Clone RE18955 Report

Search the DGRC for RE18955

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:189
Well:55
Vector:pFlc-1
Associated Gene/TranscriptTs-RA
Protein status:RE18955.pep: gold
Preliminary Size:966
Sequenced Size:1343

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3181 2002-01-01 Sim4 clustering to Release 2
CG3181 2002-02-22 Blastp of sequenced clone
CG3181 2003-01-01 Sim4 clustering to Release 3
Ts 2008-04-29 Release 5.5 accounting
Ts 2008-08-15 Release 5.9 accounting
Ts 2008-12-18 5.12 accounting

Clone Sequence Records

RE18955.complete Sequence

1343 bp (1343 high quality bases) assembled on 2002-02-22

GenBank Submission: AY089595

> RE18955.complete
AGTACTCGATTTATTTTGCGGGAAATATATACATACATTATTTTTGCGAA
ATGGTTTTAACACCAACGAAAGATGGGCCCGACCAGGAGAGCATGCCGTT
GCCGGCCGACAATGGGGAGTCACCAAGTAAACAGCAGGCCCCTGTCAATC
GGGATGAGATGCACTACTTGGATCTTCTGAGGCACATCATCGCAAATGGA
GAGCAGCGGATGGACCGCACGGAGGTGGGCACTCTGTCCGTGTTCGGCAG
TCAGATGCGCTTCGACATGCGGAACTCCTTTCCTTTGCTGACCACGAAGC
GCGTCTTCTTCCGCGCGGTGGCCGAGGAGCTGCTGTGGTTCGTGGCGGGC
AAGACGGACGCCAAGCTGCTGCAGGCGAAGAATGTGCACATCTGGGATGG
GAACAGCTCCAGAGAATTTCTGGACAAGATGGGGTTCACGGGGCGAGCCG
TTGGGGATCTGGGGCCGGTGTACGGCTTCCAATGGAGGCATTTCGGGGCG
CAGTACGGCACCTGCGACGACGACTACAGCGGCAAGGGGATCGACCAGCT
GCGCCAGGTGATCGACACCATCAGGAATAACCCCTCAGACCGTCGCATCA
TCATGTCGGCTTGGAATCCACTGGACATCCCAAAGATGGCCCTGCCGCCG
TGCCACTGCTTGGCGCAGTTTTACGTCTCCGAGAAGCGCGGTGAGCTTTC
GTGCCAGCTATACCAGAGAAGCGCAGACATGGGCCTGGGCGTACCCTTCA
ACATCGCCTCCTATGCCCTGCTCACCCACATGATTGCCCATGTGACGGGT
CTGAAGCCGGGCGACTTTGTTCACACCATGGGCGACACACACGTCTACCT
GAACCACGTAGAGCCGCTGAAGGAGCAACTGGAGCGCACACCGCGACCCT
TTCCCAAGCTGATCATTAAACGTCAGGTGCAGGACATCGAGGACTTCCGC
TTCGAGGACTTTCAGATAGTCGACTACAATCCACATCCAAAAATCCAAAT
GGACATGGCCGTGTAGGCGACCTTGAAATCAATAGTTCTGGCTTACTTGA
GCAAGCAGAATCTTCAACTGAGTAGGTCGCTCACAAATATCTTACTTTCG
TTTCAATTTCCAGAAAATTAAACGAAAATTGTTAACCATATATGTATACA
ATAAATATTATTATAGTCTTCACGGAAACAGTTTTTAAACACATCATTTC
ATAGCTTTATTTGAATAAATTTTTGCTTTCATTCATCGTGTGTAGTGTGT
GTTTGTTGTTTGTAAATTCTCAGAGTAATCCATAATGAAGTATAATTGAT
TCTTAATAAATCTTGCACAGAGTATACCAAAAAAAAAAAAAAA

RE18955.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:26:14
Subject Length Description Subject Range Query Range Score Percent Strand
Ts-RA 1328 Ts-RA 4..1328 4..1328 6625 100 Plus
Rbp9-RG 7024 Rbp9-RG 6878..7024 1333..1187 720 99.3 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:11:27
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 2967942..2969273 1328..4 6045 97 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:39:55 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:11:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2968288..2969617 1333..4 6635 99.9 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:55:09
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2968288..2969617 1333..4 6635 99.9 Minus
Blast to na_te.dros performed on 2019-03-15 20:11:26 has no hits.

RE18955.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:12:30 Download gff for RE18955.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 2967942..2968145 1116..1328 93 -> Minus
chr2L 2968162..2969276 1..1115 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:00:05 Download gff for RE18955.complete
Subject Subject Range Query Range Percent Splice Strand
Ts-RA 1..966 51..1016 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:40:02 Download gff for RE18955.complete
Subject Subject Range Query Range Percent Splice Strand
Ts-RA 1..966 51..1016 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:08:08 Download gff for RE18955.complete
Subject Subject Range Query Range Percent Splice Strand
Ts-RA 1..966 51..1016 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:09:47 Download gff for RE18955.complete
Subject Subject Range Query Range Percent Splice Strand
Ts-RA 1..966 51..1016 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:17:32 Download gff for RE18955.complete
Subject Subject Range Query Range Percent Splice Strand
Ts-RA 1..966 51..1016 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:04:59 Download gff for RE18955.complete
Subject Subject Range Query Range Percent Splice Strand
Ts-RA 1..1328 1..1328 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:40:02 Download gff for RE18955.complete
Subject Subject Range Query Range Percent Splice Strand
Ts-RA 1..1328 1..1328 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:08:08 Download gff for RE18955.complete
Subject Subject Range Query Range Percent Splice Strand
Ts-RA 19..1346 1..1328 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:09:47 Download gff for RE18955.complete
Subject Subject Range Query Range Percent Splice Strand
Ts-RA 1..1328 1..1328 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:17:32 Download gff for RE18955.complete
Subject Subject Range Query Range Percent Splice Strand
Ts-RA 19..1346 1..1328 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:12:30 Download gff for RE18955.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2968293..2969620 1..1328 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:12:30 Download gff for RE18955.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2968293..2969620 1..1328 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:12:30 Download gff for RE18955.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2968293..2969620 1..1328 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:08:08 Download gff for RE18955.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2968293..2969620 1..1328 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:44:00 Download gff for RE18955.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2968293..2969620 1..1328 99   Minus

RE18955.hyp Sequence

Translation from 2 to 1015

> RE18955.hyp
NSIYFAGNIYIHYFCEMVLTPTKDGPDQESMPLPADNGESPSKQQAPVNR
DEMHYLDLLRHIIANGEQRMDRTEVGTLSVFGSQMRFDMRNSFPLLTTKR
VFFRAVAEELLWFVAGKTDAKLLQAKNVHIWDGNSSREFLDKMGFTGRAV
GDLGPVYGFQWRHFGAQYGTCDDDYSGKGIDQLRQVIDTIRNNPSDRRII
MSAWNPLDIPKMALPPCHCLAQFYVSEKRGELSCQLYQRSADMGLGVPFN
IASYALLTHMIAHVTGLKPGDFVHTMGDTHVYLNHVEPLKEQLERTPRPF
PKLIIKRQVQDIEDFRFEDFQIVDYNPHPKIQMDMAV*

RE18955.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:11:27
Subject Length Description Subject Range Query Range Score Percent Strand
Ts-PB 321 CG3181-PB 1..321 17..337 1718 100 Plus
Ts-PA 321 CG3181-PA 1..321 17..337 1718 100 Plus

RE18955.pep Sequence

Translation from 50 to 1015

> RE18955.pep
MVLTPTKDGPDQESMPLPADNGESPSKQQAPVNRDEMHYLDLLRHIIANG
EQRMDRTEVGTLSVFGSQMRFDMRNSFPLLTTKRVFFRAVAEELLWFVAG
KTDAKLLQAKNVHIWDGNSSREFLDKMGFTGRAVGDLGPVYGFQWRHFGA
QYGTCDDDYSGKGIDQLRQVIDTIRNNPSDRRIIMSAWNPLDIPKMALPP
CHCLAQFYVSEKRGELSCQLYQRSADMGLGVPFNIASYALLTHMIAHVTG
LKPGDFVHTMGDTHVYLNHVEPLKEQLERTPRPFPKLIIKRQVQDIEDFR
FEDFQIVDYNPHPKIQMDMAV*

RE18955.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:20:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14907-PA 340 GF14907-PA 19..340 1..321 1435 81.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:21:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24473-PA 304 GG24473-PA 3..304 23..321 1449 87.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 00:21:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10649-PA 329 GH10649-PA 15..329 2..321 1326 75.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:40:51
Subject Length Description Subject Range Query Range Score Percent Strand
Ts-PB 321 CG3181-PB 1..321 1..321 1718 100 Plus
Ts-PA 321 CG3181-PA 1..321 1..321 1718 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:21:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10845-PA 310 GI10845-PA 8..310 23..321 1324 77.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:21:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26706-PA 330 GL26706-PA 16..330 4..321 1389 80.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:21:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16493-PA 330 GA16493-PA 16..330 4..321 1388 80.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:21:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18183-PA 321 GM18183-PA 1..321 1..321 1671 95.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:21:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22790-PA 321 GD22790-PA 1..321 1..321 1677 96.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:21:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18288-PA 348 GJ18288-PA 60..348 33..321 1274 77.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:21:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18389-PA 340 GK18389-PA 21..340 4..321 1388 78.4 Plus
Dwil\GK18710-PA 354 GK18710-PA 1..354 1..321 1355 72 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:21:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14974-PA 321 GE14974-PA 1..321 1..321 1564 89.4 Plus