Clone RE18358 Report

Search the DGRC for RE18358

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:183
Well:58
Vector:pFlc-1
Associated Gene/TranscriptAda-RA
Protein status:RE18358.pep: gold
Sequenced Size:1099

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
Ada 2008-04-29 Release 5.5 accounting
Ada 2008-04-29 Picked prior to 5.5
Ada 2008-08-15 Release 5.9 accounting
Ada 2008-12-18 5.12 accounting

Clone Sequence Records

RE18358.complete Sequence

1099 bp assembled on 2007-07-18

GenBank Submission: BT031009

> RE18358.complete
ATTATTGTTAAACTACAAATGGAGCAGTTTCTTAAAGGTCTGCCCAAAGT
AGAGCTCCATGCTCACCTCAACGGTTCCTTGGGCATCAAAAGCCTATGTG
ATCTTGGCGAGCGATTGTATGGAACCTCTTGTAAAGATTTCCTGAAGTTG
TGCGCGCACTTCAGCCGATTTGAAAAGGATATGGATGCATGCTTCGAGAA
GTTTGCATTTGTGCACGAGTTGACCTCCACCCGGGAGGGTCTGCGATTTG
CCACGGAGTTGGCGATTCGAGATTTCGCTGAGGACAACGTCCAGTATGTG
GAAATGAGGACCACTCCTAAGGCAAACGAGAACTATTCACGCAGGGACTA
CCTGCAGATCGTGATCGATGCAATTAAGGCAGCTAGCGAAACGTATCCAG
AGATAACAGTCAAGCTACTGCCCTCCATCAATCGAGCGGAACCAGTGGAC
GTGGCTGAGGAAACAGTTTCCCTGGCTGTGGAGTTGGCACGGGCTCATCC
AAATCTTATCTTAGGCATCGATCTTAGCGGTAATCCAGGGAAGGGGCGGT
TTTCCGACTTTGCTCCTATTCTTGCACAGGCCCGGGATAAGGGTCTGAAG
TTAGCTATACACTGCGCCGAGATCGAGAATCCATCGGAGGTAAAGGAAAT
GCTGCACTTTGGAATGTCCCGCTGTGGACATGGAACTTTTCTTACTCCCG
AGGACATTGGGCAGCTTAAACAACGAAATATTGCCATTGAATGCTGCCTC
ACTAGTAATGTTAAGTCGGGAACAGTGCCCAGCTTGGAGGAGCACCACTT
GAAAAGAATCATGGAGGCAGATGCACCCAAGGTTATCTGCACGGACGACA
GTGGCGTTTTTGATACCACTTTGACAAAGGAGTTTCTGATTGCTGCGGAA
ACTTTCGGTCTAACCCGTGAACAATGCATCGATTTGACCTTGGAGGCAGT
GCATCATTCATTCGCCAGCGAACAGGAGCAAATACAGATGGCGGATAGGG
TGGGGAACTACGCAGACATATTGGTCAAATAAAAAAACTGTCACTGCCCT
AATTGAAATAAATAAGTTTTTGTATGTAACACCAAAAAAAAAAAAAAAA

RE18358.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:17:29
Subject Length Description Subject Range Query Range Score Percent Strand
Ada-RA 1125 Ada-RA 43..1125 1..1083 5415 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:30:24
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 4891120..4892202 1..1083 5325 99.4 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:39:24 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:30:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9065221..9066304 1..1084 5420 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:35:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 8806052..8807135 1..1084 5420 100 Plus
Blast to na_te.dros performed on 2019-03-15 19:30:22 has no hits.

RE18358.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:31:08 Download gff for RE18358.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 4891120..4892202 1..1083 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:59:31 Download gff for RE18358.complete
Subject Subject Range Query Range Percent Splice Strand
Ada-RA 1..1014 19..1032 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:26:05 Download gff for RE18358.complete
Subject Subject Range Query Range Percent Splice Strand
Ada-RA 1..1014 19..1032 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 04:58:20 Download gff for RE18358.complete
Subject Subject Range Query Range Percent Splice Strand
Ada-RA 1..1014 19..1032 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:11:02 Download gff for RE18358.complete
Subject Subject Range Query Range Percent Splice Strand
Ada-RA 1..1014 19..1032 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:02:04 Download gff for RE18358.complete
Subject Subject Range Query Range Percent Splice Strand
Ada-RA 1..1014 19..1032 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:31:39 Download gff for RE18358.complete
Subject Subject Range Query Range Percent Splice Strand
Ada-RA 43..1074 1..1032 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:26:04 Download gff for RE18358.complete
Subject Subject Range Query Range Percent Splice Strand
Ada-RA 43..1125 1..1083 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:58:20 Download gff for RE18358.complete
Subject Subject Range Query Range Percent Splice Strand
Ada-RA 39..1121 1..1083 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:11:02 Download gff for RE18358.complete
Subject Subject Range Query Range Percent Splice Strand
Ada-RA 43..1074 1..1032 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:02:04 Download gff for RE18358.complete
Subject Subject Range Query Range Percent Splice Strand
Ada-RA 39..1121 1..1083 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:31:08 Download gff for RE18358.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9065221..9066303 1..1083 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:31:08 Download gff for RE18358.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9065221..9066303 1..1083 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:31:08 Download gff for RE18358.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9065221..9066303 1..1083 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:58:20 Download gff for RE18358.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4890943..4892025 1..1083 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:58:18 Download gff for RE18358.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8806052..8807134 1..1083 100   Plus

RE18358.hyp Sequence

Translation from 0 to 1031

> RE18358.hyp
IIVKLQMEQFLKGLPKVELHAHLNGSLGIKSLCDLGERLYGTSCKDFLKL
CAHFSRFEKDMDACFEKFAFVHELTSTREGLRFATELAIRDFAEDNVQYV
EMRTTPKANENYSRRDYLQIVIDAIKAASETYPEITVKLLPSINRAEPVD
VAEETVSLAVELARAHPNLILGIDLSGNPGKGRFSDFAPILAQARDKGLK
LAIHCAEIENPSEVKEMLHFGMSRCGHGTFLTPEDIGQLKQRNIAIECCL
TSNVKSGTVPSLEEHHLKRIMEADAPKVICTDDSGVFDTTLTKEFLIAAE
TFGLTREQCIDLTLEAVHHSFASEQEQIQMADRVGNYADILVK*

RE18358.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:17:49
Subject Length Description Subject Range Query Range Score Percent Strand
Ada-PA 337 CG11994-PA 1..337 7..343 1740 100 Plus
Adgf-B-PA 520 CG5998-PA 240..448 88..283 156 29 Plus

RE18358.pep Sequence

Translation from 18 to 1031

> RE18358.pep
MEQFLKGLPKVELHAHLNGSLGIKSLCDLGERLYGTSCKDFLKLCAHFSR
FEKDMDACFEKFAFVHELTSTREGLRFATELAIRDFAEDNVQYVEMRTTP
KANENYSRRDYLQIVIDAIKAASETYPEITVKLLPSINRAEPVDVAEETV
SLAVELARAHPNLILGIDLSGNPGKGRFSDFAPILAQARDKGLKLAIHCA
EIENPSEVKEMLHFGMSRCGHGTFLTPEDIGQLKQRNIAIECCLTSNVKS
GTVPSLEEHHLKRIMEADAPKVICTDDSGVFDTTLTKEFLIAAETFGLTR
EQCIDLTLEAVHHSFASEQEQIQMADRVGNYADILVK*

RE18358.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:00:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16581-PA 338 GF16581-PA 1..334 1..332 1368 74.9 Plus
Dana\GF23893-PA 516 GF23893-PA 236..460 82..292 167 28.3 Plus
Dana\GF16877-PA 507 GF16877-PA 200..440 48..282 165 25.2 Plus
Dana\GF16876-PA 506 GF16876-PA 227..450 83..292 164 25.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:00:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15092-PA 342 GG15092-PA 1..339 1..337 1586 87.9 Plus
Dere\GG15788-PA 520 GG15788-PA 240..464 82..292 161 28.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:00:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19347-PA 334 GH19347-PA 1..322 1..321 1147 65 Plus
Dgri\GH15341-PA 508 GH15341-PA 179..454 47..292 165 26.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:43:49
Subject Length Description Subject Range Query Range Score Percent Strand
Ada-PA 337 CG11994-PA 1..337 1..337 1740 100 Plus
Adgf-B-PA 520 CG5998-PA 240..448 82..277 156 29 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:00:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22557-PA 338 GI22557-PA 1..335 1..334 1126 61.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:00:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22286-PA 340 GL22286-PA 1..337 1..335 1262 68.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:00:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11319-PA 340 GA11319-PA 1..337 1..335 1253 68.2 Plus
Dpse\GA27135-PB 506 GA27135-PB 227..482 83..321 167 25.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:00:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23784-PA 337 GM23784-PA 1..337 1..337 1691 93.8 Plus
Dsec\GM24312-PA 520 GM24312-PA 240..464 82..292 164 28.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:00:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18595-PA 337 GD18595-PA 1..337 1..337 1692 93.8 Plus
Dsim\GD12382-PA 520 GD12382-PA 240..464 82..292 162 28.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:00:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23746-PA 338 GJ23746-PA 1..332 1..331 1146 62.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:00:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11584-PA 338 GK11584-PA 1..326 1..324 1230 68.1 Plus
Dwil\GK14194-PA 509 GK14194-PA 202..487 48..323 167 22.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:00:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25929-PA 337 GE25929-PA 1..337 1..337 1633 90.5 Plus
Dyak\GE22125-PA 519 GE22125-PA 239..463 82..292 159 28.2 Plus