 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 18772958..18773077 | 1280..1399 | 100 | -> | Plus |
2R | 18773135..18773335 | 1400..1600 | 100 | -> | Plus |
2R | 18773398..18773605 | 1601..1808 | 100 | -> | Plus |
2R | 18771489..18771891 | 1..403 | 100 | -> | Plus |
2R | 18771955..18772470 | 404..919 | 100 | -> | Plus |
2R | 18772539..18772898 | 920..1279 | 100 | -> | Plus |
2R | 18773663..18774667 | 1809..2813 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 18772958..18773077 | 1280..1399 | 100 | -> | Plus |
2R | 18773135..18773335 | 1400..1600 | 100 | -> | Plus |
2R | 18773398..18773605 | 1601..1808 | 100 | -> | Plus |
2R | 18771489..18771891 | 1..403 | 100 | -> | Plus |
2R | 18771955..18772470 | 404..919 | 100 | -> | Plus |
2R | 18772539..18772898 | 920..1279 | 100 | -> | Plus |
2R | 18773663..18774667 | 1809..2813 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 18772958..18773077 | 1280..1399 | 100 | -> | Plus |
2R | 18773135..18773335 | 1400..1600 | 100 | -> | Plus |
2R | 18773398..18773605 | 1601..1808 | 100 | -> | Plus |
2R | 18771489..18771891 | 1..403 | 100 | -> | Plus |
2R | 18771955..18772470 | 404..919 | 100 | -> | Plus |
2R | 18772539..18772898 | 920..1279 | 100 | -> | Plus |
2R | 18773663..18774667 | 1809..2813 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 14658994..14659396 | 1..403 | 100 | -> | Plus |
arm_2R | 14659460..14659975 | 404..919 | 100 | -> | Plus |
arm_2R | 14660044..14660403 | 920..1279 | 100 | -> | Plus |
arm_2R | 14660463..14660582 | 1280..1399 | 100 | -> | Plus |
arm_2R | 14660640..14660840 | 1400..1600 | 100 | -> | Plus |
arm_2R | 14660903..14661110 | 1601..1808 | 100 | -> | Plus |
arm_2R | 14661168..14662172 | 1809..2813 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 18774157..18774276 | 1280..1399 | 100 | -> | Plus |
2R | 18774334..18774534 | 1400..1600 | 100 | -> | Plus |
2R | 18774597..18774804 | 1601..1808 | 100 | -> | Plus |
2R | 18772688..18773090 | 1..403 | 100 | -> | Plus |
2R | 18773154..18773669 | 404..919 | 100 | -> | Plus |
2R | 18773738..18774097 | 920..1279 | 100 | -> | Plus |
2R | 18774862..18775866 | 1809..2813 | 100 | Plus |
Translation from 98 to 1888
> RE18318.pep MLGNSWPGCKRAPRMVLKHVRRQHEELREQLEQGCDDLMEVAESYFPDVL QHFQRNSKLAESSKRLKSQIWSSVVTILLVKAKDLPLAEDGSKLNDTHFK FRLGNEKYKSKSSWTERWLEQFDLHLFDEDQNLEIALWNRNTLYGKAIID LSVFQRENTHGIWKPLEDCPGEVHLMLTISGTTALETISDLKAFKEDPRE AQLLRERYKFLRCLQNLRDVGHLTVKVFGATGLAAADIGGKSDPFCVLEL GNARLQTQTEYKTLTPNWNKIFTFNVKDITQVLEITVFDEDRDHRVEFLG KLVIPLLRIKSGVKRWYTLKDKNLCVRAKGNSPQIQLELTVVWSEIRAVC RALQPKEEKLIQQEAKFKRQLFLRNVNRLKEIIMDILDAARYVQSCFEWE SPVRSSIAFVFWIVACVYGDLETVPLVLLLIILKNWLVRLITGTTDAAAH YDYEYDEDDDDDKEKEEKKSIKERLQAIQEVSQTVQNTIGYLASLGESTI NTFNFSVPELTWLAVVLLLGAILVLHFVPLRWLLLFWGLMKFSRRLLRPN TIPNNELLDFLSRVPDNEEINQYRELPPSAPTDQTRNNPKKKLKGS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11116-PA | 597 | GF11116-PA | 1..597 | 1..596 | 2823 | 94.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG21924-PA | 596 | GG21924-PA | 1..596 | 1..596 | 3143 | 99.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH22086-PA | 597 | GH22086-PA | 9..597 | 14..596 | 2581 | 89.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Mctp-PB | 596 | CG15078-PB | 1..596 | 1..596 | 3108 | 100 | Plus |
Mctp-PG | 912 | CG15078-PG | 364..912 | 48..596 | 2832 | 99.5 | Plus |
Mctp-PF | 893 | CG15078-PF | 345..893 | 48..596 | 2832 | 99.5 | Plus |
Mctp-PE | 954 | CG15078-PE | 406..954 | 48..596 | 2832 | 99.5 | Plus |
Mctp-PD | 982 | CG15078-PD | 364..912 | 48..596 | 2832 | 99.5 | Plus |
Mctp-PA | 893 | CG15078-PA | 345..893 | 48..596 | 2832 | 99.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI19221-PA | 583 | GI19221-PA | 1..583 | 15..596 | 2612 | 91.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL10771-PA | 586 | GL10771-PA | 1..586 | 1..596 | 2780 | 94.3 | Plus |
Dper\GL11879-PA | 1027 | GL11879-PA | 61..216 | 212..355 | 158 | 31.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA17320-PA | 586 | GA17320-PA | 1..586 | 1..596 | 2775 | 94.1 | Plus |
Dpse\GA16742-PA | 1027 | GA16742-PA | 61..216 | 212..355 | 158 | 31.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM21916-PA | 596 | GM21916-PA | 1..596 | 1..596 | 3135 | 98.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD11410-PA | 596 | GD11410-PA | 1..596 | 1..596 | 3154 | 99.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ20296-PA | 585 | GJ20296-PA | 3..585 | 6..596 | 2615 | 90.6 | Plus |
Dvir\GJ12273-PA | 962 | GJ12273-PA | 50..205 | 212..355 | 155 | 31.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK20924-PA | 597 | GK20924-PA | 1..597 | 1..596 | 2873 | 91 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE11998-PA | 948 | GE11998-PA | 388..948 | 36..596 | 2929 | 98.4 | Plus |
Translation from 98 to 1888
> RE18318.hyp MLGNSWPGCKRAPRMVLKHVRRQHEELREQLEQGCDDLMEVAESYFPDVL QHFQRNSKLAESSKRLKSQIWSSVVTILLVKAKDLPLAEDGSKLNDTHFK FRLGNEKYKSKSSWTERWLEQFDLHLFDEDQNLEIALWNRNTLYGKAIID LSVFQRENTHGIWKPLEDCPGEVHLMLTISGTTALETISDLKAFKEDPRE AQLLRERYKFLRCLQNLRDVGHLTVKVFGATGLAAADIGGKSDPFCVLEL GNARLQTQTEYKTLTPNWNKIFTFNVKDITQVLEITVFDEDRDHRVEFLG KLVIPLLRIKSGVKRWYTLKDKNLCVRAKGNSPQIQLELTVVWSEIRAVC RALQPKEEKLIQQEAKFKRQLFLRNVNRLKEIIMDILDAARYVQSCFEWE SPVRSSIAFVFWIVACVYGDLETVPLVLLLIILKNWLVRLITGTTDAAAH YDYEYDEDDDDDKEKEEKKSIKERLQAIQEVSQTVQNTIGYLASLGESTI NTFNFSVPELTWLAVVLLLGAILVLHFVPLRWLLLFWGLMKFSRRLLRPN TIPNNELLDFLSRVPDNEEINQYRELPPSAPTDQTRNNPKKKLKGS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Mctp-PB | 596 | CG15078-PB | 1..596 | 1..596 | 3108 | 100 | Plus |
Mctp-PG | 912 | CG15078-PG | 364..912 | 48..596 | 2832 | 99.5 | Plus |
Mctp-PF | 893 | CG15078-PF | 345..893 | 48..596 | 2832 | 99.5 | Plus |
Mctp-PE | 954 | CG15078-PE | 406..954 | 48..596 | 2832 | 99.5 | Plus |
Mctp-PD | 982 | CG15078-PD | 364..912 | 48..596 | 2832 | 99.5 | Plus |