BDGP Sequence Production Resources |
Search the DGRC for RE18955
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 189 |
Well: | 55 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Ts-RA |
Protein status: | RE18955.pep: gold |
Preliminary Size: | 966 |
Sequenced Size: | 1343 |
Gene | Date | Evidence |
---|---|---|
CG3181 | 2002-01-01 | Sim4 clustering to Release 2 |
CG3181 | 2002-02-22 | Blastp of sequenced clone |
CG3181 | 2003-01-01 | Sim4 clustering to Release 3 |
Ts | 2008-04-29 | Release 5.5 accounting |
Ts | 2008-08-15 | Release 5.9 accounting |
Ts | 2008-12-18 | 5.12 accounting |
1343 bp (1343 high quality bases) assembled on 2002-02-22
GenBank Submission: AY089595
> RE18955.complete AGTACTCGATTTATTTTGCGGGAAATATATACATACATTATTTTTGCGAA ATGGTTTTAACACCAACGAAAGATGGGCCCGACCAGGAGAGCATGCCGTT GCCGGCCGACAATGGGGAGTCACCAAGTAAACAGCAGGCCCCTGTCAATC GGGATGAGATGCACTACTTGGATCTTCTGAGGCACATCATCGCAAATGGA GAGCAGCGGATGGACCGCACGGAGGTGGGCACTCTGTCCGTGTTCGGCAG TCAGATGCGCTTCGACATGCGGAACTCCTTTCCTTTGCTGACCACGAAGC GCGTCTTCTTCCGCGCGGTGGCCGAGGAGCTGCTGTGGTTCGTGGCGGGC AAGACGGACGCCAAGCTGCTGCAGGCGAAGAATGTGCACATCTGGGATGG GAACAGCTCCAGAGAATTTCTGGACAAGATGGGGTTCACGGGGCGAGCCG TTGGGGATCTGGGGCCGGTGTACGGCTTCCAATGGAGGCATTTCGGGGCG CAGTACGGCACCTGCGACGACGACTACAGCGGCAAGGGGATCGACCAGCT GCGCCAGGTGATCGACACCATCAGGAATAACCCCTCAGACCGTCGCATCA TCATGTCGGCTTGGAATCCACTGGACATCCCAAAGATGGCCCTGCCGCCG TGCCACTGCTTGGCGCAGTTTTACGTCTCCGAGAAGCGCGGTGAGCTTTC GTGCCAGCTATACCAGAGAAGCGCAGACATGGGCCTGGGCGTACCCTTCA ACATCGCCTCCTATGCCCTGCTCACCCACATGATTGCCCATGTGACGGGT CTGAAGCCGGGCGACTTTGTTCACACCATGGGCGACACACACGTCTACCT GAACCACGTAGAGCCGCTGAAGGAGCAACTGGAGCGCACACCGCGACCCT TTCCCAAGCTGATCATTAAACGTCAGGTGCAGGACATCGAGGACTTCCGC TTCGAGGACTTTCAGATAGTCGACTACAATCCACATCCAAAAATCCAAAT GGACATGGCCGTGTAGGCGACCTTGAAATCAATAGTTCTGGCTTACTTGA GCAAGCAGAATCTTCAACTGAGTAGGTCGCTCACAAATATCTTACTTTCG TTTCAATTTCCAGAAAATTAAACGAAAATTGTTAACCATATATGTATACA ATAAATATTATTATAGTCTTCACGGAAACAGTTTTTAAACACATCATTTC ATAGCTTTATTTGAATAAATTTTTGCTTTCATTCATCGTGTGTAGTGTGT GTTTGTTGTTTGTAAATTCTCAGAGTAATCCATAATGAAGTATAATTGAT TCTTAATAAATCTTGCACAGAGTATACCAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 2967942..2969273 | 1328..4 | 6045 | 97 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 2968288..2969617 | 1333..4 | 6635 | 99.9 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 2968288..2969617 | 1333..4 | 6635 | 99.9 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 2967942..2968145 | 1116..1328 | 93 | -> | Minus |
chr2L | 2968162..2969276 | 1..1115 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ts-RA | 1..966 | 51..1016 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ts-RA | 1..966 | 51..1016 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ts-RA | 1..966 | 51..1016 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ts-RA | 1..966 | 51..1016 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ts-RA | 1..966 | 51..1016 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ts-RA | 1..1328 | 1..1328 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ts-RA | 1..1328 | 1..1328 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ts-RA | 19..1346 | 1..1328 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ts-RA | 1..1328 | 1..1328 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ts-RA | 19..1346 | 1..1328 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 2968293..2969620 | 1..1328 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 2968293..2969620 | 1..1328 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 2968293..2969620 | 1..1328 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 2968293..2969620 | 1..1328 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 2968293..2969620 | 1..1328 | 99 | Minus |
Translation from 2 to 1015
> RE18955.hyp NSIYFAGNIYIHYFCEMVLTPTKDGPDQESMPLPADNGESPSKQQAPVNR DEMHYLDLLRHIIANGEQRMDRTEVGTLSVFGSQMRFDMRNSFPLLTTKR VFFRAVAEELLWFVAGKTDAKLLQAKNVHIWDGNSSREFLDKMGFTGRAV GDLGPVYGFQWRHFGAQYGTCDDDYSGKGIDQLRQVIDTIRNNPSDRRII MSAWNPLDIPKMALPPCHCLAQFYVSEKRGELSCQLYQRSADMGLGVPFN IASYALLTHMIAHVTGLKPGDFVHTMGDTHVYLNHVEPLKEQLERTPRPF PKLIIKRQVQDIEDFRFEDFQIVDYNPHPKIQMDMAV*
Translation from 50 to 1015
> RE18955.pep MVLTPTKDGPDQESMPLPADNGESPSKQQAPVNRDEMHYLDLLRHIIANG EQRMDRTEVGTLSVFGSQMRFDMRNSFPLLTTKRVFFRAVAEELLWFVAG KTDAKLLQAKNVHIWDGNSSREFLDKMGFTGRAVGDLGPVYGFQWRHFGA QYGTCDDDYSGKGIDQLRQVIDTIRNNPSDRRIIMSAWNPLDIPKMALPP CHCLAQFYVSEKRGELSCQLYQRSADMGLGVPFNIASYALLTHMIAHVTG LKPGDFVHTMGDTHVYLNHVEPLKEQLERTPRPFPKLIIKRQVQDIEDFR FEDFQIVDYNPHPKIQMDMAV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF14907-PA | 340 | GF14907-PA | 19..340 | 1..321 | 1435 | 81.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG24473-PA | 304 | GG24473-PA | 3..304 | 23..321 | 1449 | 87.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH10649-PA | 329 | GH10649-PA | 15..329 | 2..321 | 1326 | 75.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Ts-PB | 321 | CG3181-PB | 1..321 | 1..321 | 1718 | 100 | Plus |
Ts-PA | 321 | CG3181-PA | 1..321 | 1..321 | 1718 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI10845-PA | 310 | GI10845-PA | 8..310 | 23..321 | 1324 | 77.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL26706-PA | 330 | GL26706-PA | 16..330 | 4..321 | 1389 | 80.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA16493-PA | 330 | GA16493-PA | 16..330 | 4..321 | 1388 | 80.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM18183-PA | 321 | GM18183-PA | 1..321 | 1..321 | 1671 | 95.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD22790-PA | 321 | GD22790-PA | 1..321 | 1..321 | 1677 | 96.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ18288-PA | 348 | GJ18288-PA | 60..348 | 33..321 | 1274 | 77.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK18389-PA | 340 | GK18389-PA | 21..340 | 4..321 | 1388 | 78.4 | Plus |
Dwil\GK18710-PA | 354 | GK18710-PA | 1..354 | 1..321 | 1355 | 72 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE14974-PA | 321 | GE14974-PA | 1..321 | 1..321 | 1564 | 89.4 | Plus |