BDGP Sequence Production Resources |
Search the DGRC for RE18409
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 184 |
Well: | 9 |
Vector: | pFlc-1 |
Associated Gene/Transcript | PICK1-RA |
Protein status: | RE18409.pep: gold |
Preliminary Size: | 1467 |
Sequenced Size: | 1704 |
Gene | Date | Evidence |
---|---|---|
CG6167 | 2002-01-01 | Sim4 clustering to Release 2 |
CG6167 | 2002-01-03 | Blastp of sequenced clone |
CG6167 | 2003-01-01 | Sim4 clustering to Release 3 |
PICK1 | 2008-04-29 | Release 5.5 accounting |
PICK1 | 2008-08-15 | Release 5.9 accounting |
PICK1 | 2008-12-18 | 5.12 accounting |
1704 bp (1704 high quality bases) assembled on 2002-01-03
GenBank Submission: AY075464
> RE18409.complete AGTTACCTATCGCCGATGACAGTTGGCGGAGCTTCAAGTGGCCAAAATAA ACAAATATTTATTTTCTAATAACGCAAAATGCTGACGGACACGGAAGATG ACTTCTTTTTCGAAGAGGATAAGATGGGCATGACTGTCAGCACGAATGCT GTCGTCATTACAAAGGATCAGAGCAACCTGATTGGCATCAGCATTGGGGG TGGAGCACCCATGTGTCCATGTCTGTATATCGTGCAGATCTTCGATGGAA CACCCGCTGCTCGTGAGGGATCCCTGCAATCAGGAGATGAACTGTTGGCT GTGAATTCGGTGAGCGTGAAGGGCAAGACGAAAGTGGAGGTGGCCAAGAT GATCCAGACGGCCACCGACGAGGTGGTTATCCATTACAACAAGCTGCACG CCGATCCCGAACAGGGCAAGACACTGGATATCATCCTCAAGAAGCTGAAG CATCGGATTGTGGACAATTTGTCGAGCAATACGGCGGATACGCTGGGTCT ATCCCGCGCCATTCTGTGCAATGATTCGCTGGTCAAGCGACTGGAGGAGC TCGAGGGCACTGAACTGATGTACAAAGGACTCGTAGAGCATGCTCGCCGG ATGCTCAAGGCCTACTACGATCTTCTGCAGACATATAAATCCTTTGGGGA TTGCTTCACCCAAATATCGGTCCATGAACCGCAACAGCGGGCATCGGAGG CGTTTCGAACGTTTGGCGAGTTCCATCGCACCTTGGAGAAGGATGGCTTG GGCATCATCAAACAGATAAAGCCAGTGCTGGCCGATCTGGGAACGTATCT GAATAAAGCCATTCCGGACACAAAGCTCACGGTGCGTCGCTATGCGGATG CCAAGTTCACATATCTTTCGTACTGCTTGAAGGTCAAGGAGATGGACGAT GAGGAACATGGCTTTGCTGCCCTGCAGGAGCCACTTTATCGCGTCGAAAC GGGCAACTATGAGTACCGTTTGATACTGCGATGTCGCCAGGATGCACGCA GCAAGTTCGCCAAACTCCGCACCGATGTTCTCGAGAAGATGGAGCTGCTG GAATGCAAACATGCCATGGATCTGAACAAGCAGCTGCGAAGCCTGCTCGA AAGTTTGGCCGAACTTCATAGGAGTTTGGTGGATCGACTAGACTCGCTGC CACCGCTCTTTCCCATCGAAGTGGACTTCAAGGAGACGGACTTTCAGTAC AAGTCGAGTACCCTGAAGCCGCAGGAGCTGGACGATGATGAAATCGAGGC CAACAATCATCCGCATTCCACTCCTTCGCAAGTCGATTGCGGTTTCGAGG CTGTCGAACAGCCGGCGGCAATTATAAATGTGGAAGCGGCCAAGGCGTCC GTTGATTCGTCCACCTTACAATCCGCCAGCGAGAACGAAACGTTGCTCAA GGAGCTGGGCCTGTACGATGTGGATCTGCTCTCCAATCCGCAGACCATTA GCAACCAAAAGGACTCCATTGCTGCCCAAAATGATGGCTACGATTTCGAC TTGTTCTTGAACCAGGCGACTGCAGCCACCACCAGTTTGGAGCGCGATCT CATGTCCTCGAATGCGGAGGAGATGGACCTGCTACTGCAATAGGCTACTT AGTACAAATATTAAGTAATGTGTTAGATAAATATTAAATGTTTCAGTATT TGGTGTAGATATCAAAAAATATTAAAAGCCTTTCAATTTAAAAAAAAAAA AAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
PICK1-RA | 1699 | PICK1-RA | 11..1699 | 1..1689 | 8445 | 100 | Plus |
PICK1.a | 1898 | PICK1.a | 334..1898 | 125..1689 | 7825 | 100 | Plus |
PICK1-RB | 1652 | PICK1-RB | 89..1652 | 126..1689 | 7820 | 100 | Plus |
PICK1.a | 1898 | PICK1.a | 1..116 | 11..126 | 580 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 12696155..12697608 | 236..1689 | 7270 | 100 | Plus |
chr2L | 23010047 | chr2L | 12693729..12693854 | 1..126 | 630 | 100 | Plus |
chr2L | 23010047 | chr2L | 12694958..12695069 | 126..237 | 560 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 12697464..12698919 | 236..1691 | 7280 | 100 | Plus |
2L | 23513712 | 2L | 12695038..12695163 | 1..126 | 630 | 100 | Plus |
2L | 23513712 | 2L | 12696267..12696378 | 126..237 | 560 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 12697464..12698919 | 236..1691 | 7280 | 100 | Plus |
2L | 23513712 | 2L | 12695038..12695163 | 1..126 | 630 | 100 | Plus |
2L | 23513712 | 2L | 12696267..12696378 | 126..237 | 560 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 12693729..12693853 | 1..125 | 100 | -> | Plus |
chr2L | 12694958..12695069 | 126..237 | 100 | -> | Plus |
chr2L | 12696157..12697608 | 238..1689 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
PICK1-RA | 1..1515 | 79..1593 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
PICK1-RA | 1..1515 | 79..1593 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
PICK1-RA | 1..1515 | 79..1593 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
PICK1-RA | 1..1515 | 79..1593 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
PICK1-RA | 1..1515 | 79..1593 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
PICK1-RA | 1..1689 | 1..1689 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
PICK1-RA | 1..1689 | 1..1689 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
PICK1-RA | 6..1694 | 1..1689 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
PICK1-RA | 1..1689 | 1..1689 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
PICK1-RA | 6..1694 | 1..1689 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 12695038..12695162 | 1..125 | 100 | -> | Plus |
2L | 12696267..12696378 | 126..237 | 100 | -> | Plus |
2L | 12697466..12698917 | 238..1689 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 12695038..12695162 | 1..125 | 100 | -> | Plus |
2L | 12696267..12696378 | 126..237 | 100 | -> | Plus |
2L | 12697466..12698917 | 238..1689 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 12695038..12695162 | 1..125 | 100 | -> | Plus |
2L | 12696267..12696378 | 126..237 | 100 | -> | Plus |
2L | 12697466..12698917 | 238..1689 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 12695038..12695162 | 1..125 | 100 | -> | Plus |
arm_2L | 12696267..12696378 | 126..237 | 100 | -> | Plus |
arm_2L | 12697466..12698917 | 238..1689 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 12697466..12698917 | 238..1689 | 100 | Plus | |
2L | 12695038..12695162 | 1..125 | 100 | -> | Plus |
2L | 12696267..12696378 | 126..237 | 100 | -> | Plus |
Translation from 78 to 1592
> RE18409.pep MLTDTEDDFFFEEDKMGMTVSTNAVVITKDQSNLIGISIGGGAPMCPCLY IVQIFDGTPAAREGSLQSGDELLAVNSVSVKGKTKVEVAKMIQTATDEVV IHYNKLHADPEQGKTLDIILKKLKHRIVDNLSSNTADTLGLSRAILCNDS LVKRLEELEGTELMYKGLVEHARRMLKAYYDLLQTYKSFGDCFTQISVHE PQQRASEAFRTFGEFHRTLEKDGLGIIKQIKPVLADLGTYLNKAIPDTKL TVRRYADAKFTYLSYCLKVKEMDDEEHGFAALQEPLYRVETGNYEYRLIL RCRQDARSKFAKLRTDVLEKMELLECKHAMDLNKQLRSLLESLAELHRSL VDRLDSLPPLFPIEVDFKETDFQYKSSTLKPQELDDDEIEANNHPHSTPS QVDCGFEAVEQPAAIINVEAAKASVDSSTLQSASENETLLKELGLYDVDL LSNPQTISNQKDSIAAQNDGYDFDLFLNQATAATTSLERDLMSSNAEEMD LLLQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF14205-PA | 580 | GF14205-PA | 87..580 | 11..504 | 2435 | 92.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG23794-PA | 576 | GG23794-PA | 84..576 | 11..504 | 2564 | 98 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH10118-PA | 476 | GH10118-PA | 1..476 | 18..504 | 2283 | 89.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
PICK1-PA | 504 | CG6167-PA | 1..504 | 1..504 | 2562 | 100 | Plus |
PICK1-PE | 577 | CG6167-PE | 84..577 | 11..504 | 2491 | 99.2 | Plus |
PICK1-PF | 487 | CG6167-PF | 1..487 | 18..504 | 2470 | 100 | Plus |
PICK1-PD | 487 | CG6167-PD | 1..487 | 18..504 | 2470 | 100 | Plus |
PICK1-PB | 487 | CG6167-PB | 1..487 | 18..504 | 2470 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI14495-PA | 563 | GI14495-PA | 77..563 | 11..504 | 2336 | 90.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL19723-PA | 577 | GL19723-PA | 84..577 | 12..504 | 2434 | 92.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19403-PA | 576 | GA19403-PA | 83..576 | 12..504 | 2437 | 92.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM26913-PA | 487 | GM26913-PA | 1..487 | 18..504 | 2576 | 99.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD23849-PA | 577 | GD23849-PA | 84..577 | 11..504 | 2598 | 98.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ16275-PA | 500 | GJ16275-PA | 1..500 | 1..504 | 2297 | 87.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK15453-PA | 506 | GK15453-PA | 1..506 | 1..504 | 2389 | 89.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE18598-PA | 576 | GE18598-PA | 84..576 | 11..504 | 2555 | 97.6 | Plus |
Translation from 78 to 1592
> RE18409.hyp MLTDTEDDFFFEEDKMGMTVSTNAVVITKDQSNLIGISIGGGAPMCPCLY IVQIFDGTPAAREGSLQSGDELLAVNSVSVKGKTKVEVAKMIQTATDEVV IHYNKLHADPEQGKTLDIILKKLKHRIVDNLSSNTADTLGLSRAILCNDS LVKRLEELEGTELMYKGLVEHARRMLKAYYDLLQTYKSFGDCFTQISVHE PQQRASEAFRTFGEFHRTLEKDGLGIIKQIKPVLADLGTYLNKAIPDTKL TVRRYADAKFTYLSYCLKVKEMDDEEHGFAALQEPLYRVETGNYEYRLIL RCRQDARSKFAKLRTDVLEKMELLECKHAMDLNKQLRSLLESLAELHRSL VDRLDSLPPLFPIEVDFKETDFQYKSSTLKPQELDDDEIEANNHPHSTPS QVDCGFEAVEQPAAIINVEAAKASVDSSTLQSASENETLLKELGLYDVDL LSNPQTISNQKDSIAAQNDGYDFDLFLNQATAATTSLERDLMSSNAEEMD LLLQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
PICK1-PA | 504 | CG6167-PA | 1..504 | 1..504 | 2562 | 100 | Plus |
PICK1-PE | 577 | CG6167-PE | 84..577 | 11..504 | 2491 | 99.2 | Plus |
PICK1-PF | 487 | CG6167-PF | 1..487 | 18..504 | 2470 | 100 | Plus |
PICK1-PD | 487 | CG6167-PD | 1..487 | 18..504 | 2470 | 100 | Plus |
PICK1-PB | 487 | CG6167-PB | 1..487 | 18..504 | 2470 | 100 | Plus |