Clone RE19358 Report

Search the DGRC for RE19358

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:193
Well:58
Vector:pFlc-1
Associated Gene/TranscriptRipalpha-RA
Protein status:RE19358.pep: gold
Preliminary Size:803
Sequenced Size:1273

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG18145 2002-01-01 Sim4 clustering to Release 2
CG18145 2002-02-22 Blastp of sequenced clone
CG18145 2003-01-01 Sim4 clustering to Release 3
Ripalpha 2008-04-29 Release 5.5 accounting
Ripalpha 2008-08-15 Release 5.9 accounting
Ripalpha 2008-12-18 5.12 accounting

Clone Sequence Records

RE19358.complete Sequence

1273 bp (1273 high quality bases) assembled on 2002-02-22

GenBank Submission: AY089598

> RE19358.complete
ATCGAAGAAGTGCCACCACTAGCAGAGCAACAGCAAATTGCGCGGATTTT
TTTTTTTAGCAAAAAAGTTGTGTTTTTCAACTATTTCCGATTGCTAATTA
CTAGATCACTATCAATCACCAACAGCGCTATAAAATTGGAACCTTGCCTT
ATTGACGACACTGACCTACCATATCTAGTTAAAAAAAAAGATTAAAAACA
AACAAAATAACCACATATACAAATAAACCGAAATGAACTCCACTCAAAGC
CCGGTTTATCGCACCTCCGTGGAGCAAAAGCGGCATGCTCAAGAAGTGGC
CAAAAGACAGCGGATGGGCAACCAAATGCCAAGACTTCGCGAAATGCTGC
GAGAGAAATACCGCAAGCGCATCATAGAAACGCGCAATAGATGCACGGAT
GCCCAACGAGAAATCCAATTGTCCGAACTCAGGGAAATCCTGCGCCTGGA
ACTCAGTGAGCTAGAGAAGGATGTGGAGCTTGAGGAGCTGATTCTGGAGG
AGCTACTATCCGATGTCAACGAGTGGTATGCCCTGGGCGAAAAGAATCTG
GAAACGCTATACGCAGAGCCCGATGAGCAGCAAAAGGAGGTTTTATGCCC
AGTTTGTCAGATTAAAAACCTACGCCATCACAAAGGTGCCTTCATCTGCG
AGTGTGGCATCCGCTTCGAGCACTCTGCGAACATGGAACAGCTGCAGATA
CTGCTGCAACAACAAATCGCCAGCCATGAACTTCAGTGCACTCAGGCCCT
GCGATTTTTCATCGAACCCGCTTCGGGACAACTATACGACATGTGCGGCA
GCTGCGACTACTTCTCCTCCGTCTAGGTCGTTTATGGAGCTGGTTTCTAC
CGCTGACTGCTGATAGCTAGTTTAAAGGAGTTTATTAGTTATAATAAGAT
AAGTTACATAAGTTAAACTTCAGACAGTCTTATCAGTTTGGAAAACCAGA
GATCTGCACAGAAGATTTTTTAGATCCGAAGGCTTTATATGCGTATTAAA
TTTTTGAAACAGTGATACATGATATTCCCCCCCTAATTAATCTAAATCCA
AAGAATGATATGAGTTATGGCTAGAAATGAGATCTTTAAGCATATTGTTA
TAATTGCACAACAAATTAAAATTAAAATCTTAGGAATAACAGATTTATAA
AATGTATTCTAGGCTCTTACAAAATTCAAACTAAACCATTCTTCTAATGT
GGCATTCTAGATTAAGAAAATAAATCAGGTGCGAGACTAAGTTTGATTTA
TGAATACAAAAAAAAAAAAAAAA

RE19358.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:26:05
Subject Length Description Subject Range Query Range Score Percent Strand
Ripalpha-RA 1279 Ripalpha-RA 14..1274 1..1261 6290 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:27:01
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 10198286..10199121 1256..421 4180 100 Minus
chr2L 23010047 chr2L 10199300..10199553 355..102 1255 99.6 Minus
chr2L 23010047 chr2L 10199753..10199856 104..1 520 100 Minus
chr2L 23010047 chr2L 10199175..10199242 421..354 340 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:40:04 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:26:59
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10199397..10200237 1261..421 4190 99.9 Minus
2L 23513712 2L 10200416..10200669 355..102 1270 100 Minus
2L 23513712 2L 10200869..10200972 104..1 520 100 Minus
2L 23513712 2L 10200291..10200358 421..354 340 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:55:03
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10199397..10200237 1261..421 4190 99.8 Minus
2L 23513712 2L 10200416..10200669 355..102 1270 100 Minus
2L 23513712 2L 10200869..10200972 104..1 520 100 Minus
2L 23513712 2L 10200291..10200358 421..354 340 100 Minus
Blast to na_te.dros performed 2019-03-16 07:26:59
Subject Length Description Subject Range Query Range Score Percent Strand
invader3 5484 invader3 INVADER3 5484bp 5038..5085 1100..1149 110 72 Plus

RE19358.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:27:45 Download gff for RE19358.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 10198285..10199120 422..1257 99 <- Minus
chr2L 10199175..10199240 356..421 100 <- Minus
chr2L 10199300..10199550 105..355 99 <- Minus
chr2L 10199753..10199856 1..104 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:00:12 Download gff for RE19358.complete
Subject Subject Range Query Range Percent Splice Strand
Ripalpha-RA 1..594 233..826 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:39:45 Download gff for RE19358.complete
Subject Subject Range Query Range Percent Splice Strand
Ripalpha-RA 1..594 233..826 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:23:08 Download gff for RE19358.complete
Subject Subject Range Query Range Percent Splice Strand
Ripalpha-RA 1..594 233..826 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:09:36 Download gff for RE19358.complete
Subject Subject Range Query Range Percent Splice Strand
Ripalpha-RA 1..594 233..826 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:32:43 Download gff for RE19358.complete
Subject Subject Range Query Range Percent Splice Strand
Ripalpha-RA 1..594 233..826 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:04:46 Download gff for RE19358.complete
Subject Subject Range Query Range Percent Splice Strand
Ripalpha-RA 1..1256 1..1257 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:39:45 Download gff for RE19358.complete
Subject Subject Range Query Range Percent Splice Strand
Ripalpha-RA 1..1256 1..1257 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:23:08 Download gff for RE19358.complete
Subject Subject Range Query Range Percent Splice Strand
Ripalpha-RA 3..1258 1..1257 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:09:36 Download gff for RE19358.complete
Subject Subject Range Query Range Percent Splice Strand
Ripalpha-RA 1..1256 1..1257 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:32:43 Download gff for RE19358.complete
Subject Subject Range Query Range Percent Splice Strand
Ripalpha-RA 3..1258 1..1257 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:27:45 Download gff for RE19358.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10199401..10200236 422..1257 99 <- Minus
2L 10200291..10200356 356..421 100 <- Minus
2L 10200416..10200666 105..355 100 <- Minus
2L 10200869..10200972 1..104 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:27:45 Download gff for RE19358.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10199401..10200236 422..1257 99 <- Minus
2L 10200291..10200356 356..421 100 <- Minus
2L 10200416..10200666 105..355 100 <- Minus
2L 10200869..10200972 1..104 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:27:45 Download gff for RE19358.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10199401..10200236 422..1257 99 <- Minus
2L 10200291..10200356 356..421 100 <- Minus
2L 10200416..10200666 105..355 100 <- Minus
2L 10200869..10200972 1..104 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:23:08 Download gff for RE19358.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10199401..10200236 422..1257 99 <- Minus
arm_2L 10200291..10200356 356..421 100 <- Minus
arm_2L 10200416..10200666 105..355 100 <- Minus
arm_2L 10200869..10200972 1..104 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:43:49 Download gff for RE19358.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10199401..10200236 422..1257 99 <- Minus
2L 10200291..10200356 356..421 100 <- Minus
2L 10200416..10200666 105..355 100 <- Minus
2L 10200869..10200972 1..104 100   Minus

RE19358.pep Sequence

Translation from 232 to 825

> RE19358.pep
MNSTQSPVYRTSVEQKRHAQEVAKRQRMGNQMPRLREMLREKYRKRIIET
RNRCTDAQREIQLSELREILRLELSELEKDVELEELILEELLSDVNEWYA
LGEKNLETLYAEPDEQQKEVLCPVCQIKNLRHHKGAFICECGIRFEHSAN
MEQLQILLQQQIASHELQCTQALRFFIEPASGQLYDMCGSCDYFSSV*

RE19358.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:19:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14134-PA 198 GF14134-PA 1..198 1..197 809 75.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:19:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23975-PA 197 GG23975-PA 1..197 1..197 879 93.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 00:19:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10650-PA 199 GH10650-PA 1..199 1..197 556 61.7 Plus
Dgri\GH22474-PA 87 GH22474-PA 1..61 1..63 175 63.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:13:21
Subject Length Description Subject Range Query Range Score Percent Strand
Ripalpha-PA 197 CG18145-PA 1..197 1..197 1019 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:19:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10856-PA 199 GI10856-PA 1..199 1..197 522 58.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:19:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19181-PA 195 GL19181-PA 1..195 1..197 721 70.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:19:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14816-PA 195 GA14816-PA 1..195 1..197 728 70.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:19:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11954-PA 197 GM11954-PA 1..197 1..197 1008 96.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:19:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22299-PA 197 GD22299-PA 1..197 1..197 1012 97 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:19:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18289-PA 199 GJ18289-PA 1..199 1..197 588 58.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:19:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18721-PA 198 GK18721-PA 1..198 1..197 580 62.5 Plus
Dwil\GK18391-PA 198 GK18391-PA 1..198 1..197 577 62 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:19:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26384-PA 197 GE26384-PA 1..197 1..197 886 94.4 Plus

RE19358.hyp Sequence

Translation from 232 to 825

> RE19358.hyp
MNSTQSPVYRTSVEQKRHAQEVAKRQRMGNQMPRLREMLREKYRKRIIET
RNRCTDAQREIQLSELREILRLELSELEKDVELEELILEELLSDVNEWYA
LGEKNLETLYAEPDEQQKEVLCPVCQIKNLRHHKGAFICECGIRFEHSAN
MEQLQILLQQQIASHELQCTQALRFFIEPASGQLYDMCGSCDYFSSV*

RE19358.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:44:59
Subject Length Description Subject Range Query Range Score Percent Strand
Ripalpha-PA 197 CG18145-PA 1..197 1..197 1019 100 Plus