Clone RE18450 Report

Search the DGRC for RE18450

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:184
Well:50
Vector:pFlc-1
Associated Gene/Transcriptl(2)37Bb-RA
Protein status:RE18450.pep: gold
Preliminary Size:1596
Sequenced Size:1714

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10655 2002-01-01 Sim4 clustering to Release 2
CG10655 2002-04-21 Blastp of sequenced clone
CG10655 2003-01-01 Sim4 clustering to Release 3
l(2)37Bb 2008-04-29 Release 5.5 accounting
l(2)37Bb 2008-08-15 Release 5.9 accounting
l(2)37Bb 2008-12-18 5.12 accounting

Clone Sequence Records

RE18450.complete Sequence

1714 bp (1714 high quality bases) assembled on 2002-04-21

GenBank Submission: AY113419

> RE18450.complete
GATATCGATACTCCGATAACATCGCACGTTATTACTATTACAAAATAACA
CAAAATAAAAAATTAATACGGAATATGAATTAAATTAAAATTAAAGAGAA
TAAAATGTTGCGGTACAGACAAGTGGTGGGTCTCCTTCAGCGCCGTAATT
TCTCGGCCGGAGCAACGAGCAATGGAAGTGGATCTTCCGGGGGCGACAAA
TCCGGCGAAGACCTGCACCCCATACGACGAACACTCCGTTTGCTCGGGAA
CGATATGCGCAAAGTTAAGGAGTTCTTTGTACCAAAGGAACCGGAGACCG
AGAAAGTTCCCATTCCGACACAGAGCCAGTTTCACTTTTCAGGGGAGCGC
GACAAGAGCAAGGAAGCCACTGTGCCGGATGACTTCCAGACCCATTGCGA
TGTGCTCATCATTGGCGGCGGTGGAGTGGGCAGCTCCATCGCCTATTGGC
TGAAGGAGAAGGCCCGCGACGGTCTTAACGTTGTGGTGGTCGAGAAGGAT
GACACGTATGCCCAGTCAGCCACGCGTGTTTCGGTGGGCGGTCTTTGTCA
GCAATTCTCCCTGCCCGAAAACATCCAAATGTCACTATTTGCCGCAGACT
TCCTGCGAAGCGCAAGAAAACACTTTGGCGAGGAAGTGCCTCTCCAGTTT
ACGCCCCATGGCCATCTGATGCTCGCTGGCGAGGAGCACGCGGAAAGCCT
GAAGCGCTCCTCTCAGCTACAAAACGAACTGGGTGCCCGAAATGAACTTC
TCACTGCAGATCGACTGACTGCCAGATTCCCCTGGCTAAACACCAAGGGC
ATCGCTTTGGGCTGTCTTGGTCTGGAAAAAGAGGGCTGGTTTAATCCGTT
GGCACTTCTGAGCAATTTCCGACGGTCAGCCAGTGGCTACGGCGCCCATT
TTATCAGTGGCCAGGTGGTCGACTTCGAGTTCAAATCCCAAACGGACATT
TCTGTTGTCACAGATCTTGGTTCCAACGAGGGTGCCTACACGGGCTTGGA
AAAAGCGGTCATCCAACTGCCCGATGGTACGCGACGCACTTGCAAGTTCG
CCCTGTGTGTAATAAGCGCCGGTGCTAGTTCCGAACAAATCGCGCGATTA
GCAAGGATAGGCGTGGGTCCAGGAATACTTCGGGTTCCGCTGCCCATCAA
CGCACGCAAGCGATACATGTACGCCATCAACTCGCAGGCCCAAAGTGCAC
CCGGAATGAATATGCCCATGACAATAGATCCGTCGGGCATCTTTATTCGC
AGAGATGGCCTGGGCGGCAACTATATTTGCGTGCAAGATTCGACGGAAGA
GTATAATAGCGCGATGATTGATCCGCAATATTTCGCCCAGCACATCAGAC
CCCATTTGTATAATAGAATTCCCGTTCTTGGAGAAGCCCAAGTGGTGGAT
AGCTGGGCGGGCTGCTATGATCATAACGTATACGACGAGAACGGCATTTT
AGGAGCTCACCCGTACTACAACAATCTGTACCTAGCCACCGGTTTTAGCG
GACACGGAGTACAGCAATCTCTGGCCGTGGGCCGAGCCATATCCGAGCTG
ATCATGGATGGTCAGTTCAGAACCATCGACCTCTCTCGTCTGAGCTTCGA
CCGGCTGATTGTTGACCAACCTATGTTCGAGTTGAATAATGTATTAAGCT
AGAATTGTTGATGGTGCATTAAAACTAAATGCAACAATTTAATTAATGAA
AAAAAAAAAAAAAA

RE18450.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:14:08
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)37Bb-RA 1712 l(2)37Bb-RA 15..1712 1..1698 8490 100 Plus
CG10470-RA 769 CG10470-RA 679..769 1700..1610 455 100 Minus
CG10470.a 798 CG10470.a 708..798 1700..1610 455 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:10:24
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 19048460..19049652 1698..506 5950 99.9 Minus
chr2L 23010047 chr2L 19049714..19050219 506..1 2530 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:39:31 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:10:23
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19049841..19051035 1700..506 5975 100 Minus
2L 23513712 2L 19051097..19051602 506..1 2530 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:44:24
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19049841..19051035 1700..506 5975 100 Minus
2L 23513712 2L 19051097..19051602 506..1 2530 100 Minus
Blast to na_te.dros performed on 2019-03-15 20:10:23 has no hits.

RE18450.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:11:06 Download gff for RE18450.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 19048460..19049651 507..1698 99 <- Minus
chr2L 19049714..19050113 107..506 100 == Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:59:39 Download gff for RE18450.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)37Bb-RA 1..1548 105..1652 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:00:12 Download gff for RE18450.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)37Bb-RA 1..1548 105..1652 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:07:51 Download gff for RE18450.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)37Bb-RA 1..1548 105..1652 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:53:28 Download gff for RE18450.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)37Bb-RA 1..1548 105..1652 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:17:18 Download gff for RE18450.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)37Bb-RA 1..1548 105..1652 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:41:10 Download gff for RE18450.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)37Bb-RA 5..1702 1..1698 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:00:11 Download gff for RE18450.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)37Bb-RA 5..1702 1..1698 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:07:51 Download gff for RE18450.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)37Bb-RA 11..1708 1..1698 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-04 17:07:19 Download gff for RE18450.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)37Bb-RA 5..1702 1..1698 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:17:18 Download gff for RE18450.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)37Bb-RA 11..1708 1..1698 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:11:06 Download gff for RE18450.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19049843..19051034 507..1698 100 <- Minus
2L 19051097..19051602 1..506 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:11:06 Download gff for RE18450.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19049843..19051034 507..1698 100 <- Minus
2L 19051097..19051602 1..506 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:11:06 Download gff for RE18450.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19049843..19051034 507..1698 100 <- Minus
2L 19051097..19051602 1..506 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:07:51 Download gff for RE18450.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19049843..19051034 507..1698 100 <- Minus
arm_2L 19051097..19051602 1..506 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:25:40 Download gff for RE18450.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19049843..19051034 507..1698 100 <- Minus
2L 19051097..19051602 1..506 100   Minus

RE18450.pep Sequence

Translation from 104 to 1651

> RE18450.pep
MLRYRQVVGLLQRRNFSAGATSNGSGSSGGDKSGEDLHPIRRTLRLLGND
MRKVKEFFVPKEPETEKVPIPTQSQFHFSGERDKSKEATVPDDFQTHCDV
LIIGGGGVGSSIAYWLKEKARDGLNVVVVEKDDTYAQSATRVSVGGLCQQ
FSLPENIQMSLFAADFLRSARKHFGEEVPLQFTPHGHLMLAGEEHAESLK
RSSQLQNELGARNELLTADRLTARFPWLNTKGIALGCLGLEKEGWFNPLA
LLSNFRRSASGYGAHFISGQVVDFEFKSQTDISVVTDLGSNEGAYTGLEK
AVIQLPDGTRRTCKFALCVISAGASSEQIARLARIGVGPGILRVPLPINA
RKRYMYAINSQAQSAPGMNMPMTIDPSGIFIRRDGLGGNYICVQDSTEEY
NSAMIDPQYFAQHIRPHLYNRIPVLGEAQVVDSWAGCYDHNVYDENGILG
AHPYYNNLYLATGFSGHGVQQSLAVGRAISELIMDGQFRTIDLSRLSFDR
LIVDQPMFELNNVLS*

RE18450.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:44:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15215-PA 510 GF15215-PA 1..510 1..515 2012 73.3 Plus
Dana\GF11066-PA 440 GF11066-PA 26..440 92..513 1044 49.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:44:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21658-PA 515 GG21658-PA 1..515 1..515 2387 88.2 Plus
Dere\GG23218-PA 440 GG23218-PA 26..440 92..513 1056 49.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:44:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21750-PA 444 GH21750-PA 16..444 73..513 1126 49.8 Plus
Dgri\GH10833-PA 581 GH10833-PA 1..272 1..279 915 65.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:05:14
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)37Bb-PA 515 CG10655-PA 1..515 1..515 2679 100 Plus
CG3270-PA 440 CG3270-PA 32..440 98..513 1047 49.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:44:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17347-PA 511 GI17347-PA 1..508 1..511 1592 61 Plus
Dmoj\GI19297-PA 440 GI19297-PA 31..440 92..513 1093 50.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:44:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25633-PA 518 GL25633-PA 1..518 1..515 1983 73.5 Plus
Dper\GL11115-PA 254 GL11115-PA 22..254 288..513 615 49.4 Plus
Dper\GL11114-PA 170 GL11114-PA 27..168 92..231 354 54.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:44:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10471-PA 518 GA10471-PA 1..518 1..515 1995 74.1 Plus
Dpse\GA17085-PA 441 GA17085-PA 27..441 92..513 1080 50.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:44:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17037-PA 515 GM17037-PA 1..515 1..515 2561 94.6 Plus
Dsec\GM20893-PA 440 GM20893-PA 26..440 92..513 1035 48.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:44:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21785-PA 515 GD21785-PA 1..515 1..515 2575 95.1 Plus
Dsim\GD17890-PA 214 GD17890-PA 1..214 307..513 590 50.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:44:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16110-PA 510 GJ16110-PA 1..507 1..511 1670 63.8 Plus
Dvir\GJ22174-PA 441 GJ22174-PA 24..441 84..513 1122 50.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:44:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24840-PA 518 GK24840-PA 1..518 1..515 1727 63.9 Plus
Dwil\GK23230-PA 448 GK23230-PA 29..448 89..513 1032 47.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:44:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12678-PA 515 GE12678-PA 1..515 1..515 2446 88.3 Plus
Dyak\GE19071-PA 440 GE19071-PA 26..440 92..513 1030 48.8 Plus

RE18450.hyp Sequence

Translation from 104 to 1651

> RE18450.hyp
MLRYRQVVGLLQRRNFSAGATSNGSGSSGGDKSGEDLHPIRRTLRLLGND
MRKVKEFFVPKEPETEKVPIPTQSQFHFSGERDKSKEATVPDDFQTHCDV
LIIGGGGVGSSIAYWLKEKARDGLNVVVVEKDDTYAQSATRVSVGGLCQQ
FSLPENIQMSLFAADFLRSARKHFGEEVPLQFTPHGHLMLAGEEHAESLK
RSSQLQNELGARNELLTADRLTARFPWLNTKGIALGCLGLEKEGWFNPLA
LLSNFRRSASGYGAHFISGQVVDFEFKSQTDISVVTDLGSNEGAYTGLEK
AVIQLPDGTRRTCKFALCVISAGASSEQIARLARIGVGPGILRVPLPINA
RKRYMYAINSQAQSAPGMNMPMTIDPSGIFIRRDGLGGNYICVQDSTEEY
NSAMIDPQYFAQHIRPHLYNRIPVLGEAQVVDSWAGCYDHNVYDENGILG
AHPYYNNLYLATGFSGHGVQQSLAVGRAISELIMDGQFRTIDLSRLSFDR
LIVDQPMFELNNVLS*

RE18450.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:28:38
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)37Bb-PA 515 CG10655-PA 1..515 1..515 2679 100 Plus
CG3270-PA 440 CG3270-PA 32..440 98..513 1047 49.5 Plus