BDGP Sequence Production Resources |
Search the DGRC for RE19513
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 195 |
Well: | 13 |
Vector: | pFlc-1 |
Associated Gene/Transcript | sun-RA |
Protein status: | RE19513.pep: gold |
Sequenced Size: | 836 |
Gene | Date | Evidence |
---|---|---|
CG9032 | 2001-12-14 | Blastp of sequenced clone |
CG9032 | 2002-01-01 | Sim4 clustering to Release 2 |
sun | 2008-04-29 | Release 5.5 accounting |
sun | 2008-04-29 | Stopped prior to 5.5 |
sun | 2008-08-15 | Release 5.9 accounting |
sun | 2008-12-18 | 5.12 accounting |
836 bp (836 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071158
> RE19513.complete ACTGACCGGATTCAGAAAGGGAATATCTTATATATTTTTTGTGTAGCGTG AATATATTTCGAATAAACCGATCACAATGACTGCCTGGAGAGCTGCCGGA ATTACCTACATCCAATACTCCAACATCGCCGCTCGCATTTTGCGCGAGTC CTTGAAGACGGGACTGCGTGCGGATGCCGCCAAGCGCGACGCGAGCCATG TGAAGTTCACTCCCTGGGCAAATGGCAAGCCAGCTCAGCGTCAAACCCAA TCGGAATCCTAGATGCTTTTCAGTGGCCACTCGAGAATGATTCGCAACAA CTAAGATCCGCCGAAGCTGCAATGTTGTAAAATCATGAAAAATAAATAAA ATTAAATAAATGTAATTTATTTAAACACGATGATTTTAATTGTTCTTAAA TGTGGCATTTATTTGGGCGTTCCGTTTAGAGATCGCGACCGATGAAACGG ACTTCTAGCAAAGATTTAAATATAGACTCAATAGAATATTGTAATTTTGA AAAGAACTATTGGTCAGGTTCACCAGAAGCCTTTTAATTGGGATCAGTGA TAGGTTTCTTGCTATAATTTTGTCAACGCATATTTGTATAGAATGATTTT ATACACATAATGCTGAACCAATTGAATTGTTACTTATATTTTGCGCTTTA AATATACACATATAGACATTATTTATGTTAATTATTATCCAGTTAGTTTA TATTTTAATTTAAATATATATATATATATATTTTTAAGGTAGAGTATTTT GGATTATCCTTCAAAAATTATCGATTTGCTACCACTAAGACCGATTAAAT TGCTACCGAAGTGCTATTTCAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
sun-RA | 948 | sun-RA | 129..948 | 1..820 | 4100 | 100 | Plus |
sun-RB | 998 | sun-RB | 414..998 | 236..820 | 2925 | 100 | Plus |
CG8578-RA | 1683 | CG8578-RA | 1438..1683 | 822..577 | 1230 | 100 | Minus |
sun-RB | 998 | sun-RB | 129..365 | 1..237 | 1185 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 15737262..15737845 | 820..237 | 2920 | 100 | Minus |
chrX | 22417052 | chrX | 15738727..15738857 | 236..106 | 655 | 100 | Minus |
chrX | 22417052 | chrX | 15738977..15739081 | 105..1 | 525 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 15738727..15738857 | 106..236 | 100 | <- | Minus |
chrX | 15738977..15739081 | 1..105 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sun-RA | 1..186 | 77..262 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sun-RA | 1..186 | 77..262 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sun-RA | 1..186 | 77..262 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sun-RA | 1..186 | 77..262 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sun-RA | 1..186 | 77..262 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sun-RA | 1..820 | 1..820 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sun-RA | 1..820 | 1..820 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sun-RA | 19..400 | 1..382 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sun-RA | 1..820 | 1..820 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8578-RC | 1410..1847 | 383..820 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 15847421..15848004 | 237..820 | 100 | <- | Minus |
X | 15848886..15849016 | 106..236 | 100 | <- | Minus |
X | 15849136..15849240 | 1..105 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 15847421..15848004 | 237..820 | 100 | <- | Minus |
X | 15848886..15849016 | 106..236 | 100 | <- | Minus |
X | 15849136..15849240 | 1..105 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 15847421..15848004 | 237..820 | 100 | <- | Minus |
X | 15848886..15849016 | 106..236 | 100 | <- | Minus |
X | 15849136..15849240 | 1..105 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 15741454..15742037 | 237..820 | 100 | <- | Minus |
arm_X | 15742919..15743049 | 106..236 | 100 | <- | Minus |
arm_X | 15743169..15743273 | 1..105 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 15855519..15856102 | 237..820 | 100 | <- | Minus |
X | 15856984..15857114 | 106..236 | 100 | <- | Minus |
X | 15857234..15857338 | 1..105 | 100 | Minus |
Translation from 76 to 261
> RE19513.pep MTAWRAAGITYIQYSNIAARILRESLKTGLRADAAKRDASHVKFTPWANG KPAQRQTQSES*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF17416-PA | 82 | GF17416-PA | 1..54 | 1..54 | 251 | 85.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG19366-PA | 61 | GG19366-PA | 1..61 | 1..61 | 316 | 100 | Plus |
Dere\GG17423-PA | 64 | GG17423-PA | 1..61 | 1..61 | 218 | 60.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH12534-PA | 56 | GH12534-PA | 4..56 | 3..55 | 234 | 81.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
sun-PA | 61 | CG9032-PA | 1..61 | 1..61 | 312 | 100 | Plus |
sun-PB | 57 | CG9032-PB | 1..56 | 1..56 | 275 | 94.6 | Plus |
ATPsynepsilonL-PC | 64 | CG31477-PC | 1..64 | 1..61 | 221 | 68.8 | Plus |
ATPsynepsilonL-PB | 64 | CG31477-PB | 1..64 | 1..61 | 221 | 68.8 | Plus |
ATPsynepsilonL-PA | 64 | CG31477-PA | 1..64 | 1..61 | 221 | 68.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI11196-PA | 56 | GI11196-PA | 3..56 | 2..55 | 224 | 74.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL18058-PA | 62 | GL18058-PA | 4..62 | 3..61 | 266 | 84.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA21492-PA | 62 | GA21492-PA | 4..62 | 3..61 | 266 | 84.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM22520-PA | 61 | GM22520-PA | 1..61 | 1..61 | 316 | 100 | Plus |
Dsec\GM23863-PA | 64 | GM23863-PA | 1..56 | 1..56 | 219 | 71.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD24676-PA | 61 | GD24676-PA | 1..61 | 1..61 | 316 | 100 | Plus |
Dsim\GD18671-PA | 64 | GD18671-PA | 1..56 | 1..56 | 219 | 71.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ18479-PA | 56 | GJ18479-PA | 4..56 | 3..55 | 240 | 84.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK19782-PA | 62 | GK19782-PA | 3..62 | 2..61 | 266 | 83.3 | Plus |
Translation from 76 to 261
> RE19513.hyp MTAWRAAGITYIQYSNIAARILRESLKTGLRADAAKRDASHVKFTPWANG KPAQRQTQSES*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
sun-PA | 61 | CG9032-PA | 1..61 | 1..61 | 312 | 100 | Plus |
sun-PB | 57 | CG9032-PB | 1..56 | 1..56 | 275 | 94.6 | Plus |
CG31477-PC | 64 | CG31477-PC | 1..64 | 1..61 | 221 | 68.8 | Plus |
CG31477-PB | 64 | CG31477-PB | 1..64 | 1..61 | 221 | 68.8 | Plus |
CG31477-PA | 64 | CG31477-PA | 1..64 | 1..61 | 221 | 68.8 | Plus |