BDGP Sequence Production Resources |
Search the DGRC for RE18536
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 185 |
Well: | 36 |
Vector: | pFlc-1 |
Associated Gene/Transcript | zpg-RA |
Protein status: | RE18536.pep: gold |
Preliminary Size: | 1192 |
Sequenced Size: | 1468 |
Gene | Date | Evidence |
---|---|---|
CG10125 | 2002-01-01 | Sim4 clustering to Release 2 |
CG10125 | 2002-03-28 | Blastp of sequenced clone |
CG10125 | 2003-01-01 | Sim4 clustering to Release 3 |
zpg | 2008-04-29 | Release 5.5 accounting |
zpg | 2008-08-15 | Release 5.9 accounting |
zpg | 2008-12-18 | 5.12 accounting |
1468 bp (1468 high quality bases) assembled on 2002-03-28
GenBank Submission: AY094856
> RE18536.complete ATAGTATACATCAACCGTTATGATGCCGCGTGCTTTTGGTACAAGTTAAA TCGTCAAACTTTACAACCGCCCCAAAATTTTTGTTTTACGCCCGAAATTA AATAAAATAAATACGCCATCATGTACGCAGCTGTTAAACCGCTCTCCAAG TATCTGCAGTTCAAGTCGGTGCACATCTACGATGCTATTTTCACGCTGCA CTCCAAAGTCACAGTGGCCCTGCTTTTGGCCTGCACATTTTTGCTTTCCT CGAAACAATATTTCGGCGATCCCATCCAGTGTTTTGGGGACAAGGATATG GACTACGTGCACGCCTTTTGTTGGATCTACGGGGCCTATGTGAGCGACAA TGTGACTGTGACGCCCCTAAGGAATGGAGCTGCACAGTGCCGACCAGATG CGGTTAGTAAGGTAGTGCCCCCGGAAAATCGTAACTACATAACCTACTAT CAGTGGGTCGTGCTGGTATTGCTGCTCGAGTCGTTTGTGTTTTATATGCC AGCATTTCTCTGGAAGATTTGGGAGGGCGGTCGGCTGAAGCATTTGTGCG ATGATTTCCACAAGATGGCCGTTTGCAAGGACAAGAGCAGGACCCATTTG CGCGTACTAGTCAACTACTTCTCCAGCGATTACAAAGAGACCCACTTCCG CTACTTCGTTAGCTACGTCTTCTGCGAAATACTCAATTTGAGCATCAGTA TTCTAAACTTCCTTCTGTTGGACGTATTTTTCGGAGGTTTTTGGGGCCGC TACCGTAATGCCTTGCTGTCCCTTTACAATGGCGACTATAACCAGTGGAA CATTATAACCATGGCAGTCTTCCCCAAGTGTGCCAAGTGCGAGATGTACA AGGGCGGCCCCAGCGGTTCTTCCAACATATACGACTACCTTTGCCTGCTG CCCCTGAATATACTGAACGAGAAAATCTTCGCCTTCCTGTGGATATGGTT TATACTAGTGGCTATGCTCATTTCCCTCAAGTTTCTGTACCGCCTGGCCA CCGTTTTGTATCCCGGAATGCGTCTTCAGTTGCTTCGTGCCAGGGCACGT TTCATGCCCAAGAAGCACTTGCAGGTGGCATTGCGCAATTGCAGTTTTGG CGACTGGTTCGTGCTGATGCGCGTGGGCAACAACATCAGCCCCGAGCTAT TCCGTAAGTTGCTGGAGGAGCTGTACGAAGCTCAGTCCTTGATCAAAATA CCGCCAGGAGCGGACAAGATCTAAGATCTCAGCGATGACGCCAAGTTTAA TCTCAATATACTGAAATAGGTATTATCATTTGAATCATCTAGAGTAGAAG ACTAAGATGACACAAACAAGAATAACATACATTAATTTTTTCACATCGAT ATGTGCATATTATCGAAGATATAACGAACTATTATAATTTTTGTGCTAAG AATAATGTGCCATTTTCACTTGTTCAGTAAATTCTCATATTTCTTAATCA TCAAGAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 6596857..6597611 | 1453..700 | 3545 | 98.3 | Minus |
chr3L | 24539361 | chr3L | 6598042..6598438 | 397..1 | 1985 | 100 | Minus |
chr3L | 24539361 | chr3L | 6597684..6597988 | 699..395 | 1525 | 100 | Minus |
chrX | 22417052 | chrX | 20134855..20135015 | 281..121 | 190 | 74.5 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 6604449..6605202 | 1453..700 | 3770 | 100 | Minus |
3L | 28110227 | 3L | 6605633..6606029 | 397..1 | 1985 | 100 | Minus |
3L | 28110227 | 3L | 6605275..6605579 | 699..395 | 1525 | 100 | Minus |
X | 23542271 | X | 20269340..20269500 | 281..121 | 190 | 74.5 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 6597549..6598302 | 1453..700 | 3770 | 100 | Minus |
3L | 28103327 | 3L | 6598733..6599129 | 397..1 | 1985 | 100 | Minus |
3L | 28103327 | 3L | 6598375..6598679 | 699..395 | 1525 | 100 | Minus |
X | 23527363 | X | 19177372..19177431 | 942..883 | 165 | 85 | Minus |
X | 23527363 | X | 19178558..19178624 | 205..139 | 155 | 82 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 6596854..6597611 | 700..1455 | 98 | <- | Minus |
chr3L | 6597684..6597985 | 398..699 | 100 | <- | Minus |
chr3L | 6598042..6598438 | 1..397 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
zpg-RA | 1..1104 | 121..1224 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
zpg-RA | 1..1104 | 121..1224 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
zpg-RA | 1..1104 | 121..1224 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
zpg-RA | 1..1104 | 121..1224 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
zpg-RA | 1..1104 | 121..1224 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
zpg-RA | 1..1453 | 1..1455 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
zpg-RA | 1..1453 | 1..1455 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
zpg-RB | 4..1456 | 1..1455 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
zpg-RA | 1..1453 | 1..1455 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
zpg-RB | 4..1456 | 1..1455 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 6604446..6605202 | 700..1455 | 99 | <- | Minus |
3L | 6605275..6605576 | 398..699 | 100 | <- | Minus |
3L | 6605633..6606029 | 1..397 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 6604446..6605202 | 700..1455 | 99 | <- | Minus |
3L | 6605275..6605576 | 398..699 | 100 | <- | Minus |
3L | 6605633..6606029 | 1..397 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 6604446..6605202 | 700..1455 | 99 | <- | Minus |
3L | 6605275..6605576 | 398..699 | 100 | <- | Minus |
3L | 6605633..6606029 | 1..397 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 6597546..6598302 | 700..1455 | 99 | <- | Minus |
arm_3L | 6598375..6598676 | 398..699 | 100 | <- | Minus |
arm_3L | 6598733..6599129 | 1..397 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 6597546..6598302 | 700..1455 | 99 | <- | Minus |
3L | 6598375..6598676 | 398..699 | 100 | <- | Minus |
3L | 6598733..6599129 | 1..397 | 100 | Minus |
Translation from 120 to 1223
> RE18536.hyp MYAAVKPLSKYLQFKSVHIYDAIFTLHSKVTVALLLACTFLLSSKQYFGD PIQCFGDKDMDYVHAFCWIYGAYVSDNVTVTPLRNGAAQCRPDAVSKVVP PENRNYITYYQWVVLVLLLESFVFYMPAFLWKIWEGGRLKHLCDDFHKMA VCKDKSRTHLRVLVNYFSSDYKETHFRYFVSYVFCEILNLSISILNFLLL DVFFGGFWGRYRNALLSLYNGDYNQWNIITMAVFPKCAKCEMYKGGPSGS SNIYDYLCLLPLNILNEKIFAFLWIWFILVAMLISLKFLYRLATVLYPGM RLQLLRARARFMPKKHLQVALRNCSFGDWFVLMRVGNNISPELFRKLLEE LYEAQSLIKIPPGADKI*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
zpg-PB | 367 | CG10125-PB | 1..367 | 1..367 | 1969 | 100 | Plus |
zpg-PA | 367 | CG10125-PA | 1..367 | 1..367 | 1969 | 100 | Plus |
Inx5-PB | 419 | CG7537-PB | 1..408 | 1..356 | 951 | 43.4 | Plus |
Inx6-PA | 481 | CG17063-PA | 1..386 | 1..352 | 948 | 47.4 | Plus |
Inx2-PD | 367 | CG4590-PD | 4..354 | 1..356 | 606 | 35.8 | Plus |
Translation from 120 to 1223
> RE18536.pep MYAAVKPLSKYLQFKSVHIYDAIFTLHSKVTVALLLACTFLLSSKQYFGD PIQCFGDKDMDYVHAFCWIYGAYVSDNVTVTPLRNGAAQCRPDAVSKVVP PENRNYITYYQWVVLVLLLESFVFYMPAFLWKIWEGGRLKHLCDDFHKMA VCKDKSRTHLRVLVNYFSSDYKETHFRYFVSYVFCEILNLSISILNFLLL DVFFGGFWGRYRNALLSLYNGDYNQWNIITMAVFPKCAKCEMYKGGPSGS SNIYDYLCLLPLNILNEKIFAFLWIWFILVAMLISLKFLYRLATVLYPGM RLQLLRARARFMPKKHLQVALRNCSFGDWFVLMRVGNNISPELFRKLLEE LYEAQSLIKIPPGADKI*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF10895-PA | 367 | GF10895-PA | 1..358 | 1..359 | 1407 | 72.4 | Plus |
Dana\GF16006-PA | 435 | GF16006-PA | 37..424 | 1..356 | 977 | 46.1 | Plus |
Dana\GF20443-PA | 470 | GF20443-PA | 1..397 | 1..361 | 892 | 47.1 | Plus |
Dana\GF20357-PA | 367 | GF20357-PA | 4..349 | 1..351 | 601 | 36 | Plus |
Dana\GF20330-PA | 362 | GF20330-PA | 1..348 | 1..350 | 491 | 30.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG14053-PA | 367 | GG14053-PA | 1..367 | 1..367 | 1900 | 96.2 | Plus |
Dere\GG18075-PA | 426 | GG18075-PA | 1..415 | 1..356 | 942 | 42.7 | Plus |
Dere\GG18003-PA | 476 | GG18003-PA | 1..389 | 1..355 | 892 | 47.3 | Plus |
Dere\GG19626-PA | 367 | GG19626-PA | 4..349 | 1..351 | 601 | 36 | Plus |
Dere\GG17645-PA | 362 | GG17645-PA | 1..348 | 1..350 | 487 | 29.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH24223-PA | 397 | GH24223-PA | 1..382 | 1..356 | 932 | 46.3 | Plus |
Dgri\GH16270-PA | 391 | GH16270-PA | 1..387 | 1..365 | 900 | 52.2 | Plus |
Dgri\GH12627-PA | 451 | GH12627-PA | 1..399 | 1..356 | 870 | 45.4 | Plus |
Dgri\GH24686-PA | 367 | GH24686-PA | 4..349 | 1..351 | 579 | 35.1 | Plus |
Dgri\GH19243-PA | 394 | GH19243-PA | 3..355 | 1..351 | 485 | 29.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
zpg-PB | 367 | CG10125-PB | 1..367 | 1..367 | 1969 | 100 | Plus |
zpg-PA | 367 | CG10125-PA | 1..367 | 1..367 | 1969 | 100 | Plus |
Inx5-PB | 419 | CG7537-PB | 1..408 | 1..356 | 951 | 43.4 | Plus |
Inx6-PA | 481 | CG17063-PA | 1..386 | 1..352 | 948 | 47.4 | Plus |
Inx2-PD | 367 | CG4590-PD | 4..354 | 1..356 | 606 | 35.8 | Plus |
Inx2-PC | 367 | CG4590-PC | 4..354 | 1..356 | 606 | 35.8 | Plus |
Inx2-PB | 367 | CG4590-PB | 4..354 | 1..356 | 606 | 35.8 | Plus |
Inx2-PA | 367 | CG4590-PA | 4..354 | 1..356 | 606 | 35.8 | Plus |
shakB-PA | 372 | CG34358-PA | 4..350 | 1..351 | 522 | 30.3 | Plus |
shakB-PC | 361 | CG34358-PC | 5..339 | 17..351 | 502 | 31.4 | Plus |
shakB-PH | 377 | CG34358-PH | 21..355 | 17..351 | 502 | 31.4 | Plus |
shakB-PG | 377 | CG34358-PG | 21..355 | 17..351 | 502 | 31.4 | Plus |
shakB-PI | 377 | CG34358-PI | 21..355 | 17..351 | 502 | 31.4 | Plus |
shakB-PD | 532 | CG34358-PD | 176..510 | 17..351 | 502 | 31.4 | Plus |
ogre-PF | 362 | CG3039-PF | 1..348 | 1..350 | 498 | 30.7 | Plus |
ogre-PE | 362 | CG3039-PE | 1..348 | 1..350 | 498 | 30.7 | Plus |
ogre-PD | 362 | CG3039-PD | 1..348 | 1..350 | 498 | 30.7 | Plus |
ogre-PC | 362 | CG3039-PC | 1..348 | 1..350 | 498 | 30.7 | Plus |
ogre-PB | 362 | CG3039-PB | 1..348 | 1..350 | 498 | 30.7 | Plus |
ogre-PA | 362 | CG3039-PA | 1..348 | 1..350 | 498 | 30.7 | Plus |
Inx3-PC | 395 | CG1448-PC | 17..355 | 10..351 | 497 | 31.9 | Plus |
Inx3-PB | 395 | CG1448-PB | 17..355 | 10..351 | 497 | 31.9 | Plus |
Inx3-PA | 395 | CG1448-PA | 17..355 | 10..351 | 497 | 31.9 | Plus |
shakB-PF | 292 | CG34358-PF | 21..270 | 101..351 | 414 | 32.3 | Plus |
Inx7-PA | 438 | CG2977-PA | 10..370 | 10..351 | 391 | 29.6 | Plus |
shakB-PE | 316 | CG34358-PE | 64..294 | 120..351 | 375 | 31.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI15723-PA | 400 | GI15723-PA | 1..386 | 1..357 | 953 | 47.9 | Plus |
Dmoj\GI13206-PA | 395 | GI13206-PA | 1..391 | 1..365 | 930 | 50.1 | Plus |
Dmoj\GI11038-PA | 464 | GI11038-PA | 1..387 | 1..352 | 921 | 47.3 | Plus |
Dmoj\GI21669-PA | 367 | GI21669-PA | 4..364 | 1..361 | 598 | 35.4 | Plus |
Dmoj\GI21582-PA | 362 | GI21582-PA | 1..348 | 1..350 | 491 | 30.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL13242-PA | 368 | GL13242-PA | 1..368 | 1..367 | 1414 | 70.4 | Plus |
Dper\GL12912-PA | 460 | GL12912-PA | 1..379 | 1..352 | 920 | 47.8 | Plus |
Dper\GL14652-PA | 404 | GL14652-PA | 1..394 | 1..356 | 911 | 43.7 | Plus |
Dper\GL26811-PA | 362 | GL26811-PA | 1..348 | 1..350 | 483 | 29.3 | Plus |
Dper\GL23353-PA | 395 | GL23353-PA | 17..371 | 10..367 | 475 | 29.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA10092-PA | 368 | GA10092-PA | 1..368 | 1..367 | 1420 | 70.7 | Plus |
Dpse\GA20423-PA | 404 | GA20423-PA | 1..394 | 1..356 | 924 | 44.2 | Plus |
Dpse\GA14306-PA | 460 | GA14306-PA | 1..379 | 1..352 | 920 | 47.8 | Plus |
Dpse\GA18281-PA | 367 | GA18281-PA | 4..349 | 1..351 | 595 | 36 | Plus |
Dpse\GA26182-PA | 362 | GA26182-PA | 1..348 | 1..350 | 483 | 29.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM13833-PA | 350 | GM13833-PA | 1..350 | 1..367 | 1776 | 92.4 | Plus |
Dsec\GM22683-PA | 476 | GM22683-PA | 1..386 | 1..352 | 939 | 47.2 | Plus |
Dsec\GM22765-PA | 401 | GM22765-PA | 1..390 | 1..356 | 868 | 41.9 | Plus |
Dsec\GM17498-PA | 367 | GM17498-PA | 4..349 | 1..351 | 600 | 36 | Plus |
Dsec\GM12279-PA | 395 | GM12279-PA | 17..355 | 10..351 | 481 | 31.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD13120-PA | 367 | GD13120-PA | 1..367 | 1..367 | 1926 | 98.1 | Plus |
Dsim\GD15600-PA | 397 | GD15600-PA | 1..386 | 1..356 | 962 | 45.9 | Plus |
Dsim\GD16826-PA | 347 | GD16826-PA | 4..329 | 1..351 | 506 | 33.1 | Plus |
Dsim\GD18012-PA | 395 | GD18012-PA | 17..355 | 10..351 | 480 | 31.6 | Plus |
Dsim\GD16171-PA | 362 | GD16171-PA | 1..348 | 1..350 | 472 | 29.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ15253-PA | 399 | GJ15253-PA | 1..383 | 1..355 | 944 | 48.6 | Plus |
Dvir\GJ15819-PA | 449 | GJ15819-PA | 1..387 | 1..352 | 944 | 47.5 | Plus |
Dvir\GJ11982-PA | 393 | GJ11982-PA | 1..385 | 1..361 | 918 | 50.6 | Plus |
Dvir\GJ15793-PA | 367 | GJ15793-PA | 4..364 | 1..361 | 610 | 36.4 | Plus |
Dvir\GJ18913-PA | 372 | GJ18913-PA | 4..350 | 1..351 | 486 | 30.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK12587-PA | 357 | GK12587-PA | 1..350 | 1..355 | 1101 | 58.5 | Plus |
Dwil\GK25094-PA | 368 | GK25094-PA | 1..357 | 1..356 | 993 | 49.6 | Plus |
Dwil\GK25052-PA | 520 | GK25052-PA | 1..406 | 1..355 | 939 | 46.8 | Plus |
Dwil\GK25636-PA | 367 | GK25636-PA | 4..364 | 1..361 | 612 | 36.1 | Plus |
Dwil\GK13974-PA | 395 | GK13974-PA | 6..355 | 1..351 | 490 | 32 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE20477-PA | 367 | GE20477-PA | 1..367 | 1..367 | 1884 | 94.8 | Plus |
Dyak\GE15472-PA | 422 | GE15472-PA | 1..411 | 1..356 | 952 | 44.3 | Plus |
Dyak\GE15360-PA | 478 | GE15360-PA | 1..388 | 1..355 | 898 | 47.7 | Plus |
Dyak\GE15694-PA | 367 | GE15694-PA | 4..349 | 1..351 | 603 | 36 | Plus |
Dyak\GE17553-PA | 362 | GE17553-PA | 1..348 | 1..350 | 478 | 29.9 | Plus |