Clone RE18871 Report

Search the DGRC for RE18871

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:188
Well:71
Vector:pFlc-1
Associated Gene/TranscriptCcm3-RA
Protein status:RE18871.pep: gold
Preliminary Size:1336
Sequenced Size:1601

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5073 2002-01-01 Sim4 clustering to Release 2
CG5073 2003-01-01 Sim4 clustering to Release 3
CG5073 2003-08-11 Blastp of sequenced clone
CG5073 2008-04-29 Release 5.5 accounting
CG5073 2008-08-15 Release 5.9 accounting
CG5073 2008-12-18 5.12 accounting

Clone Sequence Records

RE18871.complete Sequence

1601 bp (1601 high quality bases) assembled on 2003-08-11

GenBank Submission: BT010269

> RE18871.complete
AGTTTCCAGTATTGAAAAACAACACTGTGCCTGTGCTGTTGTGAACAATT
TTTGTTAATTTTTTAATTTGATTTGCGAGCGTCGTGCGAGCGAAGCGACG
GACATCGCACGGAACGGGAATCGCAACTGGGTTCCTGCAGCATGCGCCAG
GATACCTAGGCACCAGTAGAGAAGACCAAGCACACTAGTAGCAATGACAA
TGGGCGAGCCCACGTCGTCTCTCGTTCTGCCCGTCATACTGCGGCCCATT
TTCTCCCAGCTCGAGCGACGCGACGTTGGCGCTGCCCAATCTCTGCGCTC
CGCCATTCTCAAGTCGGAGCAGAACAATCCGGGCTTCTGCTATGACCTCG
TAGCCACAATTGTGCGGCGGGCCGATCTGAATGTTAACCTAAACGAGGCC
GTGCTCCGATTGCAGGGCAAAATTACGGAAGCGGACCTCAATGAATACCG
CTTGACGCGCACGGAGGAGCCCTTCCAGGAGCTCAATCGTAAGTCCGTGG
CTCTCAAGGTGATCCTCAGCCGCATACCCGATGAGATAAACGACAGGAAG
ACCTTCCTGGAGACCATCAAGGAAATCGCCAGCGCCATAAAGAAACTACT
CGATGTGGTCAACGAGATCGGCTCGTTTATACCTGGCGTAACGGGCAAGC
AGGCTGTGGAGCAGCGTAAGAAGGAGTTCGTCAAATATTCCAAGAAGTTC
AGCACAACGCTGAAGGAGTACTTCAAAGAAGGACAACCGAATGCAGTATT
CATAAGTGCACTTTTTCTAATACGGCAAACGAATCAAATAATGCTGACAG
TTAAGAGTAAATGCGAGTAGAGAATTAAATCCTTTAATTATGGCAAATTA
ATTAATTAGTGGCATTTTAATTTTATGTTTAAATAACCATTTAACATACC
AAGACCGAAACAAATCAAATAAACTCAACACACTTAAATACAAAATCGCC
CGACGCAGTCCAAGTTAAATGTTTGAACGTAAATGAAAATCTGTTGTAAC
TAAATAAATAGGCCTAATTTATATCGTATACATATGTATTACACATACTC
GGACACAAAATTTTGCGAAGCCTAAGCATTGTAATTAACTAGTGAGCAAC
TATTTATGGAGACGGACGATGTGTGCGAGAGTTTATTTTTCGTTTACAAT
TTATTGTAAATAATTCATTCTTTTTCTGTTAACAAACAACATCGGCTAGT
TTGTTTTTGTTTAGGAGAAGCGCCTACGAATAAATTTAAAATTAGTGGAA
AAAAAACGAGAAACAGGAAATGTATGTACTACGGGGAGATGACAAACAAA
AACATTAACGGAACACTTAAATTTTTAACTGTTTTTAATTGTTAGAGTTT
GAAATTTAAACACTATACATAATAATCTTTTACTTAATGATATGTTCTAT
TTGAAAACTGCGAAAGCGAAAGACATTAGTGGCCGACAGCACTATCAACA
GGATGGAGAAAAAATTATTTTAATTAATAAAATGTTATATGAAAATCGAA
CACTAAGCAAAAGTAAAAGAACGGCAACAAACTCATAATGTAGACATAGC
GAAAAGAAAACGACAAATAAATGTATTTATATTCCAAAAAAAAAAAAAAA
A

RE18871.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:31:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG5073-RA 1622 CG5073-RA 25..1615 1..1589 7900 99.8 Plus
CG5073.a 1442 CG5073.a 257..1435 413..1589 5840 99.8 Plus
CG5073.a 1442 CG5073.a 1..259 1..259 1295 100 Plus
CG6136.a 2036 CG6136.a 1..218 218..1 1090 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:18:35
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 11198021..11198872 736..1585 4165 99.5 Plus
chr3R 27901430 chr3R 11196594..11196852 1..259 1295 100 Plus
chr3R 27901430 chr3R 11197027..11197207 257..437 905 100 Plus
chr3R 27901430 chr3R 11197484..11197648 571..735 795 98.8 Plus
chr3R 27901430 chr3R 11197266..11197399 438..571 670 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:39:52 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:18:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15373386..15374241 736..1589 4215 99.8 Plus
3R 32079331 3R 15371959..15372217 1..259 1295 100 Plus
3R 32079331 3R 15372392..15372572 257..437 905 100 Plus
3R 32079331 3R 15372849..15373013 571..735 825 100 Plus
3R 32079331 3R 15372631..15372764 438..571 670 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:00:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 15114217..15115072 736..1589 4225 99.7 Plus
3R 31820162 3R 15112790..15113048 1..259 1295 100 Plus
3R 31820162 3R 15113223..15113403 257..437 905 100 Plus
3R 31820162 3R 15113680..15113844 571..735 825 100 Plus
3R 31820162 3R 15113462..15113595 438..571 670 100 Plus
Blast to na_te.dros performed 2019-03-15 16:18:33
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy11 4428 gypsy11 GYPSY11 4428bp 3782..3846 1356..1289 116 67.6 Minus

RE18871.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:19:28 Download gff for RE18871.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 11196594..11196852 1..259 100 -> Plus
chr3R 11197030..11197207 260..437 100 -> Plus
chr3R 11197266..11197398 438..570 100 -> Plus
chr3R 11197484..11197648 571..735 98 -> Plus
chr3R 11198021..11198872 736..1585 96   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:00:03 Download gff for RE18871.complete
Subject Subject Range Query Range Percent Splice Strand
CG5073-RA 1..627 194..820 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:52:39 Download gff for RE18871.complete
Subject Subject Range Query Range Percent Splice Strand
CG5073-RA 1..627 194..820 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:00:11 Download gff for RE18871.complete
Subject Subject Range Query Range Percent Splice Strand
CG5073-RA 1..627 194..820 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:18:22 Download gff for RE18871.complete
Subject Subject Range Query Range Percent Splice Strand
CG5073-RA 1..627 194..820 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:33:34 Download gff for RE18871.complete
Subject Subject Range Query Range Percent Splice Strand
Ccm3-RA 1..627 194..820 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:16:12 Download gff for RE18871.complete
Subject Subject Range Query Range Percent Splice Strand
CG5073-RA 1..1587 1..1585 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:52:39 Download gff for RE18871.complete
Subject Subject Range Query Range Percent Splice Strand
CG5073-RA 1..1587 1..1585 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:00:11 Download gff for RE18871.complete
Subject Subject Range Query Range Percent Splice Strand
CG5073-RA 3..1589 1..1585 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:18:23 Download gff for RE18871.complete
Subject Subject Range Query Range Percent Splice Strand
CG5073-RA 1..1587 1..1585 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:33:34 Download gff for RE18871.complete
Subject Subject Range Query Range Percent Splice Strand
Ccm3-RA 3..1589 1..1585 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:19:28 Download gff for RE18871.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15372395..15372572 260..437 100 -> Plus
3R 15372631..15372763 438..570 100 -> Plus
3R 15372849..15373013 571..735 100 -> Plus
3R 15373386..15374237 736..1585 99   Plus
3R 15371959..15372217 1..259 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:19:28 Download gff for RE18871.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15372395..15372572 260..437 100 -> Plus
3R 15372631..15372763 438..570 100 -> Plus
3R 15372849..15373013 571..735 100 -> Plus
3R 15373386..15374237 736..1585 99   Plus
3R 15371959..15372217 1..259 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:19:28 Download gff for RE18871.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15372395..15372572 260..437 100 -> Plus
3R 15372631..15372763 438..570 100 -> Plus
3R 15372849..15373013 571..735 100 -> Plus
3R 15373386..15374237 736..1585 99   Plus
3R 15371959..15372217 1..259 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:00:11 Download gff for RE18871.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11199108..11199959 736..1585 99   Plus
arm_3R 11197681..11197939 1..259 100 -> Plus
arm_3R 11198117..11198294 260..437 100 -> Plus
arm_3R 11198353..11198485 438..570 100 -> Plus
arm_3R 11198571..11198735 571..735 100 -> Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:52:33 Download gff for RE18871.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15112790..15113048 1..259 100 -> Plus
3R 15113226..15113403 260..437 100 -> Plus
3R 15113462..15113594 438..570 100 -> Plus
3R 15113680..15113844 571..735 100 -> Plus
3R 15114217..15115068 736..1585 99   Plus

RE18871.hyp Sequence

Translation from 193 to 819

> RE18871.hyp
MTMGEPTSSLVLPVILRPIFSQLERRDVGAAQSLRSAILKSEQNNPGFCY
DLVATIVRRADLNVNLNEAVLRLQGKITEADLNEYRLTRTEEPFQELNRK
SVALKVILSRIPDEINDRKTFLETIKEIASAIKKLLDVVNEIGSFIPGVT
GKQAVEQRKKEFVKYSKKFSTTLKEYFKEGQPNAVFISALFLIRQTNQIM
LTVKSKCE*

RE18871.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:24:03
Subject Length Description Subject Range Query Range Score Percent Strand
Ccm3-PA 208 CG5073-PA 1..208 1..208 1026 100 Plus

RE18871.pep Sequence

Translation from 193 to 819

> RE18871.pep
MTMGEPTSSLVLPVILRPIFSQLERRDVGAAQSLRSAILKSEQNNPGFCY
DLVATIVRRADLNVNLNEAVLRLQGKITEADLNEYRLTRTEEPFQELNRK
SVALKVILSRIPDEINDRKTFLETIKEIASAIKKLLDVVNEIGSFIPGVT
GKQAVEQRKKEFVKYSKKFSTTLKEYFKEGQPNAVFISALFLIRQTNQIM
LTVKSKCE*

RE18871.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 02:15:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18295-PA 208 GF18295-PA 1..208 1..208 1061 98.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:15:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16923-PA 206 GG16923-PA 1..206 3..208 1067 100 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 02:15:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19073-PA 210 GH19073-PA 1..210 1..208 1054 97.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:24:23
Subject Length Description Subject Range Query Range Score Percent Strand
Ccm3-PA 208 CG5073-PA 1..208 1..208 1026 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 02:15:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23217-PA 210 GI23217-PA 1..210 1..208 1054 97.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 02:15:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24474-PA 210 GL24474-PA 1..210 1..208 1060 98.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 02:15:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24053-PA 210 GA24053-PA 1..210 1..208 1060 98.6 Plus
Dpse\GA18639-PA 210 GA18639-PA 1..210 1..208 1060 98.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:15:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24229-PA 206 GM24229-PA 1..206 3..208 1067 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:15:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19020-PA 206 GD19020-PA 1..206 3..208 1067 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 02:15:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22877-PA 210 GJ22877-PA 1..210 1..208 1054 97.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 02:15:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11661-PA 211 GK11661-PA 1..211 1..208 1057 97.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 02:15:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24306-PA 206 GE24306-PA 1..206 3..208 1067 100 Plus