Clone RE18409 Report

Search the DGRC for RE18409

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:184
Well:9
Vector:pFlc-1
Associated Gene/TranscriptPICK1-RA
Protein status:RE18409.pep: gold
Preliminary Size:1467
Sequenced Size:1704

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6167 2002-01-01 Sim4 clustering to Release 2
CG6167 2002-01-03 Blastp of sequenced clone
CG6167 2003-01-01 Sim4 clustering to Release 3
PICK1 2008-04-29 Release 5.5 accounting
PICK1 2008-08-15 Release 5.9 accounting
PICK1 2008-12-18 5.12 accounting

Clone Sequence Records

RE18409.complete Sequence

1704 bp (1704 high quality bases) assembled on 2002-01-03

GenBank Submission: AY075464

> RE18409.complete
AGTTACCTATCGCCGATGACAGTTGGCGGAGCTTCAAGTGGCCAAAATAA
ACAAATATTTATTTTCTAATAACGCAAAATGCTGACGGACACGGAAGATG
ACTTCTTTTTCGAAGAGGATAAGATGGGCATGACTGTCAGCACGAATGCT
GTCGTCATTACAAAGGATCAGAGCAACCTGATTGGCATCAGCATTGGGGG
TGGAGCACCCATGTGTCCATGTCTGTATATCGTGCAGATCTTCGATGGAA
CACCCGCTGCTCGTGAGGGATCCCTGCAATCAGGAGATGAACTGTTGGCT
GTGAATTCGGTGAGCGTGAAGGGCAAGACGAAAGTGGAGGTGGCCAAGAT
GATCCAGACGGCCACCGACGAGGTGGTTATCCATTACAACAAGCTGCACG
CCGATCCCGAACAGGGCAAGACACTGGATATCATCCTCAAGAAGCTGAAG
CATCGGATTGTGGACAATTTGTCGAGCAATACGGCGGATACGCTGGGTCT
ATCCCGCGCCATTCTGTGCAATGATTCGCTGGTCAAGCGACTGGAGGAGC
TCGAGGGCACTGAACTGATGTACAAAGGACTCGTAGAGCATGCTCGCCGG
ATGCTCAAGGCCTACTACGATCTTCTGCAGACATATAAATCCTTTGGGGA
TTGCTTCACCCAAATATCGGTCCATGAACCGCAACAGCGGGCATCGGAGG
CGTTTCGAACGTTTGGCGAGTTCCATCGCACCTTGGAGAAGGATGGCTTG
GGCATCATCAAACAGATAAAGCCAGTGCTGGCCGATCTGGGAACGTATCT
GAATAAAGCCATTCCGGACACAAAGCTCACGGTGCGTCGCTATGCGGATG
CCAAGTTCACATATCTTTCGTACTGCTTGAAGGTCAAGGAGATGGACGAT
GAGGAACATGGCTTTGCTGCCCTGCAGGAGCCACTTTATCGCGTCGAAAC
GGGCAACTATGAGTACCGTTTGATACTGCGATGTCGCCAGGATGCACGCA
GCAAGTTCGCCAAACTCCGCACCGATGTTCTCGAGAAGATGGAGCTGCTG
GAATGCAAACATGCCATGGATCTGAACAAGCAGCTGCGAAGCCTGCTCGA
AAGTTTGGCCGAACTTCATAGGAGTTTGGTGGATCGACTAGACTCGCTGC
CACCGCTCTTTCCCATCGAAGTGGACTTCAAGGAGACGGACTTTCAGTAC
AAGTCGAGTACCCTGAAGCCGCAGGAGCTGGACGATGATGAAATCGAGGC
CAACAATCATCCGCATTCCACTCCTTCGCAAGTCGATTGCGGTTTCGAGG
CTGTCGAACAGCCGGCGGCAATTATAAATGTGGAAGCGGCCAAGGCGTCC
GTTGATTCGTCCACCTTACAATCCGCCAGCGAGAACGAAACGTTGCTCAA
GGAGCTGGGCCTGTACGATGTGGATCTGCTCTCCAATCCGCAGACCATTA
GCAACCAAAAGGACTCCATTGCTGCCCAAAATGATGGCTACGATTTCGAC
TTGTTCTTGAACCAGGCGACTGCAGCCACCACCAGTTTGGAGCGCGATCT
CATGTCCTCGAATGCGGAGGAGATGGACCTGCTACTGCAATAGGCTACTT
AGTACAAATATTAAGTAATGTGTTAGATAAATATTAAATGTTTCAGTATT
TGGTGTAGATATCAAAAAATATTAAAAGCCTTTCAATTTAAAAAAAAAAA
AAAA

RE18409.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:33:50
Subject Length Description Subject Range Query Range Score Percent Strand
PICK1-RA 1699 PICK1-RA 11..1699 1..1689 8445 100 Plus
PICK1.a 1898 PICK1.a 334..1898 125..1689 7825 100 Plus
PICK1-RB 1652 PICK1-RB 89..1652 126..1689 7820 100 Plus
PICK1.a 1898 PICK1.a 1..116 11..126 580 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 03:12:58
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 12696155..12697608 236..1689 7270 100 Plus
chr2L 23010047 chr2L 12693729..12693854 1..126 630 100 Plus
chr2L 23010047 chr2L 12694958..12695069 126..237 560 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:39:29 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 03:12:56
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12697464..12698919 236..1691 7280 100 Plus
2L 23513712 2L 12695038..12695163 1..126 630 100 Plus
2L 23513712 2L 12696267..12696378 126..237 560 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:01:50
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12697464..12698919 236..1691 7280 100 Plus
2L 23513712 2L 12695038..12695163 1..126 630 100 Plus
2L 23513712 2L 12696267..12696378 126..237 560 100 Plus
Blast to na_te.dros performed on 2019-03-16 03:12:56 has no hits.

RE18409.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:13:57 Download gff for RE18409.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 12693729..12693853 1..125 100 -> Plus
chr2L 12694958..12695069 126..237 100 -> Plus
chr2L 12696157..12697608 238..1689 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:59:37 Download gff for RE18409.complete
Subject Subject Range Query Range Percent Splice Strand
PICK1-RA 1..1515 79..1593 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:55:57 Download gff for RE18409.complete
Subject Subject Range Query Range Percent Splice Strand
PICK1-RA 1..1515 79..1593 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:43:17 Download gff for RE18409.complete
Subject Subject Range Query Range Percent Splice Strand
PICK1-RA 1..1515 79..1593 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:20:49 Download gff for RE18409.complete
Subject Subject Range Query Range Percent Splice Strand
PICK1-RA 1..1515 79..1593 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:33:32 Download gff for RE18409.complete
Subject Subject Range Query Range Percent Splice Strand
PICK1-RA 1..1515 79..1593 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:19:56 Download gff for RE18409.complete
Subject Subject Range Query Range Percent Splice Strand
PICK1-RA 1..1689 1..1689 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:55:56 Download gff for RE18409.complete
Subject Subject Range Query Range Percent Splice Strand
PICK1-RA 1..1689 1..1689 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:43:17 Download gff for RE18409.complete
Subject Subject Range Query Range Percent Splice Strand
PICK1-RA 6..1694 1..1689 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:20:49 Download gff for RE18409.complete
Subject Subject Range Query Range Percent Splice Strand
PICK1-RA 1..1689 1..1689 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:33:32 Download gff for RE18409.complete
Subject Subject Range Query Range Percent Splice Strand
PICK1-RA 6..1694 1..1689 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:13:57 Download gff for RE18409.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12695038..12695162 1..125 100 -> Plus
2L 12696267..12696378 126..237 100 -> Plus
2L 12697466..12698917 238..1689 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:13:57 Download gff for RE18409.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12695038..12695162 1..125 100 -> Plus
2L 12696267..12696378 126..237 100 -> Plus
2L 12697466..12698917 238..1689 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:13:57 Download gff for RE18409.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12695038..12695162 1..125 100 -> Plus
2L 12696267..12696378 126..237 100 -> Plus
2L 12697466..12698917 238..1689 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:43:17 Download gff for RE18409.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12695038..12695162 1..125 100 -> Plus
arm_2L 12696267..12696378 126..237 100 -> Plus
arm_2L 12697466..12698917 238..1689 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:55:26 Download gff for RE18409.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12697466..12698917 238..1689 100   Plus
2L 12695038..12695162 1..125 100 -> Plus
2L 12696267..12696378 126..237 100 -> Plus

RE18409.pep Sequence

Translation from 78 to 1592

> RE18409.pep
MLTDTEDDFFFEEDKMGMTVSTNAVVITKDQSNLIGISIGGGAPMCPCLY
IVQIFDGTPAAREGSLQSGDELLAVNSVSVKGKTKVEVAKMIQTATDEVV
IHYNKLHADPEQGKTLDIILKKLKHRIVDNLSSNTADTLGLSRAILCNDS
LVKRLEELEGTELMYKGLVEHARRMLKAYYDLLQTYKSFGDCFTQISVHE
PQQRASEAFRTFGEFHRTLEKDGLGIIKQIKPVLADLGTYLNKAIPDTKL
TVRRYADAKFTYLSYCLKVKEMDDEEHGFAALQEPLYRVETGNYEYRLIL
RCRQDARSKFAKLRTDVLEKMELLECKHAMDLNKQLRSLLESLAELHRSL
VDRLDSLPPLFPIEVDFKETDFQYKSSTLKPQELDDDEIEANNHPHSTPS
QVDCGFEAVEQPAAIINVEAAKASVDSSTLQSASENETLLKELGLYDVDL
LSNPQTISNQKDSIAAQNDGYDFDLFLNQATAATTSLERDLMSSNAEEMD
LLLQ*

RE18409.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 02:53:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14205-PA 580 GF14205-PA 87..580 11..504 2435 92.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:53:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23794-PA 576 GG23794-PA 84..576 11..504 2564 98 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 02:53:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10118-PA 476 GH10118-PA 1..476 18..504 2283 89.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:04:45
Subject Length Description Subject Range Query Range Score Percent Strand
PICK1-PA 504 CG6167-PA 1..504 1..504 2562 100 Plus
PICK1-PE 577 CG6167-PE 84..577 11..504 2491 99.2 Plus
PICK1-PF 487 CG6167-PF 1..487 18..504 2470 100 Plus
PICK1-PD 487 CG6167-PD 1..487 18..504 2470 100 Plus
PICK1-PB 487 CG6167-PB 1..487 18..504 2470 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 02:53:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14495-PA 563 GI14495-PA 77..563 11..504 2336 90.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 02:53:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19723-PA 577 GL19723-PA 84..577 12..504 2434 92.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 02:53:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19403-PA 576 GA19403-PA 83..576 12..504 2437 92.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:53:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26913-PA 487 GM26913-PA 1..487 18..504 2576 99.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:53:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23849-PA 577 GD23849-PA 84..577 11..504 2598 98.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 02:53:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16275-PA 500 GJ16275-PA 1..500 1..504 2297 87.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 02:53:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15453-PA 506 GK15453-PA 1..506 1..504 2389 89.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 02:53:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18598-PA 576 GE18598-PA 84..576 11..504 2555 97.6 Plus

RE18409.hyp Sequence

Translation from 78 to 1592

> RE18409.hyp
MLTDTEDDFFFEEDKMGMTVSTNAVVITKDQSNLIGISIGGGAPMCPCLY
IVQIFDGTPAAREGSLQSGDELLAVNSVSVKGKTKVEVAKMIQTATDEVV
IHYNKLHADPEQGKTLDIILKKLKHRIVDNLSSNTADTLGLSRAILCNDS
LVKRLEELEGTELMYKGLVEHARRMLKAYYDLLQTYKSFGDCFTQISVHE
PQQRASEAFRTFGEFHRTLEKDGLGIIKQIKPVLADLGTYLNKAIPDTKL
TVRRYADAKFTYLSYCLKVKEMDDEEHGFAALQEPLYRVETGNYEYRLIL
RCRQDARSKFAKLRTDVLEKMELLECKHAMDLNKQLRSLLESLAELHRSL
VDRLDSLPPLFPIEVDFKETDFQYKSSTLKPQELDDDEIEANNHPHSTPS
QVDCGFEAVEQPAAIINVEAAKASVDSSTLQSASENETLLKELGLYDVDL
LSNPQTISNQKDSIAAQNDGYDFDLFLNQATAATTSLERDLMSSNAEEMD
LLLQ*

RE18409.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:33:46
Subject Length Description Subject Range Query Range Score Percent Strand
PICK1-PA 504 CG6167-PA 1..504 1..504 2562 100 Plus
PICK1-PE 577 CG6167-PE 84..577 11..504 2491 99.2 Plus
PICK1-PF 487 CG6167-PF 1..487 18..504 2470 100 Plus
PICK1-PD 487 CG6167-PD 1..487 18..504 2470 100 Plus
PICK1-PB 487 CG6167-PB 1..487 18..504 2470 100 Plus