Clone RE18536 Report

Search the DGRC for RE18536

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:185
Well:36
Vector:pFlc-1
Associated Gene/Transcriptzpg-RA
Protein status:RE18536.pep: gold
Preliminary Size:1192
Sequenced Size:1468

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10125 2002-01-01 Sim4 clustering to Release 2
CG10125 2002-03-28 Blastp of sequenced clone
CG10125 2003-01-01 Sim4 clustering to Release 3
zpg 2008-04-29 Release 5.5 accounting
zpg 2008-08-15 Release 5.9 accounting
zpg 2008-12-18 5.12 accounting

Clone Sequence Records

RE18536.complete Sequence

1468 bp (1468 high quality bases) assembled on 2002-03-28

GenBank Submission: AY094856

> RE18536.complete
ATAGTATACATCAACCGTTATGATGCCGCGTGCTTTTGGTACAAGTTAAA
TCGTCAAACTTTACAACCGCCCCAAAATTTTTGTTTTACGCCCGAAATTA
AATAAAATAAATACGCCATCATGTACGCAGCTGTTAAACCGCTCTCCAAG
TATCTGCAGTTCAAGTCGGTGCACATCTACGATGCTATTTTCACGCTGCA
CTCCAAAGTCACAGTGGCCCTGCTTTTGGCCTGCACATTTTTGCTTTCCT
CGAAACAATATTTCGGCGATCCCATCCAGTGTTTTGGGGACAAGGATATG
GACTACGTGCACGCCTTTTGTTGGATCTACGGGGCCTATGTGAGCGACAA
TGTGACTGTGACGCCCCTAAGGAATGGAGCTGCACAGTGCCGACCAGATG
CGGTTAGTAAGGTAGTGCCCCCGGAAAATCGTAACTACATAACCTACTAT
CAGTGGGTCGTGCTGGTATTGCTGCTCGAGTCGTTTGTGTTTTATATGCC
AGCATTTCTCTGGAAGATTTGGGAGGGCGGTCGGCTGAAGCATTTGTGCG
ATGATTTCCACAAGATGGCCGTTTGCAAGGACAAGAGCAGGACCCATTTG
CGCGTACTAGTCAACTACTTCTCCAGCGATTACAAAGAGACCCACTTCCG
CTACTTCGTTAGCTACGTCTTCTGCGAAATACTCAATTTGAGCATCAGTA
TTCTAAACTTCCTTCTGTTGGACGTATTTTTCGGAGGTTTTTGGGGCCGC
TACCGTAATGCCTTGCTGTCCCTTTACAATGGCGACTATAACCAGTGGAA
CATTATAACCATGGCAGTCTTCCCCAAGTGTGCCAAGTGCGAGATGTACA
AGGGCGGCCCCAGCGGTTCTTCCAACATATACGACTACCTTTGCCTGCTG
CCCCTGAATATACTGAACGAGAAAATCTTCGCCTTCCTGTGGATATGGTT
TATACTAGTGGCTATGCTCATTTCCCTCAAGTTTCTGTACCGCCTGGCCA
CCGTTTTGTATCCCGGAATGCGTCTTCAGTTGCTTCGTGCCAGGGCACGT
TTCATGCCCAAGAAGCACTTGCAGGTGGCATTGCGCAATTGCAGTTTTGG
CGACTGGTTCGTGCTGATGCGCGTGGGCAACAACATCAGCCCCGAGCTAT
TCCGTAAGTTGCTGGAGGAGCTGTACGAAGCTCAGTCCTTGATCAAAATA
CCGCCAGGAGCGGACAAGATCTAAGATCTCAGCGATGACGCCAAGTTTAA
TCTCAATATACTGAAATAGGTATTATCATTTGAATCATCTAGAGTAGAAG
ACTAAGATGACACAAACAAGAATAACATACATTAATTTTTTCACATCGAT
ATGTGCATATTATCGAAGATATAACGAACTATTATAATTTTTGTGCTAAG
AATAATGTGCCATTTTCACTTGTTCAGTAAATTCTCATATTTCTTAATCA
TCAAGAAAAAAAAAAAAA

RE18536.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:18:56
Subject Length Description Subject Range Query Range Score Percent Strand
zpg-RA 1560 zpg-RA 14..1466 1..1453 7265 100 Plus
inx5-RB 1956 inx5-RB 1337..1396 883..942 165 85 Plus
inx5-RB 1956 inx5-RB 437..503 139..205 155 82 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 01:21:32
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 6596857..6597611 1453..700 3545 98.3 Minus
chr3L 24539361 chr3L 6598042..6598438 397..1 1985 100 Minus
chr3L 24539361 chr3L 6597684..6597988 699..395 1525 100 Minus
chrX 22417052 chrX 20134855..20135015 281..121 190 74.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:39:34 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 01:21:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6604449..6605202 1453..700 3770 100 Minus
3L 28110227 3L 6605633..6606029 397..1 1985 100 Minus
3L 28110227 3L 6605275..6605579 699..395 1525 100 Minus
X 23542271 X 20269340..20269500 281..121 190 74.5 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:48:35
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 6597549..6598302 1453..700 3770 100 Minus
3L 28103327 3L 6598733..6599129 397..1 1985 100 Minus
3L 28103327 3L 6598375..6598679 699..395 1525 100 Minus
X 23527363 X 19177372..19177431 942..883 165 85 Minus
X 23527363 X 19178558..19178624 205..139 155 82 Minus
Blast to na_te.dros performed on 2019-03-16 01:21:30 has no hits.

RE18536.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 01:22:17 Download gff for RE18536.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 6596854..6597611 700..1455 98 <- Minus
chr3L 6597684..6597985 398..699 100 <- Minus
chr3L 6598042..6598438 1..397 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:59:42 Download gff for RE18536.complete
Subject Subject Range Query Range Percent Splice Strand
zpg-RA 1..1104 121..1224 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:23:38 Download gff for RE18536.complete
Subject Subject Range Query Range Percent Splice Strand
zpg-RA 1..1104 121..1224 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:05:37 Download gff for RE18536.complete
Subject Subject Range Query Range Percent Splice Strand
zpg-RA 1..1104 121..1224 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:59:53 Download gff for RE18536.complete
Subject Subject Range Query Range Percent Splice Strand
zpg-RA 1..1104 121..1224 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:32:10 Download gff for RE18536.complete
Subject Subject Range Query Range Percent Splice Strand
zpg-RA 1..1104 121..1224 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:50:31 Download gff for RE18536.complete
Subject Subject Range Query Range Percent Splice Strand
zpg-RA 1..1453 1..1455 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:23:38 Download gff for RE18536.complete
Subject Subject Range Query Range Percent Splice Strand
zpg-RA 1..1453 1..1455 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:05:37 Download gff for RE18536.complete
Subject Subject Range Query Range Percent Splice Strand
zpg-RB 4..1456 1..1455 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:59:53 Download gff for RE18536.complete
Subject Subject Range Query Range Percent Splice Strand
zpg-RA 1..1453 1..1455 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:32:10 Download gff for RE18536.complete
Subject Subject Range Query Range Percent Splice Strand
zpg-RB 4..1456 1..1455 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:22:17 Download gff for RE18536.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6604446..6605202 700..1455 99 <- Minus
3L 6605275..6605576 398..699 100 <- Minus
3L 6605633..6606029 1..397 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:22:17 Download gff for RE18536.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6604446..6605202 700..1455 99 <- Minus
3L 6605275..6605576 398..699 100 <- Minus
3L 6605633..6606029 1..397 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:22:17 Download gff for RE18536.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6604446..6605202 700..1455 99 <- Minus
3L 6605275..6605576 398..699 100 <- Minus
3L 6605633..6606029 1..397 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:05:37 Download gff for RE18536.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6597546..6598302 700..1455 99 <- Minus
arm_3L 6598375..6598676 398..699 100 <- Minus
arm_3L 6598733..6599129 1..397 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:32:49 Download gff for RE18536.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6597546..6598302 700..1455 99 <- Minus
3L 6598375..6598676 398..699 100 <- Minus
3L 6598733..6599129 1..397 100   Minus

RE18536.hyp Sequence

Translation from 120 to 1223

> RE18536.hyp
MYAAVKPLSKYLQFKSVHIYDAIFTLHSKVTVALLLACTFLLSSKQYFGD
PIQCFGDKDMDYVHAFCWIYGAYVSDNVTVTPLRNGAAQCRPDAVSKVVP
PENRNYITYYQWVVLVLLLESFVFYMPAFLWKIWEGGRLKHLCDDFHKMA
VCKDKSRTHLRVLVNYFSSDYKETHFRYFVSYVFCEILNLSISILNFLLL
DVFFGGFWGRYRNALLSLYNGDYNQWNIITMAVFPKCAKCEMYKGGPSGS
SNIYDYLCLLPLNILNEKIFAFLWIWFILVAMLISLKFLYRLATVLYPGM
RLQLLRARARFMPKKHLQVALRNCSFGDWFVLMRVGNNISPELFRKLLEE
LYEAQSLIKIPPGADKI*

RE18536.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:31:00
Subject Length Description Subject Range Query Range Score Percent Strand
zpg-PB 367 CG10125-PB 1..367 1..367 1969 100 Plus
zpg-PA 367 CG10125-PA 1..367 1..367 1969 100 Plus
Inx5-PB 419 CG7537-PB 1..408 1..356 951 43.4 Plus
Inx6-PA 481 CG17063-PA 1..386 1..352 948 47.4 Plus
Inx2-PD 367 CG4590-PD 4..354 1..356 606 35.8 Plus

RE18536.pep Sequence

Translation from 120 to 1223

> RE18536.pep
MYAAVKPLSKYLQFKSVHIYDAIFTLHSKVTVALLLACTFLLSSKQYFGD
PIQCFGDKDMDYVHAFCWIYGAYVSDNVTVTPLRNGAAQCRPDAVSKVVP
PENRNYITYYQWVVLVLLLESFVFYMPAFLWKIWEGGRLKHLCDDFHKMA
VCKDKSRTHLRVLVNYFSSDYKETHFRYFVSYVFCEILNLSISILNFLLL
DVFFGGFWGRYRNALLSLYNGDYNQWNIITMAVFPKCAKCEMYKGGPSGS
SNIYDYLCLLPLNILNEKIFAFLWIWFILVAMLISLKFLYRLATVLYPGM
RLQLLRARARFMPKKHLQVALRNCSFGDWFVLMRVGNNISPELFRKLLEE
LYEAQSLIKIPPGADKI*

RE18536.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:08:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10895-PA 367 GF10895-PA 1..358 1..359 1407 72.4 Plus
Dana\GF16006-PA 435 GF16006-PA 37..424 1..356 977 46.1 Plus
Dana\GF20443-PA 470 GF20443-PA 1..397 1..361 892 47.1 Plus
Dana\GF20357-PA 367 GF20357-PA 4..349 1..351 601 36 Plus
Dana\GF20330-PA 362 GF20330-PA 1..348 1..350 491 30.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:08:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14053-PA 367 GG14053-PA 1..367 1..367 1900 96.2 Plus
Dere\GG18075-PA 426 GG18075-PA 1..415 1..356 942 42.7 Plus
Dere\GG18003-PA 476 GG18003-PA 1..389 1..355 892 47.3 Plus
Dere\GG19626-PA 367 GG19626-PA 4..349 1..351 601 36 Plus
Dere\GG17645-PA 362 GG17645-PA 1..348 1..350 487 29.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:08:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24223-PA 397 GH24223-PA 1..382 1..356 932 46.3 Plus
Dgri\GH16270-PA 391 GH16270-PA 1..387 1..365 900 52.2 Plus
Dgri\GH12627-PA 451 GH12627-PA 1..399 1..356 870 45.4 Plus
Dgri\GH24686-PA 367 GH24686-PA 4..349 1..351 579 35.1 Plus
Dgri\GH19243-PA 394 GH19243-PA 3..355 1..351 485 29.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:19:00
Subject Length Description Subject Range Query Range Score Percent Strand
zpg-PB 367 CG10125-PB 1..367 1..367 1969 100 Plus
zpg-PA 367 CG10125-PA 1..367 1..367 1969 100 Plus
Inx5-PB 419 CG7537-PB 1..408 1..356 951 43.4 Plus
Inx6-PA 481 CG17063-PA 1..386 1..352 948 47.4 Plus
Inx2-PD 367 CG4590-PD 4..354 1..356 606 35.8 Plus
Inx2-PC 367 CG4590-PC 4..354 1..356 606 35.8 Plus
Inx2-PB 367 CG4590-PB 4..354 1..356 606 35.8 Plus
Inx2-PA 367 CG4590-PA 4..354 1..356 606 35.8 Plus
shakB-PA 372 CG34358-PA 4..350 1..351 522 30.3 Plus
shakB-PC 361 CG34358-PC 5..339 17..351 502 31.4 Plus
shakB-PH 377 CG34358-PH 21..355 17..351 502 31.4 Plus
shakB-PG 377 CG34358-PG 21..355 17..351 502 31.4 Plus
shakB-PI 377 CG34358-PI 21..355 17..351 502 31.4 Plus
shakB-PD 532 CG34358-PD 176..510 17..351 502 31.4 Plus
ogre-PF 362 CG3039-PF 1..348 1..350 498 30.7 Plus
ogre-PE 362 CG3039-PE 1..348 1..350 498 30.7 Plus
ogre-PD 362 CG3039-PD 1..348 1..350 498 30.7 Plus
ogre-PC 362 CG3039-PC 1..348 1..350 498 30.7 Plus
ogre-PB 362 CG3039-PB 1..348 1..350 498 30.7 Plus
ogre-PA 362 CG3039-PA 1..348 1..350 498 30.7 Plus
Inx3-PC 395 CG1448-PC 17..355 10..351 497 31.9 Plus
Inx3-PB 395 CG1448-PB 17..355 10..351 497 31.9 Plus
Inx3-PA 395 CG1448-PA 17..355 10..351 497 31.9 Plus
shakB-PF 292 CG34358-PF 21..270 101..351 414 32.3 Plus
Inx7-PA 438 CG2977-PA 10..370 10..351 391 29.6 Plus
shakB-PE 316 CG34358-PE 64..294 120..351 375 31.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:08:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15723-PA 400 GI15723-PA 1..386 1..357 953 47.9 Plus
Dmoj\GI13206-PA 395 GI13206-PA 1..391 1..365 930 50.1 Plus
Dmoj\GI11038-PA 464 GI11038-PA 1..387 1..352 921 47.3 Plus
Dmoj\GI21669-PA 367 GI21669-PA 4..364 1..361 598 35.4 Plus
Dmoj\GI21582-PA 362 GI21582-PA 1..348 1..350 491 30.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:08:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13242-PA 368 GL13242-PA 1..368 1..367 1414 70.4 Plus
Dper\GL12912-PA 460 GL12912-PA 1..379 1..352 920 47.8 Plus
Dper\GL14652-PA 404 GL14652-PA 1..394 1..356 911 43.7 Plus
Dper\GL26811-PA 362 GL26811-PA 1..348 1..350 483 29.3 Plus
Dper\GL23353-PA 395 GL23353-PA 17..371 10..367 475 29.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:08:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10092-PA 368 GA10092-PA 1..368 1..367 1420 70.7 Plus
Dpse\GA20423-PA 404 GA20423-PA 1..394 1..356 924 44.2 Plus
Dpse\GA14306-PA 460 GA14306-PA 1..379 1..352 920 47.8 Plus
Dpse\GA18281-PA 367 GA18281-PA 4..349 1..351 595 36 Plus
Dpse\GA26182-PA 362 GA26182-PA 1..348 1..350 483 29.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:08:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13833-PA 350 GM13833-PA 1..350 1..367 1776 92.4 Plus
Dsec\GM22683-PA 476 GM22683-PA 1..386 1..352 939 47.2 Plus
Dsec\GM22765-PA 401 GM22765-PA 1..390 1..356 868 41.9 Plus
Dsec\GM17498-PA 367 GM17498-PA 4..349 1..351 600 36 Plus
Dsec\GM12279-PA 395 GM12279-PA 17..355 10..351 481 31.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:08:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13120-PA 367 GD13120-PA 1..367 1..367 1926 98.1 Plus
Dsim\GD15600-PA 397 GD15600-PA 1..386 1..356 962 45.9 Plus
Dsim\GD16826-PA 347 GD16826-PA 4..329 1..351 506 33.1 Plus
Dsim\GD18012-PA 395 GD18012-PA 17..355 10..351 480 31.6 Plus
Dsim\GD16171-PA 362 GD16171-PA 1..348 1..350 472 29.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:08:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15253-PA 399 GJ15253-PA 1..383 1..355 944 48.6 Plus
Dvir\GJ15819-PA 449 GJ15819-PA 1..387 1..352 944 47.5 Plus
Dvir\GJ11982-PA 393 GJ11982-PA 1..385 1..361 918 50.6 Plus
Dvir\GJ15793-PA 367 GJ15793-PA 4..364 1..361 610 36.4 Plus
Dvir\GJ18913-PA 372 GJ18913-PA 4..350 1..351 486 30.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:08:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12587-PA 357 GK12587-PA 1..350 1..355 1101 58.5 Plus
Dwil\GK25094-PA 368 GK25094-PA 1..357 1..356 993 49.6 Plus
Dwil\GK25052-PA 520 GK25052-PA 1..406 1..355 939 46.8 Plus
Dwil\GK25636-PA 367 GK25636-PA 4..364 1..361 612 36.1 Plus
Dwil\GK13974-PA 395 GK13974-PA 6..355 1..351 490 32 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:08:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20477-PA 367 GE20477-PA 1..367 1..367 1884 94.8 Plus
Dyak\GE15472-PA 422 GE15472-PA 1..411 1..356 952 44.3 Plus
Dyak\GE15360-PA 478 GE15360-PA 1..388 1..355 898 47.7 Plus
Dyak\GE15694-PA 367 GE15694-PA 4..349 1..351 603 36 Plus
Dyak\GE17553-PA 362 GE17553-PA 1..348 1..350 478 29.9 Plus