Clone RE18811 Report

Search the DGRC for RE18811

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:188
Well:11
Vector:pFlc-1
Associated Gene/TranscriptCG12177-RA
Protein status:RE18811.pep: gold
Preliminary Size:1100
Sequenced Size:1817

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12177 2002-01-01 Sim4 clustering to Release 2
CG12177 2003-01-01 Sim4 clustering to Release 3
CG12177 2004-08-12 Blastp of sequenced clone
CG12177 2008-04-29 Release 5.5 accounting
CG12177 2008-08-15 Release 5.9 accounting
CG12177 2008-12-18 5.12 accounting

Clone Sequence Records

RE18811.complete Sequence

1817 bp (1817 high quality bases) assembled on 2004-08-12

GenBank Submission: BT021941

> RE18811.complete
AGTGGAGTTTAGTTGAGTTGAGTCGGAGAACGAGCGTTATGAAATTCCGT
GATATGGTGCTCTGGTAATACCCATGCCCATACCCATGCCCCAGAACCAT
AACCAGAGCCAGAGGCACACTCATAACCGAGGCGAGCCGATAGACGAAGT
CCGGCGGCGGAGGCGACCAGATGATTGCCGTATGTGCATACTATATGGGT
AGTCCGTAGTCCGCTGTTCGGGCACATTCAACAATTGCCGGCGATGGCGG
ACGGACGCATAGTGGAAAACGGCAGAGGAGGAGGCGGTGAAGGAGTAGCA
GCAGCACCATCGCCCAGATACGCGATCCTCGACTGTGATGGGGGTAGCGA
CGATGCCTGGGCACTGCTCCTGCTTCTGCATGCGGCTAAGAGCCATGGGA
TTCATCTGCTGGCCATCACCACAATGGGATGCGGCAATACCAGCAGGGAG
AATGCGGCACGCAATATGCGACGGATTCTGGATGCCTGCAAGCGCACAGA
TATTCCCATATACCTGGGCGCCGTAGATGCCCTCATTCCCTCTCTGGAGG
ATGAAAAAAAGTATTTCCATGGCCGCGACGGATTCGGTGACTGTCTCACC
GACGACTGCGCTCTTCAGTTGGAGGACATCGTGCAGGCGGAGCACGCAGT
GACAGCCATCCATGATCTCTGCCGTTCCAGGCCCAAACAGATCACCATAT
TTGCCGTGGGCCCGCTGACGAATCTTGCCCTGGGCTATACGATGTACGGT
CCGGAGTTTGGGAATAACTTTCGTGATCTGTTCATTATGGGCGGCAACTA
TCAGGGCGTGGGCAACTCCTCGCGTTCGGCGGAGTTCAACTTTCACTCGG
ATCCGGAGGCGGCGCACACGGTGCTGCTGAGGACACGCTGTCCCATCACC
ATACTGCCGTGGGAGGCCTGCCTCCCGGAGAGATTCAATATACACATTAA
CTGGCGCCTGAAGGATTTCGCCGCAAGGGCCAAGGAAGCCGGACATCCAG
CAATTACCATGCTCAACCAGGTGGAAGCCGCCCAGTGGCTGCCAATGATC
GAGCAGTACGGGATCGATACGTGGAATCCATGCGATGCCATTGCCGTGGC
CGTTTGGCTATTCGAGGATCACTTGATCCGGAGGCACAACACCTGGCACG
CCACCGTGGATCTGCGGGGCACCCACACTCGCGGCCAGATGGTTCTCGAT
CATTTGCGGGAGCGCGAAAAGTATCCGGAGAACGTGCGCATTATCGAGCT
GGTGGATGTCGAGTTCTTTAAACGGATCTGCGAATGGATCGCCGGCTTGG
ATGACGGCGCCCTACTCCGCGACACTCAATAAATCCATATCTCTAGTAAT
TCCCGCCTTTTTCTTCGGCGCTATCATTTGATTCCCCCATTTATCAACGG
TTCACAATGGTTATGGGGGGGGGGGGGGTCTTGGCGATAAGAGTGCTTTT
GGAACAGGTGCACAACACGATCCATAGAGCAGTTCCGAGATGGCACCAAC
CTAATCGGAATTTAAGCTTTAAACACTTAATCGGTGATTAAGCGTAAGGT
TGCAAAATTGGCTAGCTACCCAAATGGGTTTGGAAGAGCTTTTATTGTTA
ATTGAATTAAAATGTTGTAATATTTTTAAGGCTTTAGTTTGTGCTATTTC
ATTTTTAAGTGTATTTTGTATAAGTCAAATACAAGTCAAGAATGTGCTCA
ATCACTATGGCTTATGATAGTAACTTTCAATTAATGAACAATTAGAAGTA
ATACAATTTCTATGTAAGATTATACACAATAAAAATTCCTTTTTTTATCC
CAAAAAAAAAAAAAAAA

RE18811.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:59:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG12177-RA 1907 CG12177-RA 105..1907 1..1801 8945 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:11:22
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 13568628..13569482 1801..949 4210 99.8 Minus
chrX 22417052 chrX 13570625..13571125 501..1 2490 99.8 Minus
chrX 22417052 chrX 13569584..13570030 948..502 2235 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:39:49 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:11:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13677894..13678753 1806..949 4235 99.8 Minus
X 23542271 X 13679896..13680396 501..1 2490 99.8 Minus
X 23542271 X 13678855..13679301 948..502 2235 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:47:43
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 13685992..13686851 1806..949 4245 99.7 Minus
X 23527363 X 13687994..13688494 501..1 2490 99.8 Minus
X 23527363 X 13686953..13687399 948..502 2235 100 Minus
Blast to na_te.dros performed on 2019-03-15 20:11:20 has no hits.

RE18811.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:12:27 Download gff for RE18811.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 13568628..13569482 949..1801 99 <- Minus
chrX 13569584..13570030 502..948 100 <- Minus
chrX 13570625..13571097 29..501 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:00:00 Download gff for RE18811.complete
Subject Subject Range Query Range Percent Splice Strand
CG12177-RA 1..1089 244..1332 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:33:24 Download gff for RE18811.complete
Subject Subject Range Query Range Percent Splice Strand
CG12177-RA 1..1089 244..1332 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:08:02 Download gff for RE18811.complete
Subject Subject Range Query Range Percent Splice Strand
CG12177-RA 1..1089 244..1332 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:17:16 Download gff for RE18811.complete
Subject Subject Range Query Range Percent Splice Strand
CG12177-RA 1..1089 244..1332 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:17:25 Download gff for RE18811.complete
Subject Subject Range Query Range Percent Splice Strand
CG12177-RA 1..1089 244..1332 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:39:13 Download gff for RE18811.complete
Subject Subject Range Query Range Percent Splice Strand
CG12177-RA 1..1803 1..1801 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:33:24 Download gff for RE18811.complete
Subject Subject Range Query Range Percent Splice Strand
CG12177-RA 1..1803 1..1801 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:08:02 Download gff for RE18811.complete
Subject Subject Range Query Range Percent Splice Strand
CG12177-RA 3..1805 1..1801 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:17:16 Download gff for RE18811.complete
Subject Subject Range Query Range Percent Splice Strand
CG12177-RA 1..1803 1..1801 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:17:25 Download gff for RE18811.complete
Subject Subject Range Query Range Percent Splice Strand
CG12177-RA 3..1805 1..1801 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:12:27 Download gff for RE18811.complete
Subject Subject Range Query Range Percent Splice Strand
X 13677899..13678753 949..1801 99 <- Minus
X 13678855..13679301 502..948 100 <- Minus
X 13679896..13680396 1..501 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:12:27 Download gff for RE18811.complete
Subject Subject Range Query Range Percent Splice Strand
X 13677899..13678753 949..1801 99 <- Minus
X 13678855..13679301 502..948 100 <- Minus
X 13679896..13680396 1..501 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:12:27 Download gff for RE18811.complete
Subject Subject Range Query Range Percent Splice Strand
X 13677899..13678753 949..1801 99 <- Minus
X 13678855..13679301 502..948 100 <- Minus
X 13679896..13680396 1..501 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:08:02 Download gff for RE18811.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 13571932..13572786 949..1801 99 <- Minus
arm_X 13572888..13573334 502..948 100 <- Minus
arm_X 13573929..13574429 1..501 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:54:20 Download gff for RE18811.complete
Subject Subject Range Query Range Percent Splice Strand
X 13685997..13686851 949..1801 99 <- Minus
X 13686953..13687399 502..948 100 <- Minus
X 13687994..13688494 1..501 99   Minus

RE18811.hyp Sequence

Translation from 243 to 1331

> RE18811.hyp
MADGRIVENGRGGGGEGVAAAPSPRYAILDCDGGSDDAWALLLLLHAAKS
HGIHLLAITTMGCGNTSRENAARNMRRILDACKRTDIPIYLGAVDALIPS
LEDEKKYFHGRDGFGDCLTDDCALQLEDIVQAEHAVTAIHDLCRSRPKQI
TIFAVGPLTNLALGYTMYGPEFGNNFRDLFIMGGNYQGVGNSSRSAEFNF
HSDPEAAHTVLLRTRCPITILPWEACLPERFNIHINWRLKDFAARAKEAG
HPAITMLNQVEAAQWLPMIEQYGIDTWNPCDAIAVAVWLFEDHLIRRHNT
WHATVDLRGTHTRGQMVLDHLREREKYPENVRIIELVDVEFFKRICEWIA
GLDDGALLRDTQ*

RE18811.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:04:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG12177-PC 362 CG12177-PC 1..362 1..362 1949 100 Plus
CG12177-PB 362 CG12177-PB 1..362 1..362 1949 100 Plus
CG12177-PA 362 CG12177-PA 1..362 1..362 1949 100 Plus
CG11158-PA 344 CG11158-PA 6..301 25..325 583 41.2 Plus
CG5418-PA 355 CG5418-PA 10..351 25..362 570 38.7 Plus

RE18811.pep Sequence

Translation from 243 to 1331

> RE18811.pep
MADGRIVENGRGGGGEGVAAAPSPRYAILDCDGGSDDAWALLLLLHAAKS
HGIHLLAITTMGCGNTSRENAARNMRRILDACKRTDIPIYLGAVDALIPS
LEDEKKYFHGRDGFGDCLTDDCALQLEDIVQAEHAVTAIHDLCRSRPKQI
TIFAVGPLTNLALGYTMYGPEFGNNFRDLFIMGGNYQGVGNSSRSAEFNF
HSDPEAAHTVLLRTRCPITILPWEACLPERFNIHINWRLKDFAARAKEAG
HPAITMLNQVEAAQWLPMIEQYGIDTWNPCDAIAVAVWLFEDHLIRRHNT
WHATVDLRGTHTRGQMVLDHLREREKYPENVRIIELVDVEFFKRICEWIA
GLDDGALLRDTQ*

RE18811.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:17:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22351-PA 366 GF22351-PA 1..366 1..362 1531 79.3 Plus
Dana\GF22595-PA 358 GF22595-PA 16..347 25..357 580 38.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:17:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19494-PA 369 GG19494-PA 1..369 1..362 1696 90.8 Plus
Dere\GG17802-PA 344 GG17802-PA 6..301 25..325 561 39.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 18:17:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11940-PA 343 GH11940-PA 3..339 18..355 1200 68.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:48:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG12177-PC 362 CG12177-PC 1..362 1..362 1949 100 Plus
CG12177-PB 362 CG12177-PB 1..362 1..362 1949 100 Plus
CG12177-PA 362 CG12177-PA 1..362 1..362 1949 100 Plus
CG11158-PA 344 CG11158-PA 6..301 25..325 583 41.2 Plus
CG5418-PA 355 CG5418-PA 10..351 25..362 570 38.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 18:17:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14015-PA 334 GI14015-PA 7..329 23..352 1138 66.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:17:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19853-PA 360 GL19853-PA 1..357 1..358 1450 76.9 Plus
Dper\GL19857-PA 288 GL19857-PA 1..285 75..358 1234 79.3 Plus
Dper\GL18288-PA 195 GL18288-PA 1..192 167..358 879 82.3 Plus
Dper\GL19860-PA 356 GL19860-PA 6..353 20..362 604 38.3 Plus
Dper\GL11309-PA 237 GL11309-PA 185..227 198..240 166 69.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:17:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11456-PA 360 GA11456-PA 1..357 1..358 1456 77.2 Plus
Dpse\GA28143-PA 178 GA28143-PA 1..165 75..238 683 77.6 Plus
Dpse\GA10803-PA 356 GA10803-PA 6..353 20..362 597 38 Plus
Dpse\GA24675-PA 295 GA24675-PA 179..294 198..353 254 41.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 18:17:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17597-PA 361 GM17597-PA 1..361 1..362 1869 96.7 Plus
Dsec\GM17628-PA 344 GM17628-PA 6..334 25..352 573 38.9 Plus
Dsec\GM26185-PA 355 GM26185-PA 10..338 25..352 542 39.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 18:18:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15879-PA 361 GD15879-PA 1..361 1..362 1887 97.8 Plus
Dsim\GD22117-PA 355 GD22117-PA 10..338 25..352 540 38.8 Plus
Dsim\GD17140-PA 321 GD17140-PA 18..314 55..355 527 39.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 18:18:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25228-PA 335 GK25228-PA 3..332 25..352 1298 71.8 Plus
Dwil\GK25813-PA 354 GK25813-PA 3..340 19..354 654 41.3 Plus
Dwil\GK11421-PA 351 GK11421-PA 9..337 26..359 581 37.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 18:18:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16146-PA 358 GE16146-PA 1..358 1..362 1723 93.6 Plus
Dyak\GE17098-PA 344 GE17098-PA 6..301 25..325 563 39.9 Plus