BDGP Sequence Production Resources |
Search the DGRC for RE19116
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 191 |
Well: | 16 |
Vector: | pFlc-1 |
Associated Gene/Transcript | E(spl)m3-HLH-RA |
Protein status: | RE19116.pep: gold |
Preliminary Size: | 1422 |
Sequenced Size: | 1322 |
Gene | Date | Evidence |
---|---|---|
CG8346 | 2002-01-01 | Sim4 clustering to Release 2 |
CG8346 | 2002-03-28 | Blastp of sequenced clone |
CG8346 | 2003-01-01 | Sim4 clustering to Release 3 |
HLHm3 | 2008-04-29 | Release 5.5 accounting |
HLHm3 | 2008-08-15 | Release 5.9 accounting |
HLHm3 | 2008-12-18 | 5.12 accounting |
1322 bp (1322 high quality bases) assembled on 2002-03-28
GenBank Submission: AY094858
> RE19116.complete AGTCATTTCGTAAAAGTGCCGCCACTCGAACGCACCGCAATCGGTGGAAC GCGCAACGCACGCGCAACAAACTCGTCAAAAAGTAACCAATCTATGAAAC CAACCAAAATCAGTAGTGATAATGTGCAGTTGAGAGACTAAATACAAAAG AACAATCCTTAAAGTACACAACATAAAACAACCCAATCGATCATGGTCAT GGAGATGTCCAAGACGTATCAGTACCGCAAGGTGATGAAGCCGCTGCTGG AGCGCAAACGGCGAGCCAGGATCAACAAGTGTCTGGACGATCTCAAGGAT CTGATGGTGGAGTGCCTGCAGCAGGAGGGCGAGCACGTCACCCGGCTGGA GAAGGCGGATATCCTGGAGTTGACCGTGGATCACATGAGGAAACTCAAGC AGCGGGGTGGTCTTTCGCTGCAGGGAGTAGTGGCTGGTGTTGGCAGCCCA CCCACCTCAACCAGTACCGCCCACGTGGAGTCCTTTCGCTCCGGCTATGT GCATGCTGCCGATCAGATTACCCAGGTCCTGCTGCAGACACAGCAAACCG ATGAGATTGGGCGCAAGATAATGAAATTCCTATCGACGCGACTAATTGAG CTGCAGACGCAGTTGCTCCAGCAGCAGCAGCAACAGCAACAACACCAGCA GCAGCAAATACCGCAATCATCAGGCCGCCTAGCCTTCCCGCTGCTGGGAG GATATGGACCGGCAGCCGCCGCTGCCGCCATTAGTTACAGCTCCTTCCTG ACCAGCAAGGACGAACTGATCGATGTGACATCCGTCGATGGCAATGCGTT ATCCGAGACGGCGTCGGTTAGCTCGCAGGAGTCCGGCGCCTCTGAGCCCG TCTGGAGGCCCTGGTAATTGGGCGTGCCCAATATGGATCTTATCCCTAAT ATTATAATCGCAACCCAAAAAAATGGCTATTGACCGTTCTGCAACAAGAT CCGTTGTCTTCCAAAGTAAATCATATCAACCTAAGTTAATTGAGGTCTAA TCGATTTCTGAATGGTTTTGAAATACTTTTAGTTTTAGTTCCGATAATGG TAATTTGTAAATTAATTGTTTAATTTCAACTGTGATATAACTAAAGTACG TTGATCAATCAATCAGTGAATATATATTCGAGTGCGCTATTTTCCTACTC CAAAAGTTCCCTAAGTTTAATATCTCGTTGCGCTCTCTTTATTGTTTAGC ATATATTAAGCTTTAAATAATTTATAAATGTTAATTTATGATTAGTTGAG AAAGAATAATCAAAAATACCCTACCCAAATAAAATAAATGATTTTAATTG AAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
HLHm3-RA | 1422 | HLHm3-RA | 116..1417 | 3..1304 | 6465 | 99.7 | Plus |
HLHmbeta-RA | 1098 | HLHmbeta-RA | 143..336 | 199..392 | 640 | 88.6 | Plus |
HLHmgamma-RA | 904 | HLHmgamma-RA | 107..213 | 202..308 | 340 | 87.8 | Plus |
HLHmgamma-RA | 904 | HLHmgamma-RA | 230..273 | 325..368 | 160 | 90.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 21844817..21846112 | 3..1300 | 6260 | 99.2 | Plus |
chr3R | 27901430 | chr3R | 21828674..21828867 | 392..199 | 640 | 88.7 | Minus |
chr3R | 27901430 | chr3R | 21822953..21823119 | 202..368 | 430 | 83.8 | Plus |
chr3R | 27901430 | chr3R | 21860162..21860275 | 202..315 | 375 | 88.6 | Plus |
chr3R | 27901430 | chr3R | 21820745..21820917 | 205..377 | 235 | 75.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 26021830..26023131 | 3..1304 | 6465 | 99.8 | Plus |
3R | 32079331 | 3R | 26005688..26005881 | 392..199 | 640 | 88.7 | Minus |
3R | 32079331 | 3R | 25999964..26000130 | 202..368 | 430 | 83.8 | Plus |
3R | 32079331 | 3R | 26037178..26037291 | 202..315 | 375 | 88.6 | Plus |
3R | 32079331 | 3R | 25997756..25997928 | 205..377 | 235 | 75.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 25762661..25763962 | 3..1304 | 6465 | 99.7 | Plus |
3R | 31820162 | 3R | 25746519..25746712 | 392..199 | 640 | 88.6 | Minus |
3R | 31820162 | 3R | 25778009..25778122 | 202..315 | 375 | 88.5 | Plus |
3R | 31820162 | 3R | 25740795..25740901 | 202..308 | 340 | 87.8 | Plus |
3R | 31820162 | 3R | 25738587..25738693 | 205..311 | 220 | 80.3 | Plus |
3R | 31820162 | 3R | 25740918..25740961 | 325..368 | 160 | 90.9 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 21844815..21846112 | 1..1300 | 94 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
HLHm3-RA | 1..675 | 193..867 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
HLHm3-RA | 1..675 | 193..867 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
E(spl)m3-HLH-RA | 1..675 | 193..867 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
HLHm3-RA | 1..675 | 193..867 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
E(spl)m3-HLH-RA | 1..675 | 193..867 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
HLHm3-RA | 114..1413 | 1..1300 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
HLHm3-RA | 114..1413 | 1..1300 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
E(spl)m3-HLH-RA | 6..1305 | 1..1300 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
HLHm3-RA | 114..1413 | 1..1300 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
E(spl)m3-HLH-RA | 6..1305 | 1..1300 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 26021828..26023127 | 1..1300 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 26021828..26023127 | 1..1300 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 26021828..26023127 | 1..1300 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 21847550..21848849 | 1..1300 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 25762659..25763958 | 1..1300 | 99 | Plus |
Translation from 192 to 866
> RE19116.hyp MVMEMSKTYQYRKVMKPLLERKRRARINKCLDDLKDLMVECLQQEGEHVT RLEKADILELTVDHMRKLKQRGGLSLQGVVAGVGSPPTSTSTAHVESFRS GYVHAADQITQVLLQTQQTDEIGRKIMKFLSTRLIELQTQLLQQQQQQQQ HQQQQIPQSSGRLAFPLLGGYGPAAAAAAISYSSFLTSKDELIDVTSVDG NALSETASVSSQESGASEPVWRPW*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
E(spl)m3-HLH-PA | 224 | CG8346-PA | 1..224 | 1..224 | 1125 | 100 | Plus |
E(spl)mbeta-HLH-PA | 195 | CG14548-PA | 5..195 | 3..224 | 422 | 45.5 | Plus |
E(spl)mgamma-HLH-PA | 205 | CG8333-PA | 8..205 | 4..224 | 353 | 42 | Plus |
E(spl)m7-HLH-PA | 186 | CG8361-PA | 6..186 | 4..224 | 323 | 38.5 | Plus |
E(spl)mdelta-HLH-PA | 173 | CG8328-PA | 9..136 | 5..140 | 252 | 42.3 | Plus |
Translation from 192 to 866
> RE19116.pep MVMEMSKTYQYRKVMKPLLERKRRARINKCLDDLKDLMVECLQQEGEHVT RLEKADILELTVDHMRKLKQRGGLSLQGVVAGVGSPPTSTSTAHVESFRS GYVHAADQITQVLLQTQQTDEIGRKIMKFLSTRLIELQTQLLQQQQQQQQ HQQQQIPQSSGRLAFPLLGGYGPAAAAAAISYSSFLTSKDELIDVTSVDG NALSETASVSSQESGASEPVWRPW*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16799-PA | 224 | GF16799-PA | 1..224 | 1..224 | 870 | 88 | Plus |
Dana\GF18225-PA | 200 | GF18225-PA | 5..196 | 3..224 | 417 | 43.8 | Plus |
Dana\GF16796-PA | 205 | GF16796-PA | 11..205 | 7..224 | 341 | 40.1 | Plus |
Dana\GF16801-PA | 180 | GF16801-PA | 6..123 | 4..138 | 322 | 52.2 | Plus |
Dana\GF16795-PA | 182 | GF16795-PA | 9..137 | 5..141 | 253 | 41.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG11454-PA | 226 | GG11454-PA | 1..226 | 1..224 | 1149 | 97.8 | Plus |
Dere\GG12207-PA | 195 | GG12207-PA | 5..195 | 3..224 | 407 | 44.4 | Plus |
Dere\GG11450-PA | 205 | GG11450-PA | 8..205 | 4..224 | 360 | 40.9 | Plus |
Dere\GG11458-PA | 186 | GG11458-PA | 6..131 | 4..145 | 320 | 50.3 | Plus |
Dere\GG11449-PA | 173 | GG11449-PA | 9..134 | 5..138 | 256 | 43 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH19456-PA | 228 | GH19456-PA | 1..228 | 1..224 | 790 | 82.7 | Plus |
Dgri\GH18148-PA | 210 | GH18148-PA | 5..210 | 3..224 | 408 | 42.6 | Plus |
Dgri\GH19452-PA | 217 | GH19452-PA | 11..135 | 7..138 | 349 | 58.6 | Plus |
Dgri\GH19458-PA | 207 | GH19458-PA | 6..207 | 4..224 | 345 | 39.6 | Plus |
Dgri\GH19451-PA | 198 | GH19451-PA | 9..158 | 5..141 | 245 | 38.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
E(spl)m3-HLH-PA | 224 | CG8346-PA | 1..224 | 1..224 | 1125 | 100 | Plus |
E(spl)mbeta-HLH-PA | 195 | CG14548-PA | 5..195 | 3..224 | 422 | 45.5 | Plus |
E(spl)mgamma-HLH-PA | 205 | CG8333-PA | 8..205 | 4..224 | 353 | 42 | Plus |
E(spl)m7-HLH-PA | 186 | CG8361-PA | 6..186 | 4..224 | 323 | 38.5 | Plus |
E(spl)mdelta-HLH-PA | 173 | CG8328-PA | 9..136 | 5..140 | 252 | 42.3 | Plus |
E(spl)m5-HLH-PA | 178 | CG6096-PA | 12..154 | 5..171 | 194 | 33.9 | Plus |
E(spl)m8-HLH-PA | 179 | CG8365-PA | 5..179 | 6..224 | 193 | 27.7 | Plus |
dpn-PA | 435 | CG8704-PA | 39..158 | 10..143 | 192 | 33.6 | Plus |
h-PB | 337 | CG6494-PB | 32..156 | 12..150 | 189 | 32.1 | Plus |
h-PA | 337 | CG6494-PA | 32..156 | 12..150 | 189 | 32.1 | Plus |
Hesr-PA | 149 | CG5927-PA | 16..116 | 6..113 | 183 | 35.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI24690-PA | 229 | GI24690-PA | 1..229 | 1..224 | 816 | 81.5 | Plus |
Dmoj\GI22910-PA | 210 | GI22910-PA | 5..210 | 3..224 | 402 | 42.3 | Plus |
Dmoj\GI24686-PA | 217 | GI24686-PA | 6..217 | 2..224 | 374 | 41.7 | Plus |
Dmoj\GI24692-PA | 207 | GI24692-PA | 6..130 | 4..138 | 323 | 51.5 | Plus |
Dmoj\GI24685-PA | 185 | GI24685-PA | 9..185 | 5..224 | 252 | 33.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21819-PA | 225 | GL21819-PA | 1..225 | 1..224 | 949 | 90.7 | Plus |
Dper\GL22021-PA | 200 | GL22021-PA | 5..200 | 3..224 | 407 | 42.3 | Plus |
Dper\GL21815-PA | 214 | GL21815-PA | 6..214 | 2..224 | 359 | 39.3 | Plus |
Dper\GL21822-PA | 207 | GL21822-PA | 6..133 | 4..138 | 297 | 48.9 | Plus |
Dper\GL21813-PA | 188 | GL21813-PA | 9..143 | 5..141 | 238 | 39.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA21008-PA | 219 | GA21008-PA | 1..219 | 1..224 | 947 | 90.6 | Plus |
Dpse\GA13073-PA | 200 | GA13073-PA | 5..200 | 3..224 | 407 | 42.3 | Plus |
Dpse\GA20996-PA | 214 | GA20996-PA | 6..214 | 2..224 | 358 | 39.4 | Plus |
Dpse\GA21018-PA | 206 | GA21018-PA | 6..134 | 4..139 | 302 | 49.6 | Plus |
Dpse\GA20991-PA | 188 | GA20991-PA | 9..143 | 5..141 | 238 | 39.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM10297-PA | 221 | GM10297-PA | 1..221 | 1..224 | 1153 | 98.7 | Plus |
Dsec\GM10206-PA | 195 | GM10206-PA | 5..195 | 3..224 | 438 | 45 | Plus |
Dsec\GM10294-PA | 205 | GM10294-PA | 8..205 | 4..224 | 361 | 40.9 | Plus |
Dsec\GM10299-PA | 186 | GM10299-PA | 6..131 | 4..145 | 321 | 50.3 | Plus |
Dsec\GM10293-PA | 173 | GM10293-PA | 9..134 | 5..138 | 256 | 43 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\HLHm3-PA | 224 | GD21261-PA | 1..224 | 1..224 | 1180 | 100 | Plus |
Dsim\HLHmbeta-PA | 195 | GD18157-PA | 5..195 | 3..224 | 407 | 44.4 | Plus |
Dsim\HLHmgamma-PA | 205 | GD21258-PA | 8..205 | 4..224 | 361 | 40.9 | Plus |
Dsim\HLHm7-PA | 186 | GD21263-PA | 6..131 | 4..145 | 319 | 50.3 | Plus |
Dsim\HLHmdelta-PA | 173 | GD21257-PA | 9..134 | 5..138 | 256 | 43 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ23906-PA | 220 | GJ23906-PA | 1..220 | 1..224 | 814 | 84.1 | Plus |
Dvir\GJ23323-PA | 209 | GJ23323-PA | 5..209 | 3..224 | 410 | 42.1 | Plus |
Dvir\GJ23903-PA | 217 | GJ23903-PA | 6..217 | 2..224 | 383 | 42.6 | Plus |
Dvir\GJ23909-PA | 197 | GJ23909-PA | 6..197 | 4..224 | 343 | 38.7 | Plus |
Dvir\GJ23902-PA | 188 | GJ23902-PA | 9..149 | 5..142 | 267 | 42.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK14458-PA | 223 | GK14458-PA | 1..223 | 1..224 | 883 | 87.1 | Plus |
Dwil\GK12809-PA | 201 | GK12809-PA | 5..201 | 3..224 | 385 | 41.7 | Plus |
Dwil\GK14455-PA | 209 | GK14455-PA | 8..209 | 4..224 | 369 | 39.6 | Plus |
Dwil\GK14459-PA | 200 | GK14459-PA | 6..165 | 4..172 | 343 | 48.3 | Plus |
Dwil\GK14454-PA | 184 | GK14454-PA | 9..146 | 5..141 | 263 | 40.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE23647-PA | 224 | GE23647-PA | 1..224 | 1..224 | 1162 | 98.7 | Plus |
Dyak\HLHmbeta-PA | 195 | GE10652-PA | 5..195 | 3..224 | 437 | 44.6 | Plus |
Dyak\HLHmgamma-PA | 205 | GE23644-PA | 8..205 | 4..224 | 363 | 40.9 | Plus |
Dyak\HLHm7-PA | 186 | GE23649-PA | 6..131 | 4..145 | 320 | 50.3 | Plus |
Dyak\HLHmdelta-PA | 173 | GE23643-PA | 9..134 | 5..138 | 255 | 43 | Plus |