BDGP Sequence Production Resources |
Search the DGRC for RE18450
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 184 |
Well: | 50 |
Vector: | pFlc-1 |
Associated Gene/Transcript | l(2)37Bb-RA |
Protein status: | RE18450.pep: gold |
Preliminary Size: | 1596 |
Sequenced Size: | 1714 |
Gene | Date | Evidence |
---|---|---|
CG10655 | 2002-01-01 | Sim4 clustering to Release 2 |
CG10655 | 2002-04-21 | Blastp of sequenced clone |
CG10655 | 2003-01-01 | Sim4 clustering to Release 3 |
l(2)37Bb | 2008-04-29 | Release 5.5 accounting |
l(2)37Bb | 2008-08-15 | Release 5.9 accounting |
l(2)37Bb | 2008-12-18 | 5.12 accounting |
1714 bp (1714 high quality bases) assembled on 2002-04-21
GenBank Submission: AY113419
> RE18450.complete GATATCGATACTCCGATAACATCGCACGTTATTACTATTACAAAATAACA CAAAATAAAAAATTAATACGGAATATGAATTAAATTAAAATTAAAGAGAA TAAAATGTTGCGGTACAGACAAGTGGTGGGTCTCCTTCAGCGCCGTAATT TCTCGGCCGGAGCAACGAGCAATGGAAGTGGATCTTCCGGGGGCGACAAA TCCGGCGAAGACCTGCACCCCATACGACGAACACTCCGTTTGCTCGGGAA CGATATGCGCAAAGTTAAGGAGTTCTTTGTACCAAAGGAACCGGAGACCG AGAAAGTTCCCATTCCGACACAGAGCCAGTTTCACTTTTCAGGGGAGCGC GACAAGAGCAAGGAAGCCACTGTGCCGGATGACTTCCAGACCCATTGCGA TGTGCTCATCATTGGCGGCGGTGGAGTGGGCAGCTCCATCGCCTATTGGC TGAAGGAGAAGGCCCGCGACGGTCTTAACGTTGTGGTGGTCGAGAAGGAT GACACGTATGCCCAGTCAGCCACGCGTGTTTCGGTGGGCGGTCTTTGTCA GCAATTCTCCCTGCCCGAAAACATCCAAATGTCACTATTTGCCGCAGACT TCCTGCGAAGCGCAAGAAAACACTTTGGCGAGGAAGTGCCTCTCCAGTTT ACGCCCCATGGCCATCTGATGCTCGCTGGCGAGGAGCACGCGGAAAGCCT GAAGCGCTCCTCTCAGCTACAAAACGAACTGGGTGCCCGAAATGAACTTC TCACTGCAGATCGACTGACTGCCAGATTCCCCTGGCTAAACACCAAGGGC ATCGCTTTGGGCTGTCTTGGTCTGGAAAAAGAGGGCTGGTTTAATCCGTT GGCACTTCTGAGCAATTTCCGACGGTCAGCCAGTGGCTACGGCGCCCATT TTATCAGTGGCCAGGTGGTCGACTTCGAGTTCAAATCCCAAACGGACATT TCTGTTGTCACAGATCTTGGTTCCAACGAGGGTGCCTACACGGGCTTGGA AAAAGCGGTCATCCAACTGCCCGATGGTACGCGACGCACTTGCAAGTTCG CCCTGTGTGTAATAAGCGCCGGTGCTAGTTCCGAACAAATCGCGCGATTA GCAAGGATAGGCGTGGGTCCAGGAATACTTCGGGTTCCGCTGCCCATCAA CGCACGCAAGCGATACATGTACGCCATCAACTCGCAGGCCCAAAGTGCAC CCGGAATGAATATGCCCATGACAATAGATCCGTCGGGCATCTTTATTCGC AGAGATGGCCTGGGCGGCAACTATATTTGCGTGCAAGATTCGACGGAAGA GTATAATAGCGCGATGATTGATCCGCAATATTTCGCCCAGCACATCAGAC CCCATTTGTATAATAGAATTCCCGTTCTTGGAGAAGCCCAAGTGGTGGAT AGCTGGGCGGGCTGCTATGATCATAACGTATACGACGAGAACGGCATTTT AGGAGCTCACCCGTACTACAACAATCTGTACCTAGCCACCGGTTTTAGCG GACACGGAGTACAGCAATCTCTGGCCGTGGGCCGAGCCATATCCGAGCTG ATCATGGATGGTCAGTTCAGAACCATCGACCTCTCTCGTCTGAGCTTCGA CCGGCTGATTGTTGACCAACCTATGTTCGAGTTGAATAATGTATTAAGCT AGAATTGTTGATGGTGCATTAAAACTAAATGCAACAATTTAATTAATGAA AAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
l(2)37Bb-RA | 1712 | l(2)37Bb-RA | 15..1712 | 1..1698 | 8490 | 100 | Plus |
CG10470-RA | 769 | CG10470-RA | 679..769 | 1700..1610 | 455 | 100 | Minus |
CG10470.a | 798 | CG10470.a | 708..798 | 1700..1610 | 455 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 19048460..19049651 | 507..1698 | 99 | <- | Minus |
chr2L | 19049714..19050113 | 107..506 | 100 | == | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(2)37Bb-RA | 1..1548 | 105..1652 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(2)37Bb-RA | 1..1548 | 105..1652 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(2)37Bb-RA | 1..1548 | 105..1652 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(2)37Bb-RA | 1..1548 | 105..1652 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(2)37Bb-RA | 1..1548 | 105..1652 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(2)37Bb-RA | 5..1702 | 1..1698 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(2)37Bb-RA | 5..1702 | 1..1698 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(2)37Bb-RA | 11..1708 | 1..1698 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(2)37Bb-RA | 5..1702 | 1..1698 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(2)37Bb-RA | 11..1708 | 1..1698 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 19049843..19051034 | 507..1698 | 100 | <- | Minus |
2L | 19051097..19051602 | 1..506 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 19049843..19051034 | 507..1698 | 100 | <- | Minus |
2L | 19051097..19051602 | 1..506 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 19049843..19051034 | 507..1698 | 100 | <- | Minus |
2L | 19051097..19051602 | 1..506 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 19049843..19051034 | 507..1698 | 100 | <- | Minus |
arm_2L | 19051097..19051602 | 1..506 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 19049843..19051034 | 507..1698 | 100 | <- | Minus |
2L | 19051097..19051602 | 1..506 | 100 | Minus |
Translation from 104 to 1651
> RE18450.pep MLRYRQVVGLLQRRNFSAGATSNGSGSSGGDKSGEDLHPIRRTLRLLGND MRKVKEFFVPKEPETEKVPIPTQSQFHFSGERDKSKEATVPDDFQTHCDV LIIGGGGVGSSIAYWLKEKARDGLNVVVVEKDDTYAQSATRVSVGGLCQQ FSLPENIQMSLFAADFLRSARKHFGEEVPLQFTPHGHLMLAGEEHAESLK RSSQLQNELGARNELLTADRLTARFPWLNTKGIALGCLGLEKEGWFNPLA LLSNFRRSASGYGAHFISGQVVDFEFKSQTDISVVTDLGSNEGAYTGLEK AVIQLPDGTRRTCKFALCVISAGASSEQIARLARIGVGPGILRVPLPINA RKRYMYAINSQAQSAPGMNMPMTIDPSGIFIRRDGLGGNYICVQDSTEEY NSAMIDPQYFAQHIRPHLYNRIPVLGEAQVVDSWAGCYDHNVYDENGILG AHPYYNNLYLATGFSGHGVQQSLAVGRAISELIMDGQFRTIDLSRLSFDR LIVDQPMFELNNVLS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF15215-PA | 510 | GF15215-PA | 1..510 | 1..515 | 2012 | 73.3 | Plus |
Dana\GF11066-PA | 440 | GF11066-PA | 26..440 | 92..513 | 1044 | 49.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG21658-PA | 515 | GG21658-PA | 1..515 | 1..515 | 2387 | 88.2 | Plus |
Dere\GG23218-PA | 440 | GG23218-PA | 26..440 | 92..513 | 1056 | 49.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH21750-PA | 444 | GH21750-PA | 16..444 | 73..513 | 1126 | 49.8 | Plus |
Dgri\GH10833-PA | 581 | GH10833-PA | 1..272 | 1..279 | 915 | 65.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
l(2)37Bb-PA | 515 | CG10655-PA | 1..515 | 1..515 | 2679 | 100 | Plus |
CG3270-PA | 440 | CG3270-PA | 32..440 | 98..513 | 1047 | 49.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI17347-PA | 511 | GI17347-PA | 1..508 | 1..511 | 1592 | 61 | Plus |
Dmoj\GI19297-PA | 440 | GI19297-PA | 31..440 | 92..513 | 1093 | 50.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL25633-PA | 518 | GL25633-PA | 1..518 | 1..515 | 1983 | 73.5 | Plus |
Dper\GL11115-PA | 254 | GL11115-PA | 22..254 | 288..513 | 615 | 49.4 | Plus |
Dper\GL11114-PA | 170 | GL11114-PA | 27..168 | 92..231 | 354 | 54.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA10471-PA | 518 | GA10471-PA | 1..518 | 1..515 | 1995 | 74.1 | Plus |
Dpse\GA17085-PA | 441 | GA17085-PA | 27..441 | 92..513 | 1080 | 50.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM17037-PA | 515 | GM17037-PA | 1..515 | 1..515 | 2561 | 94.6 | Plus |
Dsec\GM20893-PA | 440 | GM20893-PA | 26..440 | 92..513 | 1035 | 48.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD21785-PA | 515 | GD21785-PA | 1..515 | 1..515 | 2575 | 95.1 | Plus |
Dsim\GD17890-PA | 214 | GD17890-PA | 1..214 | 307..513 | 590 | 50.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ16110-PA | 510 | GJ16110-PA | 1..507 | 1..511 | 1670 | 63.8 | Plus |
Dvir\GJ22174-PA | 441 | GJ22174-PA | 24..441 | 84..513 | 1122 | 50.6 | Plus |
Translation from 104 to 1651
> RE18450.hyp MLRYRQVVGLLQRRNFSAGATSNGSGSSGGDKSGEDLHPIRRTLRLLGND MRKVKEFFVPKEPETEKVPIPTQSQFHFSGERDKSKEATVPDDFQTHCDV LIIGGGGVGSSIAYWLKEKARDGLNVVVVEKDDTYAQSATRVSVGGLCQQ FSLPENIQMSLFAADFLRSARKHFGEEVPLQFTPHGHLMLAGEEHAESLK RSSQLQNELGARNELLTADRLTARFPWLNTKGIALGCLGLEKEGWFNPLA LLSNFRRSASGYGAHFISGQVVDFEFKSQTDISVVTDLGSNEGAYTGLEK AVIQLPDGTRRTCKFALCVISAGASSEQIARLARIGVGPGILRVPLPINA RKRYMYAINSQAQSAPGMNMPMTIDPSGIFIRRDGLGGNYICVQDSTEEY NSAMIDPQYFAQHIRPHLYNRIPVLGEAQVVDSWAGCYDHNVYDENGILG AHPYYNNLYLATGFSGHGVQQSLAVGRAISELIMDGQFRTIDLSRLSFDR LIVDQPMFELNNVLS*