Clone RE18459 Report

Search the DGRC for RE18459

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:184
Well:59
Vector:pFlc-1
Associated Gene/TranscriptCG10092-RA
Protein status:RE18459.pep: gold
Preliminary Size:1716
Sequenced Size:1910

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10092 2002-01-01 Sim4 clustering to Release 2
CG10092 2002-02-26 Blastp of sequenced clone
CG10092 2003-01-01 Sim4 clustering to Release 3
CG10092 2008-04-29 Release 5.5 accounting
CG10092 2008-08-15 Release 5.9 accounting
CG10092 2008-12-18 5.12 accounting

Clone Sequence Records

RE18459.complete Sequence

1910 bp (1910 high quality bases) assembled on 2002-02-26

GenBank Submission: AY089591

> RE18459.complete
ACCGTTGGATTTTTCGGCGGCTCATGGAACGGCCACACATTGGCTTGTTT
ACCTATAAAATCTGTAATGCATTGAAAGAACTAACGGAAAGGATGATTCG
CTTACGGCAAGCAATTTGTGAGCAGCTGCCGCATCTCAAGAATGCCTGCT
ATGCCCTGGAGGTGCCTGTCAAGAAACAACAGCTACAGAATAGCCGACGT
CCAACTGTGGAGTGGATTCTGCCCTCTGCGTTTGCGCAACAGGAGGTGGA
ACTACTGGACTCATTGAAGAAGCGCAGATTCGAGGCCTATGTGGAAAACG
TTCGGATTGTACCTAGCGCTGGGCGCAGTGCAGCCAAAATCGAGTTTCAG
CTGCAGCCACAGGTCTTTGTAGAACAGCTCCTCCAAACTAAAGAGATTGC
TTTACATCCTTCGCCCTTTGCTGCGGAACACATAGTGGTTGAGTACAGCT
CGCCCAACATAGCCAAACCCTTCCACGTGGGCCACCTGCGCTCCACAATC
ATCGGCAATGTTCTGGCCAACCTGCATGAGCATTTGGGCTACCGCACAAC
ACGGTTGAACTATCTGGGGGATTGGGGCACGCAATTTGGACTACTGGTAT
TGGGAGTTCAACTGCTGAATGTAAGCGACAAAGAGATGCAACTATCCCCA
ATAGAAACGCTGTACAAATCCTACGTGGCCGCCAACAAGGCTGCTGAACA
AAGACCTGAAATCGCGCAACAGGCGAGGGACCTCTTCGCCGCCTTGGAAG
GAGGAACGGATAAATCAATGGCCAAGAAATGGCAGCAATACAGAAACTAC
ACTATAGAGGATCTATCCAAAGTCTATAACAGATTGGGCGTTCACTTCGA
TAGCTACGAATGGGAATCCCAGTACTCCCAGCAGCAAATTCAGGATGTTC
TGGACAAACTGCGAAGCGCTGGACTCCTCCAGCCGGAGCACGATGGTCGT
GAGATTGTCGTGGTGGACGGCCGACGCATTCCTGTGATCAAGAGTAATGG
ATCCACTTTGTACCTGGCCAGGGACATAGCTGCCCTGCTGGAGAGACTCT
CCAGGTTCCAGTTCTCACGCTTGCTCTACGTCGTGGACAATGGTCAAGCG
GATCATTTTAATGCCCTTTTTAAAACAACGGCAGCCCTGGATGACCGCCT
AAGTCTGGAACAGCTGCAACATGTGAAATTTGGACGCATTTATGGGATGA
GCACTCGTCAGGGAAAGGCAATCTTTCTAAAAGATGTCCTAGATGAAGCA
CGAGACATAATGCGGGAAAAGCGAAACATAAGTGCCACTACCAGAGAAAA
TTACAATCTGGATGATGAACATGTATGTGATATTTTGGGCGTGTCAGCCG
TCCTGGTCAATGTCCTTAAGCAGCGAAGGCAACGAGATCACGAGTTCAGC
TGGCAGCAGGCACTCCAAGTAAATGGTGACACAGGAATCAAGCTTCAATA
CACACACTGCCGCCTGCACAGTTTGCTGGATAATTTCCGAGATGTAGATC
TGGACGACATTAAGCCCGACTGGAAGCATTTCTCTACGGAGCCTGCGGAT
GCTTTGGATCTGCTCTACGCACTGGCACGTTTCGATCAAAGCGTTTGGCA
ATCGAAGGAACAACTGGAGGCTTGTGTCCTTGTCAACTATCTCTTTGGAT
TGTGCAATGCCACCAGTCAAGCGCTGAAAAGATTGCCTGTGAAACAAGAG
TCCAGCCTAGAGAAGCAACTCCAACGCCTGCTTCTTTTTCACGCTGCCAA
AAAAACACTGCGACACGGAATGGAGCTCCTTGGCCTGCGTCCACTGAACC
AAATGTAGACCAATTAGACCTAAGGCACCGCAGTTAACACAATTTATATT
TATTAAAACACTTCGCTATAAAATGCAGCCTAGTGTTGCAGATGCAAAAA
AAAAAAAAAA

RE18459.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:23:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG10092-RA 1943 CG10092-RA 49..1943 1..1895 9475 100 Plus
CG10092.a 2002 CG10092.a 71..1911 56..1896 9205 100 Plus
mRpS9-RA 1340 mRpS9-RA 1264..1340 1896..1820 385 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:11:11
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 3713360..3714524 123..1287 5825 100 Plus
chr3R 27901430 chr3R 3714586..3714952 1288..1654 1820 99.7 Plus
chr3R 27901430 chr3R 3715117..3715358 1654..1895 1195 99.6 Plus
chr3R 27901430 chr3R 3713231..3713300 56..125 350 100 Plus
chr3R 27901430 chr3R 3713107..3713161 1..55 275 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:39:32 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:11:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7887337..7888501 123..1287 5825 100 Plus
3R 32079331 3R 7888563..7888929 1288..1654 1835 100 Plus
3R 32079331 3R 7889095..7889337 1654..1896 1215 100 Plus
3R 32079331 3R 7887208..7887277 56..125 350 100 Plus
3R 32079331 3R 7887084..7887138 1..55 275 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:52:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 7628168..7629332 123..1287 5825 100 Plus
3R 31820162 3R 7629394..7629760 1288..1654 1835 100 Plus
3R 31820162 3R 7629926..7630168 1654..1896 1215 100 Plus
3R 31820162 3R 7628039..7628108 56..125 350 100 Plus
3R 31820162 3R 7627915..7627969 1..55 275 100 Plus
Blast to na_te.dros performed on 2019-03-15 20:11:10 has no hits.

RE18459.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:12:20 Download gff for RE18459.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 3715118..3715358 1655..1895 99   Plus
chr3R 3713107..3713161 1..55 100 -> Plus
chr3R 3713231..3713300 56..125 100 -> Plus
chr3R 3713363..3714524 126..1287 100 -> Plus
chr3R 3714586..3714952 1288..1654 99 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:59:40 Download gff for RE18459.complete
Subject Subject Range Query Range Percent Splice Strand
CG10092-RA 1..1785 24..1808 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:34:07 Download gff for RE18459.complete
Subject Subject Range Query Range Percent Splice Strand
CG10092-RA 1..1785 24..1808 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:07:55 Download gff for RE18459.complete
Subject Subject Range Query Range Percent Splice Strand
CG10092-RA 1..1785 24..1808 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:06:21 Download gff for RE18459.complete
Subject Subject Range Query Range Percent Splice Strand
CG10092-RA 1..1785 24..1808 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:17:19 Download gff for RE18459.complete
Subject Subject Range Query Range Percent Splice Strand
CG10092-RA 1..1785 24..1808 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:59:53 Download gff for RE18459.complete
Subject Subject Range Query Range Percent Splice Strand
CG10092-RA 1..1895 1..1895 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:34:07 Download gff for RE18459.complete
Subject Subject Range Query Range Percent Splice Strand
CG10092-RA 1..1895 1..1895 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:07:55 Download gff for RE18459.complete
Subject Subject Range Query Range Percent Splice Strand
CG10092-RA 40..1934 1..1895 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:06:21 Download gff for RE18459.complete
Subject Subject Range Query Range Percent Splice Strand
CG10092-RA 1..1895 1..1895 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:17:19 Download gff for RE18459.complete
Subject Subject Range Query Range Percent Splice Strand
CG10092-RA 40..1934 1..1895 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:12:20 Download gff for RE18459.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7887340..7888501 126..1287 100 -> Plus
3R 7888563..7888929 1288..1654 100 -> Plus
3R 7889096..7889336 1655..1895 100   Plus
3R 7887084..7887138 1..55 100 -> Plus
3R 7887208..7887277 56..125 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:12:20 Download gff for RE18459.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7887340..7888501 126..1287 100 -> Plus
3R 7888563..7888929 1288..1654 100 -> Plus
3R 7889096..7889336 1655..1895 100   Plus
3R 7887084..7887138 1..55 100 -> Plus
3R 7887208..7887277 56..125 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:12:20 Download gff for RE18459.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7887340..7888501 126..1287 100 -> Plus
3R 7888563..7888929 1288..1654 100 -> Plus
3R 7889096..7889336 1655..1895 100   Plus
3R 7887084..7887138 1..55 100 -> Plus
3R 7887208..7887277 56..125 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:07:55 Download gff for RE18459.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3712806..3712860 1..55 100 -> Plus
arm_3R 3712930..3712999 56..125 100 -> Plus
arm_3R 3713062..3714223 126..1287 100 -> Plus
arm_3R 3714285..3714651 1288..1654 100 -> Plus
arm_3R 3714818..3715058 1655..1895 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:40:11 Download gff for RE18459.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7628171..7629332 126..1287 100 -> Plus
3R 7629394..7629760 1288..1654 100 -> Plus
3R 7629927..7630167 1655..1895 100   Plus
3R 7627915..7627969 1..55 100 -> Plus
3R 7628039..7628108 56..125 100 -> Plus

RE18459.hyp Sequence

Translation from 2 to 1807

> RE18459.hyp
RWIFRRLMERPHIGLFTYKICNALKELTERMIRLRQAICEQLPHLKNACY
ALEVPVKKQQLQNSRRPTVEWILPSAFAQQEVELLDSLKKRRFEAYVENV
RIVPSAGRSAAKIEFQLQPQVFVEQLLQTKEIALHPSPFAAEHIVVEYSS
PNIAKPFHVGHLRSTIIGNVLANLHEHLGYRTTRLNYLGDWGTQFGLLVL
GVQLLNVSDKEMQLSPIETLYKSYVAANKAAEQRPEIAQQARDLFAALEG
GTDKSMAKKWQQYRNYTIEDLSKVYNRLGVHFDSYEWESQYSQQQIQDVL
DKLRSAGLLQPEHDGREIVVVDGRRIPVIKSNGSTLYLARDIAALLERLS
RFQFSRLLYVVDNGQADHFNALFKTTAALDDRLSLEQLQHVKFGRIYGMS
TRQGKAIFLKDVLDEARDIMREKRNISATTRENYNLDDEHVCDILGVSAV
LVNVLKQRRQRDHEFSWQQALQVNGDTGIKLQYTHCRLHSLLDNFRDVDL
DDIKPDWKHFSTEPADALDLLYALARFDQSVWQSKEQLEACVLVNYLFGL
CNATSQALKRLPVKQESSLEKQLQRLLLFHAAKKTLRHGMELLGLRPLNQ
M*

RE18459.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:59:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG10092-PB 594 CG10092-PB 1..594 8..601 3053 100 Plus
CG10092-PA 594 CG10092-PA 1..594 8..601 3053 100 Plus
Aats-arg-PA 665 CG9020-PA 190..665 136..601 462 29.2 Plus

RE18459.pep Sequence

Translation from 23 to 1807

> RE18459.pep
MERPHIGLFTYKICNALKELTERMIRLRQAICEQLPHLKNACYALEVPVK
KQQLQNSRRPTVEWILPSAFAQQEVELLDSLKKRRFEAYVENVRIVPSAG
RSAAKIEFQLQPQVFVEQLLQTKEIALHPSPFAAEHIVVEYSSPNIAKPF
HVGHLRSTIIGNVLANLHEHLGYRTTRLNYLGDWGTQFGLLVLGVQLLNV
SDKEMQLSPIETLYKSYVAANKAAEQRPEIAQQARDLFAALEGGTDKSMA
KKWQQYRNYTIEDLSKVYNRLGVHFDSYEWESQYSQQQIQDVLDKLRSAG
LLQPEHDGREIVVVDGRRIPVIKSNGSTLYLARDIAALLERLSRFQFSRL
LYVVDNGQADHFNALFKTTAALDDRLSLEQLQHVKFGRIYGMSTRQGKAI
FLKDVLDEARDIMREKRNISATTRENYNLDDEHVCDILGVSAVLVNVLKQ
RRQRDHEFSWQQALQVNGDTGIKLQYTHCRLHSLLDNFRDVDLDDIKPDW
KHFSTEPADALDLLYALARFDQSVWQSKEQLEACVLVNYLFGLCNATSQA
LKRLPVKQESSLEKQLQRLLLFHAAKKTLRHGMELLGLRPLNQM*

RE18459.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 23:02:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18177-PA 570 GF18177-PA 1..570 24..594 2420 78.7 Plus
Dana\GF16459-PA 666 GF16459-PA 188..666 126..594 483 29.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 23:02:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14252-PA 572 GG14252-PA 1..572 24..594 2724 90.6 Plus
Dere\GG19367-PA 664 GG19367-PA 186..664 126..594 452 28.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 23:02:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18567-PA 571 GH18567-PA 4..571 26..594 2204 73.7 Plus
Dgri\GH12545-PA 668 GH12545-PA 159..668 93..594 435 27 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:13:07
Subject Length Description Subject Range Query Range Score Percent Strand
ArgRS-m-PB 594 CG10092-PB 1..594 1..594 3053 100 Plus
ArgRS-m-PA 594 CG10092-PA 1..594 1..594 3053 100 Plus
ArgRS-PA 665 CG9020-PA 190..665 129..594 462 29.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 23:02:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24765-PA 571 GI24765-PA 5..571 27..594 2200 71.9 Plus
Dmoj\GI21379-PA 212 GI21379-PA 92..182 102..192 207 44 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 23:03:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12462-PA 572 GL12462-PA 1..572 24..594 2493 81.5 Plus
Dper\GL14083-PA 664 GL14083-PA 186..664 126..594 430 27.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 23:03:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10066-PA 572 GA10066-PA 1..572 24..594 2493 81.5 Plus
Dpse\GA24005-PA 282 GA24005-PA 186..252 126..192 197 52.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 23:03:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21064-PA 499 GM21064-PA 116..499 211..594 1915 95.6 Plus
Dsec\GM21064-PA 499 GM21064-PA 1..107 24..129 495 90.7 Plus
Dsec\GM22521-PA 665 GM22521-PA 187..665 126..594 462 29.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 23:03:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19955-PA 572 GD19955-PA 1..572 24..594 2889 94.4 Plus
Dsim\GD24677-PA 665 GD24677-PA 187..665 126..594 462 29.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 23:03:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22551-PA 571 GJ22551-PA 5..571 27..594 2228 72.6 Plus
Dvir\GJ14045-PA 594 GJ14045-PA 100..594 110..594 446 28.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 23:03:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12028-PA 575 GK12028-PA 1..575 24..594 2299 74.9 Plus
Dwil\GK15297-PA 649 GK15297-PA 194..560 126..487 421 31.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 23:03:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24948-PA 570 GE24948-PA 7..570 31..594 2660 89.7 Plus
Dyak\GE16015-PA 664 GE16015-PA 186..664 126..594 457 28.8 Plus