BDGP Sequence Production Resources |
Search the DGRC for RE18811
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 188 |
Well: | 11 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG12177-RA |
Protein status: | RE18811.pep: gold |
Preliminary Size: | 1100 |
Sequenced Size: | 1817 |
Gene | Date | Evidence |
---|---|---|
CG12177 | 2002-01-01 | Sim4 clustering to Release 2 |
CG12177 | 2003-01-01 | Sim4 clustering to Release 3 |
CG12177 | 2004-08-12 | Blastp of sequenced clone |
CG12177 | 2008-04-29 | Release 5.5 accounting |
CG12177 | 2008-08-15 | Release 5.9 accounting |
CG12177 | 2008-12-18 | 5.12 accounting |
1817 bp (1817 high quality bases) assembled on 2004-08-12
GenBank Submission: BT021941
> RE18811.complete AGTGGAGTTTAGTTGAGTTGAGTCGGAGAACGAGCGTTATGAAATTCCGT GATATGGTGCTCTGGTAATACCCATGCCCATACCCATGCCCCAGAACCAT AACCAGAGCCAGAGGCACACTCATAACCGAGGCGAGCCGATAGACGAAGT CCGGCGGCGGAGGCGACCAGATGATTGCCGTATGTGCATACTATATGGGT AGTCCGTAGTCCGCTGTTCGGGCACATTCAACAATTGCCGGCGATGGCGG ACGGACGCATAGTGGAAAACGGCAGAGGAGGAGGCGGTGAAGGAGTAGCA GCAGCACCATCGCCCAGATACGCGATCCTCGACTGTGATGGGGGTAGCGA CGATGCCTGGGCACTGCTCCTGCTTCTGCATGCGGCTAAGAGCCATGGGA TTCATCTGCTGGCCATCACCACAATGGGATGCGGCAATACCAGCAGGGAG AATGCGGCACGCAATATGCGACGGATTCTGGATGCCTGCAAGCGCACAGA TATTCCCATATACCTGGGCGCCGTAGATGCCCTCATTCCCTCTCTGGAGG ATGAAAAAAAGTATTTCCATGGCCGCGACGGATTCGGTGACTGTCTCACC GACGACTGCGCTCTTCAGTTGGAGGACATCGTGCAGGCGGAGCACGCAGT GACAGCCATCCATGATCTCTGCCGTTCCAGGCCCAAACAGATCACCATAT TTGCCGTGGGCCCGCTGACGAATCTTGCCCTGGGCTATACGATGTACGGT CCGGAGTTTGGGAATAACTTTCGTGATCTGTTCATTATGGGCGGCAACTA TCAGGGCGTGGGCAACTCCTCGCGTTCGGCGGAGTTCAACTTTCACTCGG ATCCGGAGGCGGCGCACACGGTGCTGCTGAGGACACGCTGTCCCATCACC ATACTGCCGTGGGAGGCCTGCCTCCCGGAGAGATTCAATATACACATTAA CTGGCGCCTGAAGGATTTCGCCGCAAGGGCCAAGGAAGCCGGACATCCAG CAATTACCATGCTCAACCAGGTGGAAGCCGCCCAGTGGCTGCCAATGATC GAGCAGTACGGGATCGATACGTGGAATCCATGCGATGCCATTGCCGTGGC CGTTTGGCTATTCGAGGATCACTTGATCCGGAGGCACAACACCTGGCACG CCACCGTGGATCTGCGGGGCACCCACACTCGCGGCCAGATGGTTCTCGAT CATTTGCGGGAGCGCGAAAAGTATCCGGAGAACGTGCGCATTATCGAGCT GGTGGATGTCGAGTTCTTTAAACGGATCTGCGAATGGATCGCCGGCTTGG ATGACGGCGCCCTACTCCGCGACACTCAATAAATCCATATCTCTAGTAAT TCCCGCCTTTTTCTTCGGCGCTATCATTTGATTCCCCCATTTATCAACGG TTCACAATGGTTATGGGGGGGGGGGGGGTCTTGGCGATAAGAGTGCTTTT GGAACAGGTGCACAACACGATCCATAGAGCAGTTCCGAGATGGCACCAAC CTAATCGGAATTTAAGCTTTAAACACTTAATCGGTGATTAAGCGTAAGGT TGCAAAATTGGCTAGCTACCCAAATGGGTTTGGAAGAGCTTTTATTGTTA ATTGAATTAAAATGTTGTAATATTTTTAAGGCTTTAGTTTGTGCTATTTC ATTTTTAAGTGTATTTTGTATAAGTCAAATACAAGTCAAGAATGTGCTCA ATCACTATGGCTTATGATAGTAACTTTCAATTAATGAACAATTAGAAGTA ATACAATTTCTATGTAAGATTATACACAATAAAAATTCCTTTTTTTATCC CAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12177-RA | 1907 | CG12177-RA | 105..1907 | 1..1801 | 8945 | 99.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 13568628..13569482 | 1801..949 | 4210 | 99.8 | Minus |
chrX | 22417052 | chrX | 13570625..13571125 | 501..1 | 2490 | 99.8 | Minus |
chrX | 22417052 | chrX | 13569584..13570030 | 948..502 | 2235 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 13677894..13678753 | 1806..949 | 4235 | 99.8 | Minus |
X | 23542271 | X | 13679896..13680396 | 501..1 | 2490 | 99.8 | Minus |
X | 23542271 | X | 13678855..13679301 | 948..502 | 2235 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 13685992..13686851 | 1806..949 | 4245 | 99.7 | Minus |
X | 23527363 | X | 13687994..13688494 | 501..1 | 2490 | 99.8 | Minus |
X | 23527363 | X | 13686953..13687399 | 948..502 | 2235 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 13568628..13569482 | 949..1801 | 99 | <- | Minus |
chrX | 13569584..13570030 | 502..948 | 100 | <- | Minus |
chrX | 13570625..13571097 | 29..501 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12177-RA | 1..1089 | 244..1332 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12177-RA | 1..1089 | 244..1332 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12177-RA | 1..1089 | 244..1332 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12177-RA | 1..1089 | 244..1332 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12177-RA | 1..1089 | 244..1332 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12177-RA | 1..1803 | 1..1801 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12177-RA | 1..1803 | 1..1801 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12177-RA | 3..1805 | 1..1801 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12177-RA | 1..1803 | 1..1801 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12177-RA | 3..1805 | 1..1801 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 13677899..13678753 | 949..1801 | 99 | <- | Minus |
X | 13678855..13679301 | 502..948 | 100 | <- | Minus |
X | 13679896..13680396 | 1..501 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 13677899..13678753 | 949..1801 | 99 | <- | Minus |
X | 13678855..13679301 | 502..948 | 100 | <- | Minus |
X | 13679896..13680396 | 1..501 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 13677899..13678753 | 949..1801 | 99 | <- | Minus |
X | 13678855..13679301 | 502..948 | 100 | <- | Minus |
X | 13679896..13680396 | 1..501 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 13571932..13572786 | 949..1801 | 99 | <- | Minus |
arm_X | 13572888..13573334 | 502..948 | 100 | <- | Minus |
arm_X | 13573929..13574429 | 1..501 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 13685997..13686851 | 949..1801 | 99 | <- | Minus |
X | 13686953..13687399 | 502..948 | 100 | <- | Minus |
X | 13687994..13688494 | 1..501 | 99 | Minus |
Translation from 243 to 1331
> RE18811.hyp MADGRIVENGRGGGGEGVAAAPSPRYAILDCDGGSDDAWALLLLLHAAKS HGIHLLAITTMGCGNTSRENAARNMRRILDACKRTDIPIYLGAVDALIPS LEDEKKYFHGRDGFGDCLTDDCALQLEDIVQAEHAVTAIHDLCRSRPKQI TIFAVGPLTNLALGYTMYGPEFGNNFRDLFIMGGNYQGVGNSSRSAEFNF HSDPEAAHTVLLRTRCPITILPWEACLPERFNIHINWRLKDFAARAKEAG HPAITMLNQVEAAQWLPMIEQYGIDTWNPCDAIAVAVWLFEDHLIRRHNT WHATVDLRGTHTRGQMVLDHLREREKYPENVRIIELVDVEFFKRICEWIA GLDDGALLRDTQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12177-PC | 362 | CG12177-PC | 1..362 | 1..362 | 1949 | 100 | Plus |
CG12177-PB | 362 | CG12177-PB | 1..362 | 1..362 | 1949 | 100 | Plus |
CG12177-PA | 362 | CG12177-PA | 1..362 | 1..362 | 1949 | 100 | Plus |
CG11158-PA | 344 | CG11158-PA | 6..301 | 25..325 | 583 | 41.2 | Plus |
CG5418-PA | 355 | CG5418-PA | 10..351 | 25..362 | 570 | 38.7 | Plus |
Translation from 243 to 1331
> RE18811.pep MADGRIVENGRGGGGEGVAAAPSPRYAILDCDGGSDDAWALLLLLHAAKS HGIHLLAITTMGCGNTSRENAARNMRRILDACKRTDIPIYLGAVDALIPS LEDEKKYFHGRDGFGDCLTDDCALQLEDIVQAEHAVTAIHDLCRSRPKQI TIFAVGPLTNLALGYTMYGPEFGNNFRDLFIMGGNYQGVGNSSRSAEFNF HSDPEAAHTVLLRTRCPITILPWEACLPERFNIHINWRLKDFAARAKEAG HPAITMLNQVEAAQWLPMIEQYGIDTWNPCDAIAVAVWLFEDHLIRRHNT WHATVDLRGTHTRGQMVLDHLREREKYPENVRIIELVDVEFFKRICEWIA GLDDGALLRDTQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22351-PA | 366 | GF22351-PA | 1..366 | 1..362 | 1531 | 79.3 | Plus |
Dana\GF22595-PA | 358 | GF22595-PA | 16..347 | 25..357 | 580 | 38.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG19494-PA | 369 | GG19494-PA | 1..369 | 1..362 | 1696 | 90.8 | Plus |
Dere\GG17802-PA | 344 | GG17802-PA | 6..301 | 25..325 | 561 | 39.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH11940-PA | 343 | GH11940-PA | 3..339 | 18..355 | 1200 | 68.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12177-PC | 362 | CG12177-PC | 1..362 | 1..362 | 1949 | 100 | Plus |
CG12177-PB | 362 | CG12177-PB | 1..362 | 1..362 | 1949 | 100 | Plus |
CG12177-PA | 362 | CG12177-PA | 1..362 | 1..362 | 1949 | 100 | Plus |
CG11158-PA | 344 | CG11158-PA | 6..301 | 25..325 | 583 | 41.2 | Plus |
CG5418-PA | 355 | CG5418-PA | 10..351 | 25..362 | 570 | 38.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI14015-PA | 334 | GI14015-PA | 7..329 | 23..352 | 1138 | 66.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL19853-PA | 360 | GL19853-PA | 1..357 | 1..358 | 1450 | 76.9 | Plus |
Dper\GL19857-PA | 288 | GL19857-PA | 1..285 | 75..358 | 1234 | 79.3 | Plus |
Dper\GL18288-PA | 195 | GL18288-PA | 1..192 | 167..358 | 879 | 82.3 | Plus |
Dper\GL19860-PA | 356 | GL19860-PA | 6..353 | 20..362 | 604 | 38.3 | Plus |
Dper\GL11309-PA | 237 | GL11309-PA | 185..227 | 198..240 | 166 | 69.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA11456-PA | 360 | GA11456-PA | 1..357 | 1..358 | 1456 | 77.2 | Plus |
Dpse\GA28143-PA | 178 | GA28143-PA | 1..165 | 75..238 | 683 | 77.6 | Plus |
Dpse\GA10803-PA | 356 | GA10803-PA | 6..353 | 20..362 | 597 | 38 | Plus |
Dpse\GA24675-PA | 295 | GA24675-PA | 179..294 | 198..353 | 254 | 41.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM17597-PA | 361 | GM17597-PA | 1..361 | 1..362 | 1869 | 96.7 | Plus |
Dsec\GM17628-PA | 344 | GM17628-PA | 6..334 | 25..352 | 573 | 38.9 | Plus |
Dsec\GM26185-PA | 355 | GM26185-PA | 10..338 | 25..352 | 542 | 39.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD15879-PA | 361 | GD15879-PA | 1..361 | 1..362 | 1887 | 97.8 | Plus |
Dsim\GD22117-PA | 355 | GD22117-PA | 10..338 | 25..352 | 540 | 38.8 | Plus |
Dsim\GD17140-PA | 321 | GD17140-PA | 18..314 | 55..355 | 527 | 39.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK25228-PA | 335 | GK25228-PA | 3..332 | 25..352 | 1298 | 71.8 | Plus |
Dwil\GK25813-PA | 354 | GK25813-PA | 3..340 | 19..354 | 654 | 41.3 | Plus |
Dwil\GK11421-PA | 351 | GK11421-PA | 9..337 | 26..359 | 581 | 37.5 | Plus |