![]() | BDGP Sequence Production Resources |
Search the DGRC for RE19358
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 193 |
Well: | 58 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Ripalpha-RA |
Protein status: | RE19358.pep: gold |
Preliminary Size: | 803 |
Sequenced Size: | 1273 |
Gene | Date | Evidence |
---|---|---|
CG18145 | 2002-01-01 | Sim4 clustering to Release 2 |
CG18145 | 2002-02-22 | Blastp of sequenced clone |
CG18145 | 2003-01-01 | Sim4 clustering to Release 3 |
Ripalpha | 2008-04-29 | Release 5.5 accounting |
Ripalpha | 2008-08-15 | Release 5.9 accounting |
Ripalpha | 2008-12-18 | 5.12 accounting |
1273 bp (1273 high quality bases) assembled on 2002-02-22
GenBank Submission: AY089598
> RE19358.complete ATCGAAGAAGTGCCACCACTAGCAGAGCAACAGCAAATTGCGCGGATTTT TTTTTTTAGCAAAAAAGTTGTGTTTTTCAACTATTTCCGATTGCTAATTA CTAGATCACTATCAATCACCAACAGCGCTATAAAATTGGAACCTTGCCTT ATTGACGACACTGACCTACCATATCTAGTTAAAAAAAAAGATTAAAAACA AACAAAATAACCACATATACAAATAAACCGAAATGAACTCCACTCAAAGC CCGGTTTATCGCACCTCCGTGGAGCAAAAGCGGCATGCTCAAGAAGTGGC CAAAAGACAGCGGATGGGCAACCAAATGCCAAGACTTCGCGAAATGCTGC GAGAGAAATACCGCAAGCGCATCATAGAAACGCGCAATAGATGCACGGAT GCCCAACGAGAAATCCAATTGTCCGAACTCAGGGAAATCCTGCGCCTGGA ACTCAGTGAGCTAGAGAAGGATGTGGAGCTTGAGGAGCTGATTCTGGAGG AGCTACTATCCGATGTCAACGAGTGGTATGCCCTGGGCGAAAAGAATCTG GAAACGCTATACGCAGAGCCCGATGAGCAGCAAAAGGAGGTTTTATGCCC AGTTTGTCAGATTAAAAACCTACGCCATCACAAAGGTGCCTTCATCTGCG AGTGTGGCATCCGCTTCGAGCACTCTGCGAACATGGAACAGCTGCAGATA CTGCTGCAACAACAAATCGCCAGCCATGAACTTCAGTGCACTCAGGCCCT GCGATTTTTCATCGAACCCGCTTCGGGACAACTATACGACATGTGCGGCA GCTGCGACTACTTCTCCTCCGTCTAGGTCGTTTATGGAGCTGGTTTCTAC CGCTGACTGCTGATAGCTAGTTTAAAGGAGTTTATTAGTTATAATAAGAT AAGTTACATAAGTTAAACTTCAGACAGTCTTATCAGTTTGGAAAACCAGA GATCTGCACAGAAGATTTTTTAGATCCGAAGGCTTTATATGCGTATTAAA TTTTTGAAACAGTGATACATGATATTCCCCCCCTAATTAATCTAAATCCA AAGAATGATATGAGTTATGGCTAGAAATGAGATCTTTAAGCATATTGTTA TAATTGCACAACAAATTAAAATTAAAATCTTAGGAATAACAGATTTATAA AATGTATTCTAGGCTCTTACAAAATTCAAACTAAACCATTCTTCTAATGT GGCATTCTAGATTAAGAAAATAAATCAGGTGCGAGACTAAGTTTGATTTA TGAATACAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Ripalpha-RA | 1279 | Ripalpha-RA | 14..1274 | 1..1261 | 6290 | 99.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 10198286..10199121 | 1256..421 | 4180 | 100 | Minus |
chr2L | 23010047 | chr2L | 10199300..10199553 | 355..102 | 1255 | 99.6 | Minus |
chr2L | 23010047 | chr2L | 10199753..10199856 | 104..1 | 520 | 100 | Minus |
chr2L | 23010047 | chr2L | 10199175..10199242 | 421..354 | 340 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 10199397..10200237 | 1261..421 | 4190 | 99.9 | Minus |
2L | 23513712 | 2L | 10200416..10200669 | 355..102 | 1270 | 100 | Minus |
2L | 23513712 | 2L | 10200869..10200972 | 104..1 | 520 | 100 | Minus |
2L | 23513712 | 2L | 10200291..10200358 | 421..354 | 340 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 10199397..10200237 | 1261..421 | 4190 | 99.8 | Minus |
2L | 23513712 | 2L | 10200416..10200669 | 355..102 | 1270 | 100 | Minus |
2L | 23513712 | 2L | 10200869..10200972 | 104..1 | 520 | 100 | Minus |
2L | 23513712 | 2L | 10200291..10200358 | 421..354 | 340 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
invader3 | 5484 | invader3 INVADER3 5484bp | 5038..5085 | 1100..1149 | 110 | 72 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 10198285..10199120 | 422..1257 | 99 | <- | Minus |
chr2L | 10199175..10199240 | 356..421 | 100 | <- | Minus |
chr2L | 10199300..10199550 | 105..355 | 99 | <- | Minus |
chr2L | 10199753..10199856 | 1..104 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ripalpha-RA | 1..594 | 233..826 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ripalpha-RA | 1..594 | 233..826 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ripalpha-RA | 1..594 | 233..826 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ripalpha-RA | 1..594 | 233..826 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ripalpha-RA | 1..594 | 233..826 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ripalpha-RA | 1..1256 | 1..1257 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ripalpha-RA | 1..1256 | 1..1257 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ripalpha-RA | 3..1258 | 1..1257 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ripalpha-RA | 1..1256 | 1..1257 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ripalpha-RA | 3..1258 | 1..1257 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 10199401..10200236 | 422..1257 | 99 | <- | Minus |
2L | 10200291..10200356 | 356..421 | 100 | <- | Minus |
2L | 10200416..10200666 | 105..355 | 100 | <- | Minus |
2L | 10200869..10200972 | 1..104 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 10199401..10200236 | 422..1257 | 99 | <- | Minus |
2L | 10200291..10200356 | 356..421 | 100 | <- | Minus |
2L | 10200416..10200666 | 105..355 | 100 | <- | Minus |
2L | 10200869..10200972 | 1..104 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 10199401..10200236 | 422..1257 | 99 | <- | Minus |
2L | 10200291..10200356 | 356..421 | 100 | <- | Minus |
2L | 10200416..10200666 | 105..355 | 100 | <- | Minus |
2L | 10200869..10200972 | 1..104 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 10199401..10200236 | 422..1257 | 99 | <- | Minus |
arm_2L | 10200291..10200356 | 356..421 | 100 | <- | Minus |
arm_2L | 10200416..10200666 | 105..355 | 100 | <- | Minus |
arm_2L | 10200869..10200972 | 1..104 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 10199401..10200236 | 422..1257 | 99 | <- | Minus |
2L | 10200291..10200356 | 356..421 | 100 | <- | Minus |
2L | 10200416..10200666 | 105..355 | 100 | <- | Minus |
2L | 10200869..10200972 | 1..104 | 100 | Minus |
Translation from 232 to 825
> RE19358.pep MNSTQSPVYRTSVEQKRHAQEVAKRQRMGNQMPRLREMLREKYRKRIIET RNRCTDAQREIQLSELREILRLELSELEKDVELEELILEELLSDVNEWYA LGEKNLETLYAEPDEQQKEVLCPVCQIKNLRHHKGAFICECGIRFEHSAN MEQLQILLQQQIASHELQCTQALRFFIEPASGQLYDMCGSCDYFSSV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF14134-PA | 198 | GF14134-PA | 1..198 | 1..197 | 809 | 75.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG23975-PA | 197 | GG23975-PA | 1..197 | 1..197 | 879 | 93.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH10650-PA | 199 | GH10650-PA | 1..199 | 1..197 | 556 | 61.7 | Plus |
Dgri\GH22474-PA | 87 | GH22474-PA | 1..61 | 1..63 | 175 | 63.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Ripalpha-PA | 197 | CG18145-PA | 1..197 | 1..197 | 1019 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI10856-PA | 199 | GI10856-PA | 1..199 | 1..197 | 522 | 58.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL19181-PA | 195 | GL19181-PA | 1..195 | 1..197 | 721 | 70.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA14816-PA | 195 | GA14816-PA | 1..195 | 1..197 | 728 | 70.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM11954-PA | 197 | GM11954-PA | 1..197 | 1..197 | 1008 | 96.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD22299-PA | 197 | GD22299-PA | 1..197 | 1..197 | 1012 | 97 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ18289-PA | 199 | GJ18289-PA | 1..199 | 1..197 | 588 | 58.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK18721-PA | 198 | GK18721-PA | 1..198 | 1..197 | 580 | 62.5 | Plus |
Dwil\GK18391-PA | 198 | GK18391-PA | 1..198 | 1..197 | 577 | 62 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE26384-PA | 197 | GE26384-PA | 1..197 | 1..197 | 886 | 94.4 | Plus |
Translation from 232 to 825
> RE19358.hyp MNSTQSPVYRTSVEQKRHAQEVAKRQRMGNQMPRLREMLREKYRKRIIET RNRCTDAQREIQLSELREILRLELSELEKDVELEELILEELLSDVNEWYA LGEKNLETLYAEPDEQQKEVLCPVCQIKNLRHHKGAFICECGIRFEHSAN MEQLQILLQQQIASHELQCTQALRFFIEPASGQLYDMCGSCDYFSSV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Ripalpha-PA | 197 | CG18145-PA | 1..197 | 1..197 | 1019 | 100 | Plus |