BDGP Sequence Production Resources |
Search the DGRC for RE18604
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 186 |
Well: | 4 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG5174-RH |
Protein status: | RE18604.pep: gold |
Preliminary Size: | 5146 |
Sequenced Size: | 1484 |
Gene | Date | Evidence |
---|---|---|
CG5174 | 2002-10-09 | Blastp of sequenced clone |
CG5174 | 2003-01-01 | Sim4 clustering to Release 3 |
CG5174 | 2008-04-29 | Release 5.5 accounting |
CG5174 | 2008-08-15 | Release 5.9 accounting |
CG5174 | 2008-12-18 | 5.12 accounting |
1484 bp (1484 high quality bases) assembled on 2002-10-09
GenBank Submission: BT001567
> RE18604.complete AGCAACCATCGATAGCTAAGCAAGCGAAACAAAAAATTATTTTCAACTTG AAAGTTTTGCGACAAGTGCGTGCAGTTGGCATCGAAATAGTTAACAAAAT TGCCGCAGACTTCCGGAGACAACGCCGTAATGGAGGACCATAATACAGCC AACCTGTCGGAGCCAGCATCTCCAGCTAATTCTGTGGCATCCGCAGAAAT TGCCGCCGAGTTCGCTGCGCTTTCCGTCGAGGAGAAGGAGCAGCGTCGGG CTGAGTGGAGTCAGGAGCTCGCCCGCGTTGAGGAAGAGATCAATACGCTG CGAACTGTCCTAGCCTCCAAGACGCGCCATGCCTCCGATCTCAAGCGCAA GCTGGGCATCACCGTCTGGAAGGAGGTGACGGACGACGTGAACCAGGGCC TTAAGAACCTCAAGGAGAGCACTGTATACCAACGCACTGAGTCGGTGCTA AAGTCCACGGGCGAGAAGACCGCCTCGGTGTTTGGCAGCATCACCAGTGG CATTTCGTCGAAACTGTCGCAAATGAAAAACTCCGAATCGATGCGTTCTA TCGAGGCTTCGGTGGGCTCTGCCTACGAGAACGTTAAAACCAAGGTGACA TCCCGCTCGGGTTCGGTGTCCAGTTTCCCAGATGCCCTGGACGAGAATAA CACATCCTCGGGTCTGAATTCACCCACAGACTCACTCCCGAAATAGATTT CGGGGCAACTGCAAGGCCAAGCGCGTCGATAATGTGGAGCAACCTATACT ACATACAAACAGACCCACGCACCCACTCTATTAACTTATTTAACTAAAGC GAATTGTCGTGTCTGCGCACTAACAACAGGATCAGAATTAATTTAACCAG AAATCATATGTACACCTGTGTCGATACGGTTTATATAATACTTAATATAA CTAAAATCTGCGCGTCAAAAATTTGCCAATGGGAGCACATATTATATGCA TCTATTTGTATTTGCCTTGGAGACACCATCAAATTGCATGACTTGTTTAA ATTTAAAGCCACGGAGGATCGAAGATCCAAGGGCTTGCTGCATTCGTTTA TATAACTATCAATCTAAGTGTACGTTTAAAGACTAAACCACATTGGATGG TCCACCCGATGTCATTCCCAAATGTTTCTAATACTTAGTAAAAACATTAG AAAATCATGCATTGCGGTTAAAGTGAATATACATTTGTTTTACGCTTTTA TTTCTTCTCTAGGCGTTGAGTTCCGTGGTTAGATGGCGTTCCCTAATCCG TTGAAAAGCCAATTCCAAATTTATTTAGTACTAAATATTTGTGTTACGAT CAGAGCTTGCGTGCAAATAACGAAAATCCATTGGTAAACTTAAGTGGATG TAGTCCGTACTGCTGAAGATTGAGAAAGAGACGAAATCGCACCCAATTTG TTGCTAATGCTGATCAAATTTGCTATATGTGTATGAAATCTTTGAATAAA TGCAAAAATTTTTGCCCCAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG5174-RH | 1611 | CG5174-RH | 134..1608 | 1..1475 | 7360 | 99.9 | Plus |
CG5174-RA | 1654 | CG5174-RA | 601..1651 | 425..1475 | 5240 | 99.9 | Plus |
CG5174.b | 1696 | CG5174.b | 807..1693 | 589..1475 | 4420 | 99.8 | Plus |
CG5174-RA | 1654 | CG5174-RA | 117..548 | 1..432 | 2145 | 99.7 | Plus |
CG5174.b | 1696 | CG5174.b | 117..548 | 1..432 | 2145 | 99.7 | Plus |
CG5174.b | 1696 | CG5174.b | 601..764 | 425..588 | 820 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 14312391..14313271 | 589..1468 | 4355 | 99.9 | Plus |
chr2R | 21145070 | chr2R | 14311374..14311537 | 262..425 | 820 | 100 | Plus |
chr2R | 21145070 | chr2R | 14311923..14312085 | 426..588 | 815 | 100 | Plus |
chr2R | 21145070 | chr2R | 14308466..14308608 | 1..143 | 670 | 97.9 | Plus |
chr2R | 21145070 | chr2R | 14311178..14311303 | 140..265 | 630 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 18425340..18426226 | 589..1475 | 4420 | 99.9 | Plus |
2R | 25286936 | 2R | 18424323..18424486 | 262..425 | 820 | 100 | Plus |
2R | 25286936 | 2R | 18424872..18425034 | 426..588 | 815 | 100 | Plus |
2R | 25286936 | 2R | 18421415..18421557 | 1..143 | 700 | 99.3 | Plus |
2R | 25286936 | 2R | 18424127..18424252 | 140..265 | 630 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 18426539..18427425 | 589..1475 | 4420 | 99.8 | Plus |
2R | 25260384 | 2R | 18425522..18425685 | 262..425 | 820 | 100 | Plus |
2R | 25260384 | 2R | 18426071..18426233 | 426..588 | 815 | 100 | Plus |
2R | 25260384 | 2R | 18422614..18422756 | 1..143 | 700 | 99.3 | Plus |
2R | 25260384 | 2R | 18425326..18425451 | 140..265 | 630 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 14311377..14311537 | 265..425 | 100 | -> | Plus |
chr2R | 14311923..14312085 | 426..588 | 100 | -> | Plus |
chr2R | 14308466..14308604 | 1..139 | 98 | -> | Plus |
chr2R | 14311178..14311302 | 140..264 | 100 | -> | Plus |
chr2R | 14312391..14313271 | 589..1468 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5174-RH | 1..567 | 130..696 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5174-RH | 1..567 | 130..696 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5174-RH | 1..567 | 130..696 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5174-RH | 1..567 | 130..696 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5174-RH | 1..567 | 130..696 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5174-RH | 6..1473 | 1..1468 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5174-RH | 6..1473 | 1..1468 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5174-RH | 3..1470 | 1..1468 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5174-RH | 6..1473 | 1..1468 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5174-RH | 3..1470 | 1..1468 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 18421415..18421553 | 1..139 | 100 | -> | Plus |
2R | 18424127..18424251 | 140..264 | 100 | -> | Plus |
2R | 18424326..18424486 | 265..425 | 100 | -> | Plus |
2R | 18424872..18425034 | 426..588 | 100 | -> | Plus |
2R | 18425340..18426219 | 589..1468 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 18421415..18421553 | 1..139 | 100 | -> | Plus |
2R | 18424127..18424251 | 140..264 | 100 | -> | Plus |
2R | 18424326..18424486 | 265..425 | 100 | -> | Plus |
2R | 18424872..18425034 | 426..588 | 100 | -> | Plus |
2R | 18425340..18426219 | 589..1468 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 18421415..18421553 | 1..139 | 100 | -> | Plus |
2R | 18424127..18424251 | 140..264 | 100 | -> | Plus |
2R | 18424326..18424486 | 265..425 | 100 | -> | Plus |
2R | 18424872..18425034 | 426..588 | 100 | -> | Plus |
2R | 18425340..18426219 | 589..1468 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 14311632..14311756 | 140..264 | 100 | -> | Plus |
arm_2R | 14311831..14311991 | 265..425 | 100 | -> | Plus |
arm_2R | 14312377..14312539 | 426..588 | 100 | -> | Plus |
arm_2R | 14308920..14309058 | 1..139 | 100 | -> | Plus |
arm_2R | 14312845..14313724 | 589..1468 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 18426539..18427418 | 589..1468 | 100 | Plus | |
2R | 18422614..18422752 | 1..139 | 100 | -> | Plus |
2R | 18425326..18425450 | 140..264 | 100 | -> | Plus |
2R | 18425525..18425685 | 265..425 | 100 | -> | Plus |
2R | 18426071..18426233 | 426..588 | 100 | -> | Plus |
Translation from 129 to 695
> RE18604.pep MEDHNTANLSEPASPANSVASAEIAAEFAALSVEEKEQRRAEWSQELARV EEEINTLRTVLASKTRHASDLKRKLGITVWKEVTDDVNQGLKNLKESTVY QRTESVLKSTGEKTASVFGSITSGISSKLSQMKNSESMRSIEASVGSAYE NVKTKVTSRSGSVSSFPDALDENNTSSGLNSPTDSLPK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF12177-PA | 351 | GF12177-PA | 148..351 | 5..188 | 819 | 87.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG21893-PA | 364 | GG21893-PA | 161..364 | 5..188 | 892 | 89.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH21673-PA | 351 | GH21673-PA | 148..351 | 5..188 | 842 | 83.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG5174-PH | 188 | CG5174-PH | 1..188 | 1..188 | 919 | 100 | Plus |
CG5174-PM | 202 | CG5174-PM | 19..202 | 5..188 | 895 | 100 | Plus |
CG5174-PA | 208 | CG5174-PA | 1..208 | 1..188 | 888 | 90.4 | Plus |
CG5174-PL | 209 | CG5174-PL | 1..209 | 1..188 | 870 | 89.5 | Plus |
CG5174-PB | 355 | CG5174-PB | 152..355 | 5..188 | 864 | 90.2 | Plus |
CG5174-PN | 222 | CG5174-PN | 1..222 | 1..188 | 863 | 84.7 | Plus |
CG5174-PP | 365 | CG5174-PP | 148..365 | 5..188 | 839 | 84.4 | Plus |
CG5174-PO | 369 | CG5174-PO | 152..369 | 5..188 | 839 | 84.4 | Plus |
CG5174-PG | 166 | CG5174-PG | 1..153 | 1..153 | 744 | 100 | Plus |
CG5174-PJ | 186 | CG5174-PJ | 1..173 | 1..153 | 713 | 88.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI20126-PA | 350 | GI20126-PA | 147..350 | 5..188 | 847 | 83.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL17776-PA | 372 | GL17776-PA | 165..372 | 1..188 | 802 | 83.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18710-PC | 208 | GA18710-PC | 1..208 | 1..188 | 834 | 85.1 | Plus |
Dpse\GA18710-PA | 374 | GA18710-PA | 167..374 | 1..188 | 801 | 83.2 | Plus |
Dpse\GA18710-PB | 361 | GA18710-PB | 158..361 | 5..188 | 800 | 84.8 | Plus |
Dpse\GA18710-PD | 184 | GA18710-PD | 1..173 | 1..153 | 661 | 83.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM21885-PA | 364 | GM21885-PA | 161..364 | 5..188 | 902 | 89.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD11382-PA | 221 | GD11382-PA | 18..221 | 5..188 | 902 | 89.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ19896-PA | 350 | GJ19896-PA | 147..350 | 5..188 | 785 | 83.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK22994-PA | 352 | GK22994-PA | 149..352 | 5..188 | 805 | 84.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE11969-PA | 371 | GE11969-PA | 168..371 | 5..188 | 890 | 88.7 | Plus |
Translation from 129 to 695
> RE18604.hyp MEDHNTANLSEPASPANSVASAEIAAEFAALSVEEKEQRRAEWSQELARV EEEINTLRTVLASKTRHASDLKRKLGITVWKEVTDDVNQGLKNLKESTVY QRTESVLKSTGEKTASVFGSITSGISSKLSQMKNSESMRSIEASVGSAYE NVKTKVTSRSGSVSSFPDALDENNTSSGLNSPTDSLPK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG5174-PH | 188 | CG5174-PH | 1..188 | 1..188 | 919 | 100 | Plus |
CG5174-PM | 202 | CG5174-PM | 19..202 | 5..188 | 895 | 100 | Plus |
CG5174-PA | 208 | CG5174-PA | 1..208 | 1..188 | 888 | 90.4 | Plus |
CG5174-PL | 209 | CG5174-PL | 1..209 | 1..188 | 870 | 89.5 | Plus |
CG5174-PN | 222 | CG5174-PN | 1..222 | 1..188 | 863 | 84.7 | Plus |