BDGP Sequence Production Resources |
Search the DGRC for RE18358
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 183 |
Well: | 58 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Ada-RA |
Protein status: | RE18358.pep: gold |
Sequenced Size: | 1099 |
Gene | Date | Evidence |
---|---|---|
Ada | 2008-04-29 | Release 5.5 accounting |
Ada | 2008-04-29 | Picked prior to 5.5 |
Ada | 2008-08-15 | Release 5.9 accounting |
Ada | 2008-12-18 | 5.12 accounting |
1099 bp assembled on 2007-07-18
GenBank Submission: BT031009
> RE18358.complete ATTATTGTTAAACTACAAATGGAGCAGTTTCTTAAAGGTCTGCCCAAAGT AGAGCTCCATGCTCACCTCAACGGTTCCTTGGGCATCAAAAGCCTATGTG ATCTTGGCGAGCGATTGTATGGAACCTCTTGTAAAGATTTCCTGAAGTTG TGCGCGCACTTCAGCCGATTTGAAAAGGATATGGATGCATGCTTCGAGAA GTTTGCATTTGTGCACGAGTTGACCTCCACCCGGGAGGGTCTGCGATTTG CCACGGAGTTGGCGATTCGAGATTTCGCTGAGGACAACGTCCAGTATGTG GAAATGAGGACCACTCCTAAGGCAAACGAGAACTATTCACGCAGGGACTA CCTGCAGATCGTGATCGATGCAATTAAGGCAGCTAGCGAAACGTATCCAG AGATAACAGTCAAGCTACTGCCCTCCATCAATCGAGCGGAACCAGTGGAC GTGGCTGAGGAAACAGTTTCCCTGGCTGTGGAGTTGGCACGGGCTCATCC AAATCTTATCTTAGGCATCGATCTTAGCGGTAATCCAGGGAAGGGGCGGT TTTCCGACTTTGCTCCTATTCTTGCACAGGCCCGGGATAAGGGTCTGAAG TTAGCTATACACTGCGCCGAGATCGAGAATCCATCGGAGGTAAAGGAAAT GCTGCACTTTGGAATGTCCCGCTGTGGACATGGAACTTTTCTTACTCCCG AGGACATTGGGCAGCTTAAACAACGAAATATTGCCATTGAATGCTGCCTC ACTAGTAATGTTAAGTCGGGAACAGTGCCCAGCTTGGAGGAGCACCACTT GAAAAGAATCATGGAGGCAGATGCACCCAAGGTTATCTGCACGGACGACA GTGGCGTTTTTGATACCACTTTGACAAAGGAGTTTCTGATTGCTGCGGAA ACTTTCGGTCTAACCCGTGAACAATGCATCGATTTGACCTTGGAGGCAGT GCATCATTCATTCGCCAGCGAACAGGAGCAAATACAGATGGCGGATAGGG TGGGGAACTACGCAGACATATTGGTCAAATAAAAAAACTGTCACTGCCCT AATTGAAATAAATAAGTTTTTGTATGTAACACCAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Ada-RA | 1125 | Ada-RA | 43..1125 | 1..1083 | 5415 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 4891120..4892202 | 1..1083 | 5325 | 99.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 9065221..9066304 | 1..1084 | 5420 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 8806052..8807135 | 1..1084 | 5420 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 4891120..4892202 | 1..1083 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ada-RA | 1..1014 | 19..1032 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ada-RA | 1..1014 | 19..1032 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ada-RA | 1..1014 | 19..1032 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ada-RA | 1..1014 | 19..1032 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ada-RA | 1..1014 | 19..1032 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ada-RA | 43..1074 | 1..1032 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ada-RA | 43..1125 | 1..1083 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ada-RA | 39..1121 | 1..1083 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ada-RA | 43..1074 | 1..1032 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ada-RA | 39..1121 | 1..1083 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9065221..9066303 | 1..1083 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9065221..9066303 | 1..1083 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9065221..9066303 | 1..1083 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 4890943..4892025 | 1..1083 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 8806052..8807134 | 1..1083 | 100 | Plus |
Translation from 0 to 1031
> RE18358.hyp IIVKLQMEQFLKGLPKVELHAHLNGSLGIKSLCDLGERLYGTSCKDFLKL CAHFSRFEKDMDACFEKFAFVHELTSTREGLRFATELAIRDFAEDNVQYV EMRTTPKANENYSRRDYLQIVIDAIKAASETYPEITVKLLPSINRAEPVD VAEETVSLAVELARAHPNLILGIDLSGNPGKGRFSDFAPILAQARDKGLK LAIHCAEIENPSEVKEMLHFGMSRCGHGTFLTPEDIGQLKQRNIAIECCL TSNVKSGTVPSLEEHHLKRIMEADAPKVICTDDSGVFDTTLTKEFLIAAE TFGLTREQCIDLTLEAVHHSFASEQEQIQMADRVGNYADILVK*
Translation from 18 to 1031
> RE18358.pep MEQFLKGLPKVELHAHLNGSLGIKSLCDLGERLYGTSCKDFLKLCAHFSR FEKDMDACFEKFAFVHELTSTREGLRFATELAIRDFAEDNVQYVEMRTTP KANENYSRRDYLQIVIDAIKAASETYPEITVKLLPSINRAEPVDVAEETV SLAVELARAHPNLILGIDLSGNPGKGRFSDFAPILAQARDKGLKLAIHCA EIENPSEVKEMLHFGMSRCGHGTFLTPEDIGQLKQRNIAIECCLTSNVKS GTVPSLEEHHLKRIMEADAPKVICTDDSGVFDTTLTKEFLIAAETFGLTR EQCIDLTLEAVHHSFASEQEQIQMADRVGNYADILVK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16581-PA | 338 | GF16581-PA | 1..334 | 1..332 | 1368 | 74.9 | Plus |
Dana\GF23893-PA | 516 | GF23893-PA | 236..460 | 82..292 | 167 | 28.3 | Plus |
Dana\GF16877-PA | 507 | GF16877-PA | 200..440 | 48..282 | 165 | 25.2 | Plus |
Dana\GF16876-PA | 506 | GF16876-PA | 227..450 | 83..292 | 164 | 25.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG15092-PA | 342 | GG15092-PA | 1..339 | 1..337 | 1586 | 87.9 | Plus |
Dere\GG15788-PA | 520 | GG15788-PA | 240..464 | 82..292 | 161 | 28.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH19347-PA | 334 | GH19347-PA | 1..322 | 1..321 | 1147 | 65 | Plus |
Dgri\GH15341-PA | 508 | GH15341-PA | 179..454 | 47..292 | 165 | 26.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Ada-PA | 337 | CG11994-PA | 1..337 | 1..337 | 1740 | 100 | Plus |
Adgf-B-PA | 520 | CG5998-PA | 240..448 | 82..277 | 156 | 29 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI22557-PA | 338 | GI22557-PA | 1..335 | 1..334 | 1126 | 61.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL22286-PA | 340 | GL22286-PA | 1..337 | 1..335 | 1262 | 68.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA11319-PA | 340 | GA11319-PA | 1..337 | 1..335 | 1253 | 68.2 | Plus |
Dpse\GA27135-PB | 506 | GA27135-PB | 227..482 | 83..321 | 167 | 25.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM23784-PA | 337 | GM23784-PA | 1..337 | 1..337 | 1691 | 93.8 | Plus |
Dsec\GM24312-PA | 520 | GM24312-PA | 240..464 | 82..292 | 164 | 28.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD18595-PA | 337 | GD18595-PA | 1..337 | 1..337 | 1692 | 93.8 | Plus |
Dsim\GD12382-PA | 520 | GD12382-PA | 240..464 | 82..292 | 162 | 28.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ23746-PA | 338 | GJ23746-PA | 1..332 | 1..331 | 1146 | 62.8 | Plus |