Clone RE19335 Report

Search the DGRC for RE19335

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:193
Well:35
Vector:pFlc-1
Associated Gene/TranscriptCG17493-RB
Protein status:RE19335.pep: gold
Preliminary Size:1248
Sequenced Size:1506

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17493 2002-01-01 Sim4 clustering to Release 2
CG40016 2002-02-22 Blastp of sequenced clone
CG17493 2003-01-01 Sim4 clustering to Release 3
CG17493 2008-04-29 Release 5.5 accounting
CG17493 2008-08-15 Release 5.9 accounting
CG17493 2008-12-18 5.12 accounting

Clone Sequence Records

RE19335.complete Sequence

1506 bp (1506 high quality bases) assembled on 2002-02-22

GenBank Submission: AY089597

> RE19335.complete
GTTCTTCTAGTGTCTTTGCTAGTACGATAGATTGCTGGTTCATAATTGTA
CTCAATTTTAAGTGTCTTTACTGCTTTTACTTTGCTTTTGTGCAAATATA
TGTGTAGATGTTTCACAAGTGTGAACAGGCCTTAAACATTGTGTTTTTCT
GGCATTCTAGTCGGCTTTATTTGAGCTGTTTCACAAACGAAAGATATGGC
TTTCTTGTAATCGTGAACCGTAAACTTGTGTGTTGCGCTAGGAATAGGGT
GGGCTGTGTAGAGCTCTTCATGTTTATATATATTATAACAAAAATAGGAG
CATCCGACAAATCAACCCTCACTCGTATAGTCTATGCGACGTATATCAAG
AACTTATACCAACATCTGAAATTACCCAATCGATTAATGGAGCAAAACTC
AACTGCGGCTGGCAACGCCAACCCTGCTACAGTTCCTGCCAAAAGGGGTA
CGCAACAAGGTCGCAAGAAGTCTGGCCCCAAGTTCGAACTGTCTGAGGCC
CAAAAATGCGACATTAAGGAGGCCTTTGATCTATTTGACAACGAAGGCAC
GGGTTACATTGAGGTAAAGGAACTTAAGGTGGCCATTAGGGCTCTGGGAT
TCGAGCCAAAAAAGGAGGAGATTAAGAGGATGATTTCCGACATTGACAAG
GACTGCAGTGGGCGCATTGCGTTTAACGTCTTTCTGCAACTGATGACTAT
AAAGATGGCCGAAAAGGACACTAAGGAAGAGATTCTTAAGGCTTTTCGGC
TTTTTGATGATGATGACACTGGAAAAATTTCATTCAGAAATCTAAAGAGG
GTGGCTCGTGAACTTGGTGAAACACTTACTGACGAGGAACTGCGAGAGAT
GATAGACGAAGCCGATTTGGACAATGACGGGGAGGTAAATCAAGAAGAAT
TTCTGCGAATCATGAAGAAGACTAGTTTGTATTAAAGAGCAGCGCTTAAT
CTTCATTTTAAAACACTTCGTGCGTTCCTGGTGCACTTAATGAAACATTC
TCAAAATAATTTGCCGTTTTAAGTCATCAATTATAAATGTAAGTTTTAGA
TATTTTAAAGTTTTACGTATGAGTATTACATCAAGAAATAATTGTTCAGC
TCGTTTTGAATTTTAAACAAAAATACTTTTTCCCGATTTGCGATAAAAGG
GCGTAGTAACATCAACTGCAAACATTTATAATATCAAATTTCATGATGGT
GAATAGTAAAATTTAAAACAAAATGTAAGGGAACTAATTATTGGTATATG
TTACTTGAATTAGGTCACAACGCTACTTTTTACAGCTTATTGTCTAAATC
TAAGCAAGGTAAATAAATTCATACAATTTTTAGATAAGAAGGTACAATAT
CACATCGTCCACAAGTAAATTGCAATGCTTATATCAGAAATGTTACAATG
CCTTGCTAGTGTTTATATATTAGTTGAGCATACTATTTAAAAACTAGAAC
CAAATTTTTATTTTTAATTAAACAATGAAGCTAAAAAAATAAAAAAAAAA
AAAAAA

RE19335.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:26:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG17493-RA 1697 CG17493-RA 50..1541 1..1492 7445 99.9 Plus
CG17493.b 2211 CG17493.b 50..1541 1..1492 7445 99.9 Plus
CG17493.a 2004 CG17493.a 50..1541 1..1492 7445 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:11:33
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 22441788..22442902 376..1490 5575 100 Plus
chr2L 23010047 chr2L 22441354..22441728 1..375 1845 99.5 Plus
chr2L 23010047 chr2L 18207469..18207683 724..510 190 72.6 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:40:03 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:11:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 22550548..22551664 376..1492 5585 100 Plus
2L 23513712 2L 22550114..22550488 1..375 1860 99.7 Plus
2L 23513712 2L 18208799..18209013 724..510 190 72.6 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:55:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 22550548..22551664 376..1492 5585 100 Plus
2L 23513712 2L 22550114..22550488 1..375 1860 99.7 Plus
Blast to na_te.dros performed 2019-03-15 20:11:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\HeT-A 5691 Dyak\HeT-A YAKHETA 5691bp 28..99 116..44 119 64.4 Minus

RE19335.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:12:33 Download gff for RE19335.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 22441372..22441728 19..375 99 -> Plus
chr2L 22441788..22442902 376..1490 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:00:11 Download gff for RE19335.complete
Subject Subject Range Query Range Percent Splice Strand
CG17493-RA 1..828 108..935 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:39:43 Download gff for RE19335.complete
Subject Subject Range Query Range Percent Splice Strand
CG17493-RA 1..828 108..935 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:08:12 Download gff for RE19335.complete
Subject Subject Range Query Range Percent Splice Strand
CG17493-RB 1..549 387..935 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:09:35 Download gff for RE19335.complete
Subject Subject Range Query Range Percent Splice Strand
CG17493-RA 1..828 108..935 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:17:36 Download gff for RE19335.complete
Subject Subject Range Query Range Percent Splice Strand
CG17493-RB 1..549 387..935 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:04:44 Download gff for RE19335.complete
Subject Subject Range Query Range Percent Splice Strand
CG17493-RA 1..1490 1..1490 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:39:43 Download gff for RE19335.complete
Subject Subject Range Query Range Percent Splice Strand
CG17493-RA 1..1490 1..1490 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:08:12 Download gff for RE19335.complete
Subject Subject Range Query Range Percent Splice Strand
CG17493-RB 51..1540 1..1490 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:09:35 Download gff for RE19335.complete
Subject Subject Range Query Range Percent Splice Strand
CG17493-RA 1..1490 1..1490 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:17:36 Download gff for RE19335.complete
Subject Subject Range Query Range Percent Splice Strand
CG17493-RB 51..1540 1..1490 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:12:33 Download gff for RE19335.complete
Subject Subject Range Query Range Percent Splice Strand
2L 22550114..22550488 1..375 99 -> Plus
2L 22550548..22551662 376..1490 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:12:33 Download gff for RE19335.complete
Subject Subject Range Query Range Percent Splice Strand
2L 22550114..22550488 1..375 99 -> Plus
2L 22550548..22551662 376..1490 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:12:33 Download gff for RE19335.complete
Subject Subject Range Query Range Percent Splice Strand
2L 22550114..22550488 1..375 99 -> Plus
2L 22550548..22551662 376..1490 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:08:12 Download gff for RE19335.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 22442846..22443220 1..375 99 -> Plus
arm_2L 22443280..22444394 376..1490 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:43:48 Download gff for RE19335.complete
Subject Subject Range Query Range Percent Splice Strand
2L 22550114..22550488 1..375 99 -> Plus
2L 22550548..22551662 376..1490 100   Plus

RE19335.pep Sequence

Translation from 107 to 934

> RE19335.pep
MFHKCEQALNIVFFWHSSRLYLSCFTNERYGFLVIVNRKLVCCARNRVGC
VELFMFIYIITKIGASDKSTLTRIVYATYIKNLYQHLKLPNRLMEQNSTA
AGNANPATVPAKRGTQQGRKKSGPKFELSEAQKCDIKEAFDLFDNEGTGY
IEVKELKVAIRALGFEPKKEEIKRMISDIDKDCSGRIAFNVFLQLMTIKM
AEKDTKEEILKAFRLFDDDDTGKISFRNLKRVARELGETLTDEELREMID
EADLDNDGEVNQEEFLRIMKKTSLY*

RE19335.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:19:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22746-PA 184 GF22746-PA 1..184 94..275 779 83.7 Plus
Dana\GF19690-PA 101 GF19690-PA 1..100 175..274 358 72 Plus
Dana\GF12835-PA 149 GF12835-PA 4..146 127..269 338 49.7 Plus
Dana\GF16772-PA 148 GF16772-PA 3..147 127..271 310 46.9 Plus
Dana\GF13647-PA 148 GF13647-PA 3..145 127..269 253 39.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:19:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21382-PA 182 GG21382-PA 1..182 94..275 921 97.8 Plus
Dere\GG21714-PA 186 GG21714-PA 35..185 124..274 547 69.5 Plus
Dere\GG20265-PA 149 GG20265-PA 4..146 127..269 338 49.7 Plus
Dere\GG11425-PA 148 GG11425-PA 3..147 127..271 292 44.1 Plus
Dere\GG23316-PA 148 GG23316-PA 3..145 127..269 245 38.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 00:19:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10976-PA 190 GH10976-PA 1..190 94..275 807 85.8 Plus
Dgri\GH23794-PA 186 GH23794-PA 1..185 94..274 560 63.2 Plus
Dgri\GH10538-PA 186 GH10538-PA 1..185 94..274 560 63.2 Plus
Dgri\GH23405-PA 151 GH23405-PA 5..150 126..271 276 41.8 Plus
Dgri\GH13759-PA 147 GH13759-PA 12..144 137..269 221 35.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:40:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG17493-PD 182 CG17493-PD 1..182 94..275 921 100 Plus
CG17493-PC 182 CG17493-PC 1..182 94..275 921 100 Plus
CG17493-PB 182 CG17493-PB 1..182 94..275 921 100 Plus
CG31802-PA 186 CG31802-PA 5..185 92..274 547 60.7 Plus
Cam-PD 149 CG8472-PD 4..146 127..269 346 49.7 Plus
Cam-PC 149 CG8472-PC 4..146 127..269 346 49.7 Plus
Cam-PE 149 CG8472-PE 4..146 127..269 346 49.7 Plus
Cam-PB 149 CG8472-PB 4..146 127..269 346 49.7 Plus
Cam-PA 149 CG8472-PA 4..146 127..269 346 49.7 Plus
Acam-PB 148 CG17769-PB 3..142 127..266 297 44.3 Plus
Acam-PA 148 CG17769-PA 3..142 127..266 297 44.3 Plus
CG31960-PA 148 CG31960-PA 3..145 127..269 279 42 Plus
azot-PA 148 CG11165-PA 3..145 127..269 268 38.5 Plus
CG17770-PA 164 CG17770-PA 20..164 128..272 249 34.5 Plus
CG30378-PA 148 CG30378-PA 5..147 128..270 238 32.2 Plus
CG11638-PA 387 CG11638-PA 206..355 128..269 231 33.1 Plus
Mlc-c-PA 147 CG3201-PA 5..144 129..269 229 35.7 Plus
TpnC73F-PC 155 CG7930-PC 7..152 127..269 223 34.2 Plus
TpnC73F-PA 155 CG7930-PA 7..152 127..269 223 34.2 Plus
Mlc-c-PB 153 CG3201-PB 17..150 135..269 222 35.8 Plus
CG5024-PB 165 CG5024-PB 21..165 128..272 221 30.3 Plus
CG5024-PA 165 CG5024-PA 21..165 128..272 221 30.3 Plus
TpnC41C-PB 154 CG2981-PB 4..149 127..269 219 33.6 Plus
TpnC41C-PA 154 CG2981-PA 4..149 127..269 219 33.6 Plus
TpnC47D-PB 155 CG9073-PB 7..152 127..269 219 33.6 Plus
TpnC47D-PA 155 CG9073-PA 7..152 127..269 219 33.6 Plus
CG13898-PA 151 CG13898-PA 15..145 135..265 204 35.1 Plus
TpnC25D-PC 149 CG6514-PC 1..146 128..269 202 30.8 Plus
TpnC25D-PA 149 CG6514-PA 1..146 128..269 202 30.8 Plus
TpnC25D-PB 143 CG6514-PB 4..140 136..269 197 30.7 Plus
CG13526-PA 154 CG13526-PA 8..150 127..269 193 23.1 Plus
TpnC4-PB 153 CG12408-PB 5..151 127..269 192 28.6 Plus
TpnC4-PA 153 CG12408-PA 5..151 127..269 192 28.6 Plus
Eip63F-1-PC 181 CG15855-PC 9..180 112..269 192 30.5 Plus
Eip63F-1-PA 193 CG15855-PA 21..192 112..269 192 30.5 Plus
Eip63F-1-PD 166 CG15855-PD 8..165 131..269 182 31 Plus
sqh-PE 174 CG3595-PE 30..165 130..270 176 30.5 Plus
sqh-PD 174 CG3595-PD 30..165 130..270 176 30.5 Plus
sqh-PC 174 CG3595-PC 30..165 130..270 176 30.5 Plus
sqh-PB 174 CG3595-PB 30..165 130..270 176 30.5 Plus
sqh-PA 174 CG3595-PA 30..165 130..270 176 30.5 Plus
Eip63F-1-PB 161 CG15855-PB 8..160 136..269 175 30.7 Plus
CG11041-PB 155 CG11041-PB 13..148 136..266 169 31.6 Plus
CG33098-PD 164 CG33098-PD 11..134 127..254 163 28.9 Plus
CG33098-PF 230 CG33098-PF 77..200 127..254 163 28.9 Plus
CG33098-PE 230 CG33098-PE 77..200 127..254 163 28.9 Plus
CG33098-PB 230 CG33098-PB 77..200 127..254 163 28.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:19:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17489-PA 205 GI17489-PA 41..205 111..275 760 89.1 Plus
Dmoj\GI20846-PA 184 GI20846-PA 1..183 94..274 547 63.2 Plus
Dmoj\GI20594-PA 149 GI20594-PA 4..146 127..269 338 49.7 Plus
Dmoj\GI10339-PA 149 GI10339-PA 4..148 127..271 280 42.1 Plus
Dmoj\GI10340-PA 150 GI10340-PA 5..147 127..269 258 42.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:19:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26165-PA 192 GL26165-PA 29..192 112..275 770 92.1 Plus
Dper\GL19433-PA 180 GL19433-PA 29..179 124..274 503 69.5 Plus
Dper\GL10814-PA 149 GL10814-PA 4..146 127..269 338 49.7 Plus
Dper\GL21535-PA 148 GL21535-PA 3..147 127..271 301 44.1 Plus
Dper\GL21536-PA 148 GL21536-PA 3..147 127..271 294 42.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:19:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16488-PA 180 GA16488-PA 13..179 107..274 507 64.3 Plus
Dpse\GA24499-PA 149 GA24499-PA 4..146 127..269 338 49.7 Plus
Dpse\GA14657-PA 148 GA14657-PA 3..147 127..271 301 44.1 Plus
Dpse\GA26322-PA 148 GA26322-PA 3..147 127..271 294 42.8 Plus
Dpse\GA24239-PA 149 GA24239-PA 13..149 135..271 261 42.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:19:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19287-PA 182 GM19287-PA 1..182 94..275 940 99.5 Plus
Dsec\GM17095-PA 186 GM17095-PA 5..185 92..274 553 60.7 Plus
Dsec\GM21351-PA 149 GM21351-PA 4..146 127..269 338 49.7 Plus
Dsec\GM10265-PA 148 GM10265-PA 3..147 127..271 281 42.8 Plus
Dsec\GM20994-PA 148 GM20994-PA 3..145 127..269 249 37.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:19:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17706-PA 122 GD17706-PA 1..122 94..216 596 94.3 Plus
Dsim\GD21839-PA 186 GD21839-PA 5..185 92..274 553 60.7 Plus
Dsim\GD10849-PA 149 GD10849-PA 4..146 127..269 338 49.7 Plus
Dsim\GD21235-PA 148 GD21235-PA 3..147 127..271 281 42.8 Plus
Dsim\GD10523-PA 148 GD10523-PA 3..145 127..269 251 37.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:19:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15110-PA 190 GJ15110-PA 27..190 112..275 778 93.3 Plus
Dvir\GJ19846-PA 184 GJ19846-PA 1..183 94..274 562 65.2 Plus
Dvir\GJ10193-PA 151 GJ10193-PA 6..150 127..271 278 41.4 Plus
Dvir\GJ20779-PA 113 GJ20779-PA 1..110 160..269 263 50 Plus
Dvir\GJ15117-PA 152 GJ15117-PA 9..151 128..270 234 37.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:19:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15343-PA 197 GK15343-PA 33..197 111..275 772 91.5 Plus
Dwil\GK19020-PA 101 GK19020-PA 1..100 175..274 367 73 Plus
Dwil\GK22183-PA 149 GK22183-PA 4..146 127..269 338 49.7 Plus
Dwil\GK18988-PA 148 GK18988-PA 3..147 127..271 303 44.1 Plus
Dwil\GK11587-PA 159 GK11587-PA 5..158 121..274 291 40.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:19:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22671-PA 182 GE22671-PA 1..182 94..275 906 96.2 Plus
Dyak\GE22672-PA 182 GE22672-PA 1..182 94..275 893 95.6 Plus
Dyak\GE15093-PA 249 GE15093-PA 91..240 72..215 604 80.7 Plus
Dyak\GE12738-PA 186 GE12738-PA 5..185 92..274 557 60.7 Plus
Dyak\Cam-PA 149 GE12425-PA 4..146 127..269 338 49.7 Plus

RE19335.hyp Sequence

Translation from 107 to 934

> RE19335.hyp
MFHKCEQALNIVFFWHSSRLYLSCFTNERYGFLVIVNRKLVCCARNRVGC
VELFMFIYIITKIGASDKSTLTRIVYATYIKNLYQHLKLPNRLMEQNSTA
AGNANPATVPAKRGTQQGRKKSGPKFELSEAQKCDIKEAFDLFDNEGTGY
IEVKELKVAIRALGFEPKKEEIKRMISDIDKDCSGRIAFNVFLQLMTIKM
AEKDTKEEILKAFRLFDDDDTGKISFRNLKRVARELGETLTDEELREMID
EADLDNDGEVNQEEFLRIMKKTSLY*

RE19335.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:54:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG17493-PD 182 CG17493-PD 1..182 94..275 921 100 Plus
CG17493-PC 182 CG17493-PC 1..182 94..275 921 100 Plus
CG17493-PB 182 CG17493-PB 1..182 94..275 921 100 Plus
CG31802-PA 186 CG31802-PA 5..185 92..274 547 60.7 Plus
Cam-PD 149 CG8472-PD 4..146 127..269 346 49.7 Plus