BDGP Sequence Production Resources |
Search the DGRC for RE18871
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 188 |
Well: | 71 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Ccm3-RA |
Protein status: | RE18871.pep: gold |
Preliminary Size: | 1336 |
Sequenced Size: | 1601 |
Gene | Date | Evidence |
---|---|---|
CG5073 | 2002-01-01 | Sim4 clustering to Release 2 |
CG5073 | 2003-01-01 | Sim4 clustering to Release 3 |
CG5073 | 2003-08-11 | Blastp of sequenced clone |
CG5073 | 2008-04-29 | Release 5.5 accounting |
CG5073 | 2008-08-15 | Release 5.9 accounting |
CG5073 | 2008-12-18 | 5.12 accounting |
1601 bp (1601 high quality bases) assembled on 2003-08-11
GenBank Submission: BT010269
> RE18871.complete AGTTTCCAGTATTGAAAAACAACACTGTGCCTGTGCTGTTGTGAACAATT TTTGTTAATTTTTTAATTTGATTTGCGAGCGTCGTGCGAGCGAAGCGACG GACATCGCACGGAACGGGAATCGCAACTGGGTTCCTGCAGCATGCGCCAG GATACCTAGGCACCAGTAGAGAAGACCAAGCACACTAGTAGCAATGACAA TGGGCGAGCCCACGTCGTCTCTCGTTCTGCCCGTCATACTGCGGCCCATT TTCTCCCAGCTCGAGCGACGCGACGTTGGCGCTGCCCAATCTCTGCGCTC CGCCATTCTCAAGTCGGAGCAGAACAATCCGGGCTTCTGCTATGACCTCG TAGCCACAATTGTGCGGCGGGCCGATCTGAATGTTAACCTAAACGAGGCC GTGCTCCGATTGCAGGGCAAAATTACGGAAGCGGACCTCAATGAATACCG CTTGACGCGCACGGAGGAGCCCTTCCAGGAGCTCAATCGTAAGTCCGTGG CTCTCAAGGTGATCCTCAGCCGCATACCCGATGAGATAAACGACAGGAAG ACCTTCCTGGAGACCATCAAGGAAATCGCCAGCGCCATAAAGAAACTACT CGATGTGGTCAACGAGATCGGCTCGTTTATACCTGGCGTAACGGGCAAGC AGGCTGTGGAGCAGCGTAAGAAGGAGTTCGTCAAATATTCCAAGAAGTTC AGCACAACGCTGAAGGAGTACTTCAAAGAAGGACAACCGAATGCAGTATT CATAAGTGCACTTTTTCTAATACGGCAAACGAATCAAATAATGCTGACAG TTAAGAGTAAATGCGAGTAGAGAATTAAATCCTTTAATTATGGCAAATTA ATTAATTAGTGGCATTTTAATTTTATGTTTAAATAACCATTTAACATACC AAGACCGAAACAAATCAAATAAACTCAACACACTTAAATACAAAATCGCC CGACGCAGTCCAAGTTAAATGTTTGAACGTAAATGAAAATCTGTTGTAAC TAAATAAATAGGCCTAATTTATATCGTATACATATGTATTACACATACTC GGACACAAAATTTTGCGAAGCCTAAGCATTGTAATTAACTAGTGAGCAAC TATTTATGGAGACGGACGATGTGTGCGAGAGTTTATTTTTCGTTTACAAT TTATTGTAAATAATTCATTCTTTTTCTGTTAACAAACAACATCGGCTAGT TTGTTTTTGTTTAGGAGAAGCGCCTACGAATAAATTTAAAATTAGTGGAA AAAAAACGAGAAACAGGAAATGTATGTACTACGGGGAGATGACAAACAAA AACATTAACGGAACACTTAAATTTTTAACTGTTTTTAATTGTTAGAGTTT GAAATTTAAACACTATACATAATAATCTTTTACTTAATGATATGTTCTAT TTGAAAACTGCGAAAGCGAAAGACATTAGTGGCCGACAGCACTATCAACA GGATGGAGAAAAAATTATTTTAATTAATAAAATGTTATATGAAAATCGAA CACTAAGCAAAAGTAAAAGAACGGCAACAAACTCATAATGTAGACATAGC GAAAAGAAAACGACAAATAAATGTATTTATATTCCAAAAAAAAAAAAAAA A
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG5073-RA | 1622 | CG5073-RA | 25..1615 | 1..1589 | 7900 | 99.8 | Plus |
CG5073.a | 1442 | CG5073.a | 257..1435 | 413..1589 | 5840 | 99.8 | Plus |
CG5073.a | 1442 | CG5073.a | 1..259 | 1..259 | 1295 | 100 | Plus |
CG6136.a | 2036 | CG6136.a | 1..218 | 218..1 | 1090 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 11198021..11198872 | 736..1585 | 4165 | 99.5 | Plus |
chr3R | 27901430 | chr3R | 11196594..11196852 | 1..259 | 1295 | 100 | Plus |
chr3R | 27901430 | chr3R | 11197027..11197207 | 257..437 | 905 | 100 | Plus |
chr3R | 27901430 | chr3R | 11197484..11197648 | 571..735 | 795 | 98.8 | Plus |
chr3R | 27901430 | chr3R | 11197266..11197399 | 438..571 | 670 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 15373386..15374241 | 736..1589 | 4215 | 99.8 | Plus |
3R | 32079331 | 3R | 15371959..15372217 | 1..259 | 1295 | 100 | Plus |
3R | 32079331 | 3R | 15372392..15372572 | 257..437 | 905 | 100 | Plus |
3R | 32079331 | 3R | 15372849..15373013 | 571..735 | 825 | 100 | Plus |
3R | 32079331 | 3R | 15372631..15372764 | 438..571 | 670 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 15114217..15115072 | 736..1589 | 4225 | 99.7 | Plus |
3R | 31820162 | 3R | 15112790..15113048 | 1..259 | 1295 | 100 | Plus |
3R | 31820162 | 3R | 15113223..15113403 | 257..437 | 905 | 100 | Plus |
3R | 31820162 | 3R | 15113680..15113844 | 571..735 | 825 | 100 | Plus |
3R | 31820162 | 3R | 15113462..15113595 | 438..571 | 670 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 3782..3846 | 1356..1289 | 116 | 67.6 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 11196594..11196852 | 1..259 | 100 | -> | Plus |
chr3R | 11197030..11197207 | 260..437 | 100 | -> | Plus |
chr3R | 11197266..11197398 | 438..570 | 100 | -> | Plus |
chr3R | 11197484..11197648 | 571..735 | 98 | -> | Plus |
chr3R | 11198021..11198872 | 736..1585 | 96 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5073-RA | 1..627 | 194..820 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5073-RA | 1..627 | 194..820 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5073-RA | 1..627 | 194..820 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5073-RA | 1..627 | 194..820 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ccm3-RA | 1..627 | 194..820 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5073-RA | 1..1587 | 1..1585 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5073-RA | 1..1587 | 1..1585 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5073-RA | 3..1589 | 1..1585 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5073-RA | 1..1587 | 1..1585 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ccm3-RA | 3..1589 | 1..1585 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 15372395..15372572 | 260..437 | 100 | -> | Plus |
3R | 15372631..15372763 | 438..570 | 100 | -> | Plus |
3R | 15372849..15373013 | 571..735 | 100 | -> | Plus |
3R | 15373386..15374237 | 736..1585 | 99 | Plus | |
3R | 15371959..15372217 | 1..259 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 15372395..15372572 | 260..437 | 100 | -> | Plus |
3R | 15372631..15372763 | 438..570 | 100 | -> | Plus |
3R | 15372849..15373013 | 571..735 | 100 | -> | Plus |
3R | 15373386..15374237 | 736..1585 | 99 | Plus | |
3R | 15371959..15372217 | 1..259 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 15372395..15372572 | 260..437 | 100 | -> | Plus |
3R | 15372631..15372763 | 438..570 | 100 | -> | Plus |
3R | 15372849..15373013 | 571..735 | 100 | -> | Plus |
3R | 15373386..15374237 | 736..1585 | 99 | Plus | |
3R | 15371959..15372217 | 1..259 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 11199108..11199959 | 736..1585 | 99 | Plus | |
arm_3R | 11197681..11197939 | 1..259 | 100 | -> | Plus |
arm_3R | 11198117..11198294 | 260..437 | 100 | -> | Plus |
arm_3R | 11198353..11198485 | 438..570 | 100 | -> | Plus |
arm_3R | 11198571..11198735 | 571..735 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 15112790..15113048 | 1..259 | 100 | -> | Plus |
3R | 15113226..15113403 | 260..437 | 100 | -> | Plus |
3R | 15113462..15113594 | 438..570 | 100 | -> | Plus |
3R | 15113680..15113844 | 571..735 | 100 | -> | Plus |
3R | 15114217..15115068 | 736..1585 | 99 | Plus |
Translation from 193 to 819
> RE18871.hyp MTMGEPTSSLVLPVILRPIFSQLERRDVGAAQSLRSAILKSEQNNPGFCY DLVATIVRRADLNVNLNEAVLRLQGKITEADLNEYRLTRTEEPFQELNRK SVALKVILSRIPDEINDRKTFLETIKEIASAIKKLLDVVNEIGSFIPGVT GKQAVEQRKKEFVKYSKKFSTTLKEYFKEGQPNAVFISALFLIRQTNQIM LTVKSKCE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Ccm3-PA | 208 | CG5073-PA | 1..208 | 1..208 | 1026 | 100 | Plus |
Translation from 193 to 819
> RE18871.pep MTMGEPTSSLVLPVILRPIFSQLERRDVGAAQSLRSAILKSEQNNPGFCY DLVATIVRRADLNVNLNEAVLRLQGKITEADLNEYRLTRTEEPFQELNRK SVALKVILSRIPDEINDRKTFLETIKEIASAIKKLLDVVNEIGSFIPGVT GKQAVEQRKKEFVKYSKKFSTTLKEYFKEGQPNAVFISALFLIRQTNQIM LTVKSKCE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF18295-PA | 208 | GF18295-PA | 1..208 | 1..208 | 1061 | 98.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG16923-PA | 206 | GG16923-PA | 1..206 | 3..208 | 1067 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH19073-PA | 210 | GH19073-PA | 1..210 | 1..208 | 1054 | 97.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Ccm3-PA | 208 | CG5073-PA | 1..208 | 1..208 | 1026 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI23217-PA | 210 | GI23217-PA | 1..210 | 1..208 | 1054 | 97.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL24474-PA | 210 | GL24474-PA | 1..210 | 1..208 | 1060 | 98.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA24053-PA | 210 | GA24053-PA | 1..210 | 1..208 | 1060 | 98.6 | Plus |
Dpse\GA18639-PA | 210 | GA18639-PA | 1..210 | 1..208 | 1060 | 98.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM24229-PA | 206 | GM24229-PA | 1..206 | 3..208 | 1067 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD19020-PA | 206 | GD19020-PA | 1..206 | 3..208 | 1067 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ22877-PA | 210 | GJ22877-PA | 1..210 | 1..208 | 1054 | 97.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK11661-PA | 211 | GK11661-PA | 1..211 | 1..208 | 1057 | 97.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE24306-PA | 206 | GE24306-PA | 1..206 | 3..208 | 1067 | 100 | Plus |