RE18415.complete Sequence
825 bp (825 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071154
> RE18415.complete
GATTAGCGAAGTATACAATTTTCAGTGGACTATCGCTAATGTGACGAAAA
AAATTATAAAAAACATTTTTGATACTCATTTTTCCCAGTTTTTCCACCCG
GCCACGTTGGTTTCCACCCACATCAAGATTTCCTCCCAACAGCGTCTGCT
CGAGTGCTTCAGGATGACTTTGGTGGGCCTAGCTGCCCGCAAATTAGCGC
AAAAGAAGAGATCCGCAAAGCAAGCAGCAGACTTTCCCAATGGCATCCGG
TGCCAGAAGTGCCTGCAGATCGGACACTGGAGCTATGAGTGCAAGGAGAA
GCGCAAATACGTCCACCGGAGCTCGCGTACCAAGCAGCTAAGCAAGCGTA
TGTCCCAAAAGGAGGCTGACGCACCCAAGAACCAGGTGGAGGAGCACTCG
GAAGTGGCTTCCTCGGAAGGAAAGAAGGTCCGTCGAAAGCGGAAAACGAG
CAAGAGCTCCTCGTCCTCCTCCAGCTCGTCGGACAGCTCAGACAGCAGCA
GCGAATCGGGCTCCTCATCCGAATCAGACTCGAGCAGCTCCAGTTCGGAT
TCGGACGACGAGGAAGGCAGCTCGTCAGACTCCAGTGGAAGTGGCTCGGA
CAGCGACAGCAGCGAGGATCAAAAGCAGGGAGCTCCACAAAAAAAGAAAA
AACGAGCCGGGAGTTCACCTGAATCTTCTGACGATCAAGAGTAATCAAGA
GACCGATTTGTGGTCTGTAGTATGTAGCTTTACTAGTTTAGTTTTCCCAC
ACTTACACCGAAAATGAACATACTTTTGGTACTGTATTGTTTATATTTTA
ATGCTCCCGAAAAAAAAAAAAAAAA
RE18415.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 19:07:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5516-RA | 904 | CG5516-RA | 1..808 | 1..808 | 4025 | 99.8 | Plus |
CG5516.a | 751 | CG5516.a | 32..751 | 89..808 | 3600 | 100 | Plus |
CG32856-RA | 650 | CG32856-RA | 566..650 | 808..724 | 425 | 100 | Minus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:59:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3R | 27901430 | chr3R | 11788761..11789360 | 209..808 | 3000 | 100 | Plus |
chr3R | 27901430 | chr3R | 11788486..11788695 | 1..210 | 1035 | 99.5 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:39:30 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:59:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15964163..15964762 | 209..808 | 3000 | 100 | Plus |
3R | 32079331 | 3R | 15963888..15964097 | 1..210 | 1035 | 99.5 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:38:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 31820162 | 3R | 15704994..15705593 | 209..808 | 3000 | 100 | Plus |
3R | 31820162 | 3R | 15704719..15704928 | 1..210 | 1035 | 99.5 | Plus |
Blast to na_te.dros performed on 2019-03-16 11:59:31 has no hits.
RE18415.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:00:37 Download gff for
RE18415.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3R | 11788486..11788695 | 1..210 | 99 | -> | Plus |
chr3R | 11788763..11789360 | 211..809 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:59:38 Download gff for
RE18415.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5516-RA | 1..531 | 164..694 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:51:10 Download gff for
RE18415.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5516-RB | 1..531 | 164..694 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 12:43:47 Download gff for
RE18415.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5516-RA | 1..531 | 164..694 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:43:48 Download gff for
RE18415.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5516-RA | 1..531 | 164..694 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:32:51 Download gff for
RE18415.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5516-RA | 1..531 | 164..694 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:28:52 Download gff for
RE18415.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5516-RA | 1..803 | 1..803 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:51:10 Download gff for
RE18415.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5516-RA | 7..813 | 1..807 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:43:47 Download gff for
RE18415.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5516-RA | 7..813 | 1..807 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:43:48 Download gff for
RE18415.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5516-RA | 1..803 | 1..803 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:32:51 Download gff for
RE18415.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5516-RA | 5..811 | 1..807 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:00:37 Download gff for
RE18415.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15963888..15964097 | 1..210 | 99 | -> | Plus |
3R | 15964165..15964762 | 211..809 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:00:37 Download gff for
RE18415.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15963888..15964097 | 1..210 | 99 | -> | Plus |
3R | 15964165..15964762 | 211..809 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:00:37 Download gff for
RE18415.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15963888..15964097 | 1..210 | 99 | -> | Plus |
3R | 15964165..15964762 | 211..809 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:43:47 Download gff for
RE18415.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11789610..11789819 | 1..210 | 99 | -> | Plus |
arm_3R | 11789887..11790484 | 211..809 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:16:05 Download gff for
RE18415.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15704719..15704928 | 1..210 | 99 | -> | Plus |
3R | 15704996..15705593 | 211..809 | 99 | | Plus |
RE18415.hyp Sequence
Translation from 0 to 693
> RE18415.hyp
ICEVYNFQWTIANVTKKIIKNIFDTHFSQFFHPATLVSTHIKISSQQRLL
ECFRMTLVGLAARKLAQKKRSAKQAADFPNGIRCQKCLQIGHWSYECKEK
RKYVHRSSRTKQLSKRMSQKEADAPKNQVEEHSEVASSEGKKVRRKRKTS
KSSSSSSSSSDSSDSSSESGSSSESDSSSSSSDSDDEEGSSSDSSGSGSD
SDSSEDQKQGAPQKKKKRAGSSPESSDDQE*
RE18415.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:19:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5516-PB | 176 | CG5516-PB | 1..176 | 55..230 | 873 | 100 | Plus |
CG5516-PA | 176 | CG5516-PA | 1..176 | 55..230 | 873 | 100 | Plus |
CG3918-PA | 321 | CG3918-PA | 145..281 | 98..228 | 179 | 36 | Plus |
PNUTS-PA | 628 | CG33526-PA | 282..415 | 105..226 | 161 | 36.5 | Plus |
PNUTS-PB | 628 | CG33526-PB | 282..415 | 105..226 | 161 | 36.5 | Plus |
PNUTS-PA | 628 | CG33526-PA | 327..448 | 106..226 | 157 | 36.6 | Plus |
PNUTS-PA | 628 | CG33526-PA | 279..392 | 114..226 | 154 | 37.7 | Plus |
PNUTS-PA | 628 | CG33526-PA | 281..422 | 98..230 | 152 | 31.7 | Plus |
RE18415.pep Sequence
Translation from 163 to 693
> RE18415.pep
MTLVGLAARKLAQKKRSAKQAADFPNGIRCQKCLQIGHWSYECKEKRKYV
HRSSRTKQLSKRMSQKEADAPKNQVEEHSEVASSEGKKVRRKRKTSKSSS
SSSSSSDSSDSSSESGSSSESDSSSSSSDSDDEEGSSSDSSGSGSDSDSS
EDQKQGAPQKKKKRAGSSPESSDDQE*
RE18415.pep Blast Records
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:07:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5516-PB | 176 | CG5516-PB | 1..176 | 1..176 | 873 | 100 | Plus |
CG5516-PA | 176 | CG5516-PA | 1..176 | 1..176 | 873 | 100 | Plus |
CG3918-PA | 321 | CG3918-PA | 145..281 | 44..174 | 179 | 36 | Plus |
PNUTS-PA | 628 | CG33526-PA | 282..415 | 51..172 | 161 | 36.5 | Plus |
PNUTS-PB | 628 | CG33526-PB | 282..415 | 51..172 | 161 | 36.5 | Plus |
CG5808-PA | 653 | CG5808-PA | 521..646 | 44..172 | 161 | 36.2 | Plus |
PNUTS-PE | 1135 | CG33526-PE | 282..415 | 51..172 | 161 | 36.5 | Plus |
PNUTS-PD | 1135 | CG33526-PD | 282..415 | 51..172 | 161 | 36.5 | Plus |
PNUTS-PA | 628 | CG33526-PA | 327..448 | 52..172 | 157 | 36.6 | Plus |
PNUTS-PB | 628 | CG33526-PB | 327..448 | 52..172 | 157 | 36.6 | Plus |
PNUTS-PE | 1135 | CG33526-PE | 327..448 | 52..172 | 157 | 36.6 | Plus |
PNUTS-PD | 1135 | CG33526-PD | 327..448 | 52..172 | 157 | 36.6 | Plus |
CG6066-PA | 463 | CG6066-PA | 206..318 | 59..172 | 157 | 36.8 | Plus |
RnpS1-PA | 374 | CG16788-PA | 12..117 | 65..171 | 156 | 43.6 | Plus |
PNUTS-PA | 628 | CG33526-PA | 279..392 | 60..172 | 154 | 37.7 | Plus |
PNUTS-PB | 628 | CG33526-PB | 279..392 | 60..172 | 154 | 37.7 | Plus |
PNUTS-PE | 1135 | CG33526-PE | 279..392 | 60..172 | 154 | 37.7 | Plus |
PNUTS-PD | 1135 | CG33526-PD | 279..392 | 60..172 | 154 | 37.7 | Plus |
PNUTS-PA | 628 | CG33526-PA | 281..422 | 44..176 | 152 | 31.7 | Plus |
PNUTS-PB | 628 | CG33526-PB | 281..422 | 44..176 | 152 | 31.7 | Plus |
PNUTS-PE | 1135 | CG33526-PE | 281..422 | 44..176 | 152 | 31.7 | Plus |
PNUTS-PD | 1135 | CG33526-PD | 281..422 | 44..176 | 152 | 31.7 | Plus |
Mur89F-PC | 2158 | CG4090-PC | 599..721 | 53..173 | 151 | 33.1 | Plus |
Mur89F-PB | 2159 | CG4090-PB | 599..721 | 53..173 | 151 | 33.1 | Plus |
BOD1-PC | 1109 | CG5514-PC | 598..723 | 44..172 | 148 | 32.6 | Plus |
BOD1-PA | 1109 | CG5514-PA | 598..723 | 44..172 | 148 | 32.6 | Plus |
BOD1-PD | 1150 | CG5514-PD | 598..723 | 44..172 | 148 | 32.6 | Plus |
BOD1-PB | 1150 | CG5514-PB | 598..723 | 44..172 | 148 | 32.6 | Plus |
BOD1-PE | 1151 | CG5514-PE | 598..723 | 44..172 | 148 | 32.6 | Plus |
CG12877-PC | 991 | CG12877-PC | 197..333 | 44..176 | 147 | 34.3 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 23:33:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA18942-PA | 181 | GA18942-PA | 1..73 | 1..74 | 335 | 82.4 | Plus |