Clone RE19263 Report

Search the DGRC for RE19263

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:192
Well:63
Vector:pFlc-1
Associated Gene/TranscriptCG11396-RA
Protein status:RE19263.pep: gold
Preliminary Size:1461
Sequenced Size:1614

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11396 2002-01-01 Sim4 clustering to Release 2
CG11396 2002-02-22 Blastp of sequenced clone
CG11396 2003-01-01 Sim4 clustering to Release 3
CG11396 2008-04-29 Release 5.5 accounting
CG11396 2008-08-15 Release 5.9 accounting
CG11396 2008-12-18 5.12 accounting

Clone Sequence Records

RE19263.complete Sequence

1614 bp (1614 high quality bases) assembled on 2002-02-22

GenBank Submission: AY089596

> RE19263.complete
GAAAGCCTATCGAAAAACCATCAAAGAAAGACATGTCACACAAAATAAGC
GAATATTTCGCAAATGATCCGCCCAGTTTCTTCGATGAGCTGGCCAGCAA
ACCCAAGGGCAACAACTTGTCAACAGAAGGGAGTTCCAGCAGCGCCAGTA
GCACCAGTTCCGCCCCAAACATGATGTCCAACACCTTCGTCGGGTTCTTC
CAACCTCCTGAATATGTTGAGACACCTGAGGCAGGAGAGGATTCTATAAA
AGTCGGTGACGACGTAAGAAATCTGTGGGAGTTGCCGCGGGAAAACGAGC
CCGGTAAACTTATTATGCCGGGCATCCATCTGCAAACTGACTTGGCAGAT
CCCATCAGCGTGGCGGTGACTCAACACCTCGGAGAGGCCGAGTTGTCCTA
CCGCAAGATCCTTCGCGTCGATGATGTCACCCAGGACGAGCGCGGCTTGA
GAACACTAATCCACGCCGGTTGCTATCGCACTGCCGTGAATCTTACGGGC
CGTCTTCTGACCATTTACGGTCAGGGTTACGGGCGATCTGGTCAGCCAGC
AAAGCATTCGCCCCACTCCCTGCAACTGTGGTTCACGCGCCTCGCGCTGC
TTGCCAAGTTGGGCGAGTTTGAGCTGCTGAATGCCGAGGCAGAACCTTTT
GGCCAACTTACCAGCCCCGATGTCTTCTACGACTTCTATCCGGAGATGTA
CAACGGGAAAAGTGGATCCATAGCCTGTTTTTCCTTCCGGCTCTTGCTTG
CAGAGCTGCCCATATATCTGGGTAAACCCCATGTCGCCCTGGACAGACTT
TCAGAACTTCATGTGACCACGCGGGAAATCAAGGAGCACTATTTAAGTCT
GCACAACAAGGCGGCAGAGGAGTTTTGGCAAAGGCGATGCGAACGGGTTT
TGCATTCAATCATCAACTGTGGATTGATGATGAAGAAATTCAGTATGATA
GACGACATAATGGAGGGAACGCTTTTAAAGCGCTCCAACCTGAGCAAGGA
GGATCGGCGATCCTTGTACTCCGCTTGGGGCCGCATTTATCTGCAAATTG
GTGACATATTTGGAGCGGAGCAGAAGATTGCCGTCTCGAGGAGATTAAGG
GAGATAAACTCCGCGCCTGATCTCAGAGACTTGGTCGATAAGGGATTAAT
AGCTGTGGCCAAGAACGACTTTCCCGAGGCCTATGTGATATTCCAGAAAG
CTCTGCACCTGGACACCGGCAACACAATGATCCTGAACAACATGGGAGTG
TGCCTTCTCTACGCCGGAAAGCTAAAGGATGCTATAAATCTGTACGAGCG
CGCTATCAACCTGAATCCCCAGAAGTCCCTCAACGAGAGTTTGCTGGTCA
ATCTCTCGACGCTGTATGAACTGGAATCAAACAACTCCAAGGCGAAAAAG
TACAACTTACTGCGCCTAATTAACAGATACAAACCGGATCTCAACATAAG
CATAGAAATTTGTCTAAAATTGCAGACGATAAATTAAAGTAGAGATATTG
TTAGACATTCCAAGCAAGCGGAACTTTCGGTCAAAATAGGTGAGCCCTTC
TTTGAGTCCACTAGAAAAGTATTAGAGAAATAAAATAATGTTATAGACAA
AAAAAAAAAAAAAA

RE19263.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:26:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG11396-RA 1747 CG11396-RA 77..1673 1..1597 7985 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:25:25
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 20776148..20776733 929..344 2930 100 Minus
chr3L 24539361 chr3L 20775360..20775851 1597..1106 2460 100 Minus
chr3L 24539361 chr3L 20776809..20777153 345..1 1725 100 Minus
chr3L 24539361 chr3L 20775908..20776084 1105..929 885 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:40:00 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:25:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20787129..20787714 929..344 2930 100 Minus
3L 28110227 3L 20786341..20786832 1597..1106 2460 100 Minus
3L 28110227 3L 20787790..20788134 345..1 1725 100 Minus
3L 28110227 3L 20786889..20787065 1105..929 885 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:55:10
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 20780229..20780814 929..344 2930 100 Minus
3L 28103327 3L 20779441..20779932 1597..1106 2460 100 Minus
3L 28103327 3L 20780890..20781234 345..1 1725 100 Minus
3L 28103327 3L 20779989..20780165 1105..929 885 100 Minus
Blast to na_te.dros performed on 2019-03-16 19:25:24 has no hits.

RE19263.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:26:12 Download gff for RE19263.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 20775908..20776083 930..1105 100 <- Minus
chr3L 20775359..20775851 1106..1598 99 <- Minus
chr3L 20776148..20776732 345..929 100 <- Minus
chr3L 20776810..20777153 1..344 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:00:09 Download gff for RE19263.complete
Subject Subject Range Query Range Percent Splice Strand
CG11396-RA 1..1455 33..1487 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:40:04 Download gff for RE19263.complete
Subject Subject Range Query Range Percent Splice Strand
CG11396-RA 1..1455 33..1487 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:39:40 Download gff for RE19263.complete
Subject Subject Range Query Range Percent Splice Strand
CG11396-RA 1..1455 33..1487 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:09:48 Download gff for RE19263.complete
Subject Subject Range Query Range Percent Splice Strand
CG11396-RA 1..1455 33..1487 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:31:12 Download gff for RE19263.complete
Subject Subject Range Query Range Percent Splice Strand
CG11396-RA 1..1455 33..1487 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:05:01 Download gff for RE19263.complete
Subject Subject Range Query Range Percent Splice Strand
CG11396-RA 1..1597 1..1598 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:40:04 Download gff for RE19263.complete
Subject Subject Range Query Range Percent Splice Strand
CG11396-RA 1..1597 1..1598 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:39:40 Download gff for RE19263.complete
Subject Subject Range Query Range Percent Splice Strand
CG11396-RA 4..1600 1..1598 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:09:48 Download gff for RE19263.complete
Subject Subject Range Query Range Percent Splice Strand
CG11396-RA 1..1597 1..1598 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:31:12 Download gff for RE19263.complete
Subject Subject Range Query Range Percent Splice Strand
CG11396-RA 4..1600 1..1598 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:26:12 Download gff for RE19263.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20786340..20786832 1106..1598 99 <- Minus
3L 20786889..20787064 930..1105 100 <- Minus
3L 20787129..20787713 345..929 100 <- Minus
3L 20787791..20788134 1..344 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:26:12 Download gff for RE19263.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20786340..20786832 1106..1598 99 <- Minus
3L 20786889..20787064 930..1105 100 <- Minus
3L 20787129..20787713 345..929 100 <- Minus
3L 20787791..20788134 1..344 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:26:12 Download gff for RE19263.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20786340..20786832 1106..1598 99 <- Minus
3L 20786889..20787064 930..1105 100 <- Minus
3L 20787129..20787713 345..929 100 <- Minus
3L 20787791..20788134 1..344 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:39:40 Download gff for RE19263.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20779989..20780164 930..1105 100 <- Minus
arm_3L 20779440..20779932 1106..1598 99 <- Minus
arm_3L 20780229..20780813 345..929 100 <- Minus
arm_3L 20780891..20781234 1..344 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:44:01 Download gff for RE19263.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20779440..20779932 1106..1598 99 <- Minus
3L 20779989..20780164 930..1105 100 <- Minus
3L 20780229..20780813 345..929 100 <- Minus
3L 20780891..20781234 1..344 100   Minus

RE19263.hyp Sequence

Translation from 2 to 1486

> RE19263.hyp
KPIEKPSKKDMSHKISEYFANDPPSFFDELASKPKGNNLSTEGSSSSASS
TSSAPNMMSNTFVGFFQPPEYVETPEAGEDSIKVGDDVRNLWELPRENEP
GKLIMPGIHLQTDLADPISVAVTQHLGEAELSYRKILRVDDVTQDERGLR
TLIHAGCYRTAVNLTGRLLTIYGQGYGRSGQPAKHSPHSLQLWFTRLALL
AKLGEFELLNAEAEPFGQLTSPDVFYDFYPEMYNGKSGSIACFSFRLLLA
ELPIYLGKPHVALDRLSELHVTTREIKEHYLSLHNKAAEEFWQRRCERVL
HSIINCGLMMKKFSMIDDIMEGTLLKRSNLSKEDRRSLYSAWGRIYLQIG
DIFGAEQKIAVSRRLREINSAPDLRDLVDKGLIAVAKNDFPEAYVIFQKA
LHLDTGNTMILNNMGVCLLYAGKLKDAINLYERAINLNPQKSLNESLLVN
LSTLYELESNNSKAKKYNLLRLINRYKPDLNISIEICLKLQTIN*

RE19263.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:06:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG11396-PA 484 CG11396-PA 1..484 11..494 2500 100 Plus

RE19263.pep Sequence

Translation from 32 to 1486

> RE19263.pep
MSHKISEYFANDPPSFFDELASKPKGNNLSTEGSSSSASSTSSAPNMMSN
TFVGFFQPPEYVETPEAGEDSIKVGDDVRNLWELPRENEPGKLIMPGIHL
QTDLADPISVAVTQHLGEAELSYRKILRVDDVTQDERGLRTLIHAGCYRT
AVNLTGRLLTIYGQGYGRSGQPAKHSPHSLQLWFTRLALLAKLGEFELLN
AEAEPFGQLTSPDVFYDFYPEMYNGKSGSIACFSFRLLLAELPIYLGKPH
VALDRLSELHVTTREIKEHYLSLHNKAAEEFWQRRCERVLHSIINCGLMM
KKFSMIDDIMEGTLLKRSNLSKEDRRSLYSAWGRIYLQIGDIFGAEQKIA
VSRRLREINSAPDLRDLVDKGLIAVAKNDFPEAYVIFQKALHLDTGNTMI
LNNMGVCLLYAGKLKDAINLYERAINLNPQKSLNESLLVNLSTLYELESN
NSKAKKYNLLRLINRYKPDLNISIEICLKLQTIN*

RE19263.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:21:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24112-PA 357 GF24112-PA 9..357 5..351 1564 84.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:21:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13284-PA 484 GG13284-PA 1..484 1..484 2434 96.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 00:21:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16975-PA 487 GH16975-PA 8..487 4..484 1978 79.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:28:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG11396-PA 484 CG11396-PA 1..484 1..484 2500 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:21:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11888-PA 488 GI11888-PA 8..488 4..484 2043 79.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:21:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12752-PA 480 GL12752-PA 1..480 1..484 2188 84.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:21:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10973-PA 484 GA10973-PA 1..484 1..484 2229 85.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:21:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22187-PA 484 GM22187-PA 1..484 1..484 2552 98.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:21:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12162-PA 582 GD12162-PA 1..456 1..456 2388 97.1 Plus
Dsim\GD12162-PA 582 GD12162-PA 457..582 359..484 646 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:21:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13767-PA 487 GJ13767-PA 8..487 4..484 2020 78.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:21:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12366-PA 477 GK12366-PA 4..477 5..484 1953 77 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:21:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22382-PA 484 GE22382-PA 1..484 1..484 2428 95.2 Plus
Dyak\GE22733-PA 198 GE22733-PA 1..177 1..177 826 91 Plus