BDGP Sequence Production Resources |
Search the DGRC for RE19105
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 191 |
Well: | 5 |
Vector: | pFlc-1 |
Associated Gene/Transcript | fbp-RA |
Protein status: | RE19105.pep: gold |
Sequenced Size: | 1214 |
Gene | Date | Evidence |
---|---|---|
fbp-RB | 2009-06-22 | Replacement based on scoring |
1214 bp assembled on 2009-08-05
GenBank Submission: BT089035.1
> RE19105.complete AGTGTCTTTAGATCAGCCGTCGACCGCGGTTCGTTGTTTGTTTGCCAGAG TTTGTCGATTTGTTGAACCGCACCATTTACAGAGCGTACTGCAACTACAT ACATATAACCAATAATGGCGGCCAGTAGCGGTGATTCCAAAATGACCCAA CAGAGGCCAGCTTTCGACTCCAATGCGATGACGCTGACGCGTTTCGTGCT GCAGGAGCAGCGAAAGTTCAAGAGCGCCACTGGCGATCTCTCCCAGCTGC TCAACTCCATCCAGACCGCCATCAAGGCTACATCATCCGCGGTGCGGAAG GCAGGTATCGCCAAGCTCCATGGATTCGCTGGCGACGTGAATGTCCAAGG CGAGGAGGTCAAGAAACTGGACGTGCTCTCCAACGAGCTGTTCATCAACA TGCTGAAGTCATCCTATACCACATGTCTAATGGTTTCCGAGGAGAACGAG AATGTGATCGAGGTGGAAGTGGAGAAACAGGGCAAATACATCGTGTGCTT CGATCCCTTGGATGGATCCTCCAACATAGACTGCCTGGTGTCGATCGGTT CAATCTTCGCCATTTACCGCAAGAAAAGCGATGGTCCGCCCACAGTGGAG GATGCACTGCAGCCCGGAAATCAGCTGGTGGCCGCCGGCTACGCGCTATA CGGTTCGGCCACAGCAATTGTCCTGGGTCTGGGTTCGGGAGTGAATGGCT TCACTTATGACCCGGCCATCGGAGAGTTCGTGCTGACCGATCCCAACATG CGGGTGCCGGAGAAGGGAAAGATATACTCTATCAACGAGGGATATGCAGC GGATTGGGAGGATGGTGTCTTCAACTACATTGCGGCCAAGAAGGATCCCG CCAAGGGAAAGCCCTATGGAGCGCGGTACGTGGGTTCCATGGTCGCGGAT GTGCATCGCACCATTAAATACGGCGGCATCTTTATCTATCCGGCAACAAA GTCCGCTCCCAGCGGAAAACTTCGTCTGCTGTACGAGTGCGTGCCCATGG CCTATCTGATGATCCAGGCTGGAGGTCTGGCCAGCGACGGAAAGATCAGC ATTTTGGACATTGTGCCCAAGAAGATCCACGAGCGCAGTCCCATATTCCT AGGATCCAAGTCCGACGTGGAGGAGGCACTTAGCTACTTAAAGTGATTGT TGTGACTACAGTAACGTATCAATAAAGATCAATTATATTTTTTACTAAGA AAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
fbp-RB | 1278 | fbp-RB | 21..1222 | 1..1202 | 5995 | 99.9 | Plus |
fbp.c | 1198 | fbp.c | 56..1193 | 65..1202 | 5690 | 100 | Plus |
fbp-RA | 1297 | fbp-RA | 174..1241 | 135..1202 | 5340 | 100 | Plus |
fbp-RA | 1297 | fbp-RA | 112..175 | 1..64 | 305 | 98.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 19760109..19760830 | 1199..478 | 3580 | 99.7 | Minus |
chr2L | 23010047 | chr2L | 19761009..19761353 | 481..137 | 1710 | 99.7 | Minus |
chr2L | 23010047 | chr2L | 19761948..19762019 | 136..65 | 360 | 100 | Minus |
chr2L | 23010047 | chr2L | 19762591..19762655 | 65..1 | 310 | 98.5 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 19761584..19762308 | 1202..478 | 3625 | 100 | Minus |
2L | 23513712 | 2L | 19762487..19762831 | 481..137 | 1725 | 100 | Minus |
2L | 23513712 | 2L | 19763426..19763497 | 136..65 | 360 | 100 | Minus |
2L | 23513712 | 2L | 19764069..19764133 | 65..1 | 310 | 98.5 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 19761584..19762308 | 1202..478 | 3625 | 100 | Minus |
2L | 23513712 | 2L | 19762487..19762831 | 481..137 | 1725 | 100 | Minus |
2L | 23513712 | 2L | 19763426..19763497 | 136..65 | 360 | 100 | Minus |
2L | 23513712 | 2L | 19764069..19764133 | 65..1 | 310 | 98.4 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 3384..3449 | 595..659 | 110 | 68.7 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 19760109..19760827 | 481..1199 | 99 | <- | Minus |
chr2L | 19761010..19761353 | 137..480 | 99 | <- | Minus |
chr2L | 19761948..19762019 | 65..136 | 100 | <- | Minus |
chr2L | 19762592..19762655 | 1..64 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
fbp-RB | 1..1032 | 115..1146 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
fbp-RB | 1..1032 | 115..1146 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
fbp-RA | 1..1005 | 142..1146 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
fbp-RA | 1..1005 | 142..1146 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
fbp-RB | 2..1200 | 1..1199 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
fbp-RB | 2..1200 | 1..1199 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
fbp-RE | 4..1202 | 1..1199 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
fbp-RE | 4..1202 | 1..1199 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 19761587..19762305 | 481..1199 | 100 | <- | Minus |
2L | 19762488..19762831 | 137..480 | 100 | <- | Minus |
2L | 19763426..19763497 | 65..136 | 100 | <- | Minus |
2L | 19764070..19764133 | 1..64 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 19761587..19762305 | 481..1199 | 100 | <- | Minus |
2L | 19762488..19762831 | 137..480 | 100 | <- | Minus |
2L | 19763426..19763497 | 65..136 | 100 | <- | Minus |
2L | 19764070..19764133 | 1..64 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 19761587..19762305 | 481..1199 | 100 | <- | Minus |
2L | 19762488..19762831 | 137..480 | 100 | <- | Minus |
2L | 19763426..19763497 | 65..136 | 100 | <- | Minus |
2L | 19764070..19764133 | 1..64 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 19762488..19762831 | 137..480 | 100 | <- | Minus |
arm_2L | 19761587..19762305 | 481..1199 | 100 | <- | Minus |
arm_2L | 19763426..19763497 | 65..136 | 100 | <- | Minus |
arm_2L | 19764070..19764133 | 1..64 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 19764070..19764133 | 1..64 | 98 | Minus | |
2L | 19761587..19762305 | 481..1199 | 100 | <- | Minus |
2L | 19762488..19762831 | 137..480 | 100 | <- | Minus |
2L | 19763426..19763497 | 65..136 | 100 | <- | Minus |
Translation from 114 to 1145
> RE19105.hyp MAASSGDSKMTQQRPAFDSNAMTLTRFVLQEQRKFKSATGDLSQLLNSIQ TAIKATSSAVRKAGIAKLHGFAGDVNVQGEEVKKLDVLSNELFINMLKSS YTTCLMVSEENENVIEVEVEKQGKYIVCFDPLDGSSNIDCLVSIGSIFAI YRKKSDGPPTVEDALQPGNQLVAAGYALYGSATAIVLGLGSGVNGFTYDP AIGEFVLTDPNMRVPEKGKIYSINEGYAADWEDGVFNYIAAKKDPAKGKP YGARYVGSMVADVHRTIKYGGIFIYPATKSAPSGKLRLLYECVPMAYLMI QAGGLASDGKISILDIVPKKIHERSPIFLGSKSDVEEALSYLK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
fbp-PE | 334 | CG31692-PE | 1..334 | 10..343 | 1702 | 100 | Plus |
fbp-PA | 334 | CG31692-PA | 1..334 | 10..343 | 1702 | 100 | Plus |
fbp-PD | 322 | CG31692-PD | 1..322 | 22..343 | 1640 | 100 | Plus |
fbp-PC | 322 | CG31692-PC | 1..322 | 22..343 | 1640 | 100 | Plus |
Translation from 114 to 1145
> RE19105.pep MAASSGDSKMTQQRPAFDSNAMTLTRFVLQEQRKFKSATGDLSQLLNSIQ TAIKATSSAVRKAGIAKLHGFAGDVNVQGEEVKKLDVLSNELFINMLKSS YTTCLMVSEENENVIEVEVEKQGKYIVCFDPLDGSSNIDCLVSIGSIFAI YRKKSDGPPTVEDALQPGNQLVAAGYALYGSATAIVLGLGSGVNGFTYDP AIGEFVLTDPNMRVPEKGKIYSINEGYAADWEDGVFNYIAAKKDPAKGKP YGARYVGSMVADVHRTIKYGGIFIYPATKSAPSGKLRLLYECVPMAYLMI QAGGLASDGKISILDIVPKKIHERSPIFLGSKSDVEEALSYLK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF15476-PA | 343 | GF15476-PA | 1..343 | 1..343 | 1648 | 93.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG21609-PA | 343 | GG21609-PA | 1..343 | 1..343 | 1777 | 97.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH13045-PA | 343 | GH13045-PA | 1..343 | 1..343 | 1605 | 90.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
fbp-PF | 343 | CG31692-PF | 1..343 | 1..343 | 1744 | 100 | Plus |
fbp-PA | 334 | CG31692-PA | 1..334 | 10..343 | 1702 | 100 | Plus |
fbp-PD | 322 | CG31692-PD | 1..322 | 22..343 | 1640 | 100 | Plus |
fbp-PC | 322 | CG31692-PC | 1..322 | 22..343 | 1640 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI18191-PA | 343 | GI18191-PA | 1..343 | 1..343 | 1631 | 92.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL25621-PA | 344 | GL25621-PA | 1..344 | 1..343 | 1683 | 92.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA16400-PA | 344 | GA16400-PA | 1..344 | 1..343 | 1683 | 92.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM16988-PA | 343 | GM16988-PA | 1..343 | 1..343 | 1792 | 98.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD21735-PA | 342 | GD21735-PA | 1..337 | 1..337 | 1765 | 99.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ14680-PA | 343 | GJ14680-PA | 1..343 | 1..343 | 1640 | 93.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK15219-PA | 344 | GK15219-PA | 1..344 | 1..343 | 1626 | 92.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE12630-PA | 343 | GE12630-PA | 1..343 | 1..343 | 1781 | 98.3 | Plus |