BDGP Sequence Production Resources |
Search the DGRC for RE19263
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 192 |
Well: | 63 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG11396-RA |
Protein status: | RE19263.pep: gold |
Preliminary Size: | 1461 |
Sequenced Size: | 1614 |
Gene | Date | Evidence |
---|---|---|
CG11396 | 2002-01-01 | Sim4 clustering to Release 2 |
CG11396 | 2002-02-22 | Blastp of sequenced clone |
CG11396 | 2003-01-01 | Sim4 clustering to Release 3 |
CG11396 | 2008-04-29 | Release 5.5 accounting |
CG11396 | 2008-08-15 | Release 5.9 accounting |
CG11396 | 2008-12-18 | 5.12 accounting |
1614 bp (1614 high quality bases) assembled on 2002-02-22
GenBank Submission: AY089596
> RE19263.complete GAAAGCCTATCGAAAAACCATCAAAGAAAGACATGTCACACAAAATAAGC GAATATTTCGCAAATGATCCGCCCAGTTTCTTCGATGAGCTGGCCAGCAA ACCCAAGGGCAACAACTTGTCAACAGAAGGGAGTTCCAGCAGCGCCAGTA GCACCAGTTCCGCCCCAAACATGATGTCCAACACCTTCGTCGGGTTCTTC CAACCTCCTGAATATGTTGAGACACCTGAGGCAGGAGAGGATTCTATAAA AGTCGGTGACGACGTAAGAAATCTGTGGGAGTTGCCGCGGGAAAACGAGC CCGGTAAACTTATTATGCCGGGCATCCATCTGCAAACTGACTTGGCAGAT CCCATCAGCGTGGCGGTGACTCAACACCTCGGAGAGGCCGAGTTGTCCTA CCGCAAGATCCTTCGCGTCGATGATGTCACCCAGGACGAGCGCGGCTTGA GAACACTAATCCACGCCGGTTGCTATCGCACTGCCGTGAATCTTACGGGC CGTCTTCTGACCATTTACGGTCAGGGTTACGGGCGATCTGGTCAGCCAGC AAAGCATTCGCCCCACTCCCTGCAACTGTGGTTCACGCGCCTCGCGCTGC TTGCCAAGTTGGGCGAGTTTGAGCTGCTGAATGCCGAGGCAGAACCTTTT GGCCAACTTACCAGCCCCGATGTCTTCTACGACTTCTATCCGGAGATGTA CAACGGGAAAAGTGGATCCATAGCCTGTTTTTCCTTCCGGCTCTTGCTTG CAGAGCTGCCCATATATCTGGGTAAACCCCATGTCGCCCTGGACAGACTT TCAGAACTTCATGTGACCACGCGGGAAATCAAGGAGCACTATTTAAGTCT GCACAACAAGGCGGCAGAGGAGTTTTGGCAAAGGCGATGCGAACGGGTTT TGCATTCAATCATCAACTGTGGATTGATGATGAAGAAATTCAGTATGATA GACGACATAATGGAGGGAACGCTTTTAAAGCGCTCCAACCTGAGCAAGGA GGATCGGCGATCCTTGTACTCCGCTTGGGGCCGCATTTATCTGCAAATTG GTGACATATTTGGAGCGGAGCAGAAGATTGCCGTCTCGAGGAGATTAAGG GAGATAAACTCCGCGCCTGATCTCAGAGACTTGGTCGATAAGGGATTAAT AGCTGTGGCCAAGAACGACTTTCCCGAGGCCTATGTGATATTCCAGAAAG CTCTGCACCTGGACACCGGCAACACAATGATCCTGAACAACATGGGAGTG TGCCTTCTCTACGCCGGAAAGCTAAAGGATGCTATAAATCTGTACGAGCG CGCTATCAACCTGAATCCCCAGAAGTCCCTCAACGAGAGTTTGCTGGTCA ATCTCTCGACGCTGTATGAACTGGAATCAAACAACTCCAAGGCGAAAAAG TACAACTTACTGCGCCTAATTAACAGATACAAACCGGATCTCAACATAAG CATAGAAATTTGTCTAAAATTGCAGACGATAAATTAAAGTAGAGATATTG TTAGACATTCCAAGCAAGCGGAACTTTCGGTCAAAATAGGTGAGCCCTTC TTTGAGTCCACTAGAAAAGTATTAGAGAAATAAAATAATGTTATAGACAA AAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG11396-RA | 1747 | CG11396-RA | 77..1673 | 1..1597 | 7985 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 20776148..20776733 | 929..344 | 2930 | 100 | Minus |
chr3L | 24539361 | chr3L | 20775360..20775851 | 1597..1106 | 2460 | 100 | Minus |
chr3L | 24539361 | chr3L | 20776809..20777153 | 345..1 | 1725 | 100 | Minus |
chr3L | 24539361 | chr3L | 20775908..20776084 | 1105..929 | 885 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 20787129..20787714 | 929..344 | 2930 | 100 | Minus |
3L | 28110227 | 3L | 20786341..20786832 | 1597..1106 | 2460 | 100 | Minus |
3L | 28110227 | 3L | 20787790..20788134 | 345..1 | 1725 | 100 | Minus |
3L | 28110227 | 3L | 20786889..20787065 | 1105..929 | 885 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 20780229..20780814 | 929..344 | 2930 | 100 | Minus |
3L | 28103327 | 3L | 20779441..20779932 | 1597..1106 | 2460 | 100 | Minus |
3L | 28103327 | 3L | 20780890..20781234 | 345..1 | 1725 | 100 | Minus |
3L | 28103327 | 3L | 20779989..20780165 | 1105..929 | 885 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 20775908..20776083 | 930..1105 | 100 | <- | Minus |
chr3L | 20775359..20775851 | 1106..1598 | 99 | <- | Minus |
chr3L | 20776148..20776732 | 345..929 | 100 | <- | Minus |
chr3L | 20776810..20777153 | 1..344 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11396-RA | 1..1455 | 33..1487 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11396-RA | 1..1455 | 33..1487 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11396-RA | 1..1455 | 33..1487 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11396-RA | 1..1455 | 33..1487 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11396-RA | 1..1455 | 33..1487 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11396-RA | 1..1597 | 1..1598 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11396-RA | 1..1597 | 1..1598 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11396-RA | 4..1600 | 1..1598 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11396-RA | 1..1597 | 1..1598 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11396-RA | 4..1600 | 1..1598 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 20786340..20786832 | 1106..1598 | 99 | <- | Minus |
3L | 20786889..20787064 | 930..1105 | 100 | <- | Minus |
3L | 20787129..20787713 | 345..929 | 100 | <- | Minus |
3L | 20787791..20788134 | 1..344 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 20786340..20786832 | 1106..1598 | 99 | <- | Minus |
3L | 20786889..20787064 | 930..1105 | 100 | <- | Minus |
3L | 20787129..20787713 | 345..929 | 100 | <- | Minus |
3L | 20787791..20788134 | 1..344 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 20786340..20786832 | 1106..1598 | 99 | <- | Minus |
3L | 20786889..20787064 | 930..1105 | 100 | <- | Minus |
3L | 20787129..20787713 | 345..929 | 100 | <- | Minus |
3L | 20787791..20788134 | 1..344 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 20779989..20780164 | 930..1105 | 100 | <- | Minus |
arm_3L | 20779440..20779932 | 1106..1598 | 99 | <- | Minus |
arm_3L | 20780229..20780813 | 345..929 | 100 | <- | Minus |
arm_3L | 20780891..20781234 | 1..344 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 20779440..20779932 | 1106..1598 | 99 | <- | Minus |
3L | 20779989..20780164 | 930..1105 | 100 | <- | Minus |
3L | 20780229..20780813 | 345..929 | 100 | <- | Minus |
3L | 20780891..20781234 | 1..344 | 100 | Minus |
Translation from 2 to 1486
> RE19263.hyp KPIEKPSKKDMSHKISEYFANDPPSFFDELASKPKGNNLSTEGSSSSASS TSSAPNMMSNTFVGFFQPPEYVETPEAGEDSIKVGDDVRNLWELPRENEP GKLIMPGIHLQTDLADPISVAVTQHLGEAELSYRKILRVDDVTQDERGLR TLIHAGCYRTAVNLTGRLLTIYGQGYGRSGQPAKHSPHSLQLWFTRLALL AKLGEFELLNAEAEPFGQLTSPDVFYDFYPEMYNGKSGSIACFSFRLLLA ELPIYLGKPHVALDRLSELHVTTREIKEHYLSLHNKAAEEFWQRRCERVL HSIINCGLMMKKFSMIDDIMEGTLLKRSNLSKEDRRSLYSAWGRIYLQIG DIFGAEQKIAVSRRLREINSAPDLRDLVDKGLIAVAKNDFPEAYVIFQKA LHLDTGNTMILNNMGVCLLYAGKLKDAINLYERAINLNPQKSLNESLLVN LSTLYELESNNSKAKKYNLLRLINRYKPDLNISIEICLKLQTIN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG11396-PA | 484 | CG11396-PA | 1..484 | 11..494 | 2500 | 100 | Plus |
Translation from 32 to 1486
> RE19263.pep MSHKISEYFANDPPSFFDELASKPKGNNLSTEGSSSSASSTSSAPNMMSN TFVGFFQPPEYVETPEAGEDSIKVGDDVRNLWELPRENEPGKLIMPGIHL QTDLADPISVAVTQHLGEAELSYRKILRVDDVTQDERGLRTLIHAGCYRT AVNLTGRLLTIYGQGYGRSGQPAKHSPHSLQLWFTRLALLAKLGEFELLN AEAEPFGQLTSPDVFYDFYPEMYNGKSGSIACFSFRLLLAELPIYLGKPH VALDRLSELHVTTREIKEHYLSLHNKAAEEFWQRRCERVLHSIINCGLMM KKFSMIDDIMEGTLLKRSNLSKEDRRSLYSAWGRIYLQIGDIFGAEQKIA VSRRLREINSAPDLRDLVDKGLIAVAKNDFPEAYVIFQKALHLDTGNTMI LNNMGVCLLYAGKLKDAINLYERAINLNPQKSLNESLLVNLSTLYELESN NSKAKKYNLLRLINRYKPDLNISIEICLKLQTIN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF24112-PA | 357 | GF24112-PA | 9..357 | 5..351 | 1564 | 84.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG13284-PA | 484 | GG13284-PA | 1..484 | 1..484 | 2434 | 96.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH16975-PA | 487 | GH16975-PA | 8..487 | 4..484 | 1978 | 79.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG11396-PA | 484 | CG11396-PA | 1..484 | 1..484 | 2500 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI11888-PA | 488 | GI11888-PA | 8..488 | 4..484 | 2043 | 79.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL12752-PA | 480 | GL12752-PA | 1..480 | 1..484 | 2188 | 84.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA10973-PA | 484 | GA10973-PA | 1..484 | 1..484 | 2229 | 85.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM22187-PA | 484 | GM22187-PA | 1..484 | 1..484 | 2552 | 98.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD12162-PA | 582 | GD12162-PA | 1..456 | 1..456 | 2388 | 97.1 | Plus |
Dsim\GD12162-PA | 582 | GD12162-PA | 457..582 | 359..484 | 646 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ13767-PA | 487 | GJ13767-PA | 8..487 | 4..484 | 2020 | 78.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK12366-PA | 477 | GK12366-PA | 4..477 | 5..484 | 1953 | 77 | Plus |