BDGP Sequence Production Resources |
Search the DGRC for RE19545
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 195 |
Well: | 45 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Mis12-RA |
Protein status: | RE19545.pep: gold |
Preliminary Size: | 546 |
Sequenced Size: | 848 |
Gene | Date | Evidence |
---|---|---|
CG18156 | 2002-01-01 | Sim4 clustering to Release 2 |
CG18156 | 2002-06-12 | Blastp of sequenced clone |
CG18156 | 2003-01-01 | Sim4 clustering to Release 3 |
Mis12 | 2008-04-29 | Release 5.5 accounting |
Mis12 | 2008-08-15 | Release 5.9 accounting |
Mis12 | 2008-12-18 | 5.12 accounting |
848 bp (848 high quality bases) assembled on 2002-06-12
GenBank Submission: AY071159
> RE19545.complete GTATTCTGAAAACGGTAACACTAATTGCGCGACAATTTGGATTGTTTACG TTTTTATCCAGTTTAATTGTAATATAATTTAAAAAAAATATTGTTGTTAA CTGTCATAATGGACTTCAATAGCCTAGCCTACGATCAGAAGTTCTTCAAT TTCACAGCGGCACAGTTGTCTGCAGAGCGCGAACATATTGTGCAGGACAT AATTAAGAAGGGTATTGGTCAGATCATCGACAAGATCAAGACACCCGCCA CAGCGGAATTGCTGGAAGCCGAGAAGGAGACCGTTGAGCGTCGTTTCCAG GCATCCGCCTCCAAGGGCCTAAAAGCCCTCAGGGAACTGGACAGCAAAGT GTTCCACGTTCCACCGCATGTGCTGCATCCGGAGCACATGTTCGTCGAGA ATCAGTATACCAGCGAAGAGGAGGAGCAGAAGACAGCCAGGTTGGAGGAG CTGAAGGCCAAATACAGAGAGAACATGGCCATGCTGGCGCATTTGAAGAT CGAGGAGGAGAAGTACGCCGCCATGGAGGATCTCATCCAGAAGGAGATCG AAATGCAGGATCGCGTGCAGCGAAGCTGCTCCTCCCTCAACATCACCAAG CTGAAGCAATTCTGGAATCAAGTGCCCCTGCAGATAAAGAAGGAGACTGA TTAAATAAACTAACTGGATCAAGTTTTTTAATCTACATTTCCAATATCTT CTTTCGAAACTAGTTTTAACCCTGGAGTCATTTATAATCACTAAGACTCT TCTATATTCCACTTTACCTATTATTATGTCGTTAACTTAGTTTTAAACTT AAAATTAAATTAAATTAAAATTATTATGAATCCAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Mis12-RA | 836 | Mis12-RA | 1..833 | 1..833 | 4165 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 6960310..6960674 | 833..470 | 1685 | 98.1 | Minus |
chr3L | 24539361 | chr3L | 6960784..6961076 | 471..179 | 1405 | 98.6 | Minus |
chr3L | 24539361 | chr3L | 6961139..6961316 | 179..1 | 830 | 98.9 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 6961131..6961498 | 837..470 | 1825 | 99.7 | Minus |
3L | 28103327 | 3L | 6961609..6961901 | 471..179 | 1465 | 100 | Minus |
3L | 28103327 | 3L | 6961964..6962142 | 179..1 | 895 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 6960354..6960672 | 472..789 | 97 | <- | Minus |
chr3L | 6960784..6961076 | 179..471 | 98 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mis12-RA | 1..546 | 109..654 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mis12-RA | 1..546 | 109..654 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mis12-RA | 1..546 | 109..654 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mis12-RA | 1..546 | 109..654 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mis12-RA | 1..546 | 109..654 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mis12-RA | 1..833 | 1..833 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mis12-RA | 1..833 | 1..833 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mis12-RA | 7..839 | 1..833 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mis12-RA | 1..833 | 1..833 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mis12-RA | 7..839 | 1..833 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 6968035..6968396 | 472..833 | 100 | <- | Minus |
3L | 6968509..6968801 | 179..471 | 100 | <- | Minus |
3L | 6968865..6969042 | 1..178 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 6968035..6968396 | 472..833 | 100 | <- | Minus |
3L | 6968509..6968801 | 179..471 | 100 | <- | Minus |
3L | 6968865..6969042 | 1..178 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 6968035..6968396 | 472..833 | 100 | <- | Minus |
3L | 6968509..6968801 | 179..471 | 100 | <- | Minus |
3L | 6968865..6969042 | 1..178 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 6961135..6961496 | 472..833 | 100 | <- | Minus |
arm_3L | 6961609..6961901 | 179..471 | 100 | <- | Minus |
arm_3L | 6961965..6962142 | 1..178 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 6961135..6961496 | 472..833 | 100 | <- | Minus |
3L | 6961609..6961901 | 179..471 | 100 | <- | Minus |
3L | 6961965..6962142 | 1..178 | 100 | Minus |
Translation from 108 to 653
> RE19545.pep MDFNSLAYDQKFFNFTAAQLSAEREHIVQDIIKKGIGQIIDKIKTPATAE LLEAEKETVERRFQASASKGLKALRELDSKVFHVPPHVLHPEHMFVENQY TSEEEEQKTARLEELKAKYRENMAMLAHLKIEEEKYAAMEDLIQKEIEMQ DRVQRSCSSLNITKLKQFWNQVPLQIKKETD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF14880-PA | 198 | GF14880-PA | 9..180 | 1..172 | 401 | 47.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG15013-PA | 180 | GG15013-PA | 1..180 | 1..180 | 818 | 83.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH10506-PA | 179 | GH10506-PA | 1..165 | 1..165 | 305 | 44.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Mis12-PA | 181 | CG18156-PA | 1..181 | 1..181 | 915 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI18024-PA | 179 | GI18024-PA | 1..172 | 1..172 | 377 | 43.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL19253-PA | 177 | GL19253-PA | 1..172 | 1..172 | 327 | 41.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA25888-PA | 177 | GA25888-PA | 1..172 | 1..172 | 328 | 41.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM13802-PA | 180 | GM13802-PA | 1..180 | 1..180 | 844 | 95.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD13101-PA | 180 | GD13101-PA | 1..180 | 1..180 | 912 | 96.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ19698-PA | 179 | GJ19698-PA | 1..165 | 1..165 | 358 | 47.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK24429-PA | 181 | GK24429-PA | 1..172 | 1..172 | 350 | 45.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE20456-PA | 182 | GE20456-PA | 1..182 | 1..181 | 781 | 87.4 | Plus |
Translation from 108 to 653
> RE19545.hyp MDFNSLAYDQKFFNFTAAQLSAEREHIVQDIIKKGIGQIIDKIKTPATAE LLEAEKETVERRFQASASKGLKALRELDSKVFHVPPHVLHPEHMFVENQY TSEEEEQKTARLEELKAKYRENMAMLAHLKIEEEKYAAMEDLIQKEIEMQ DRVQRSCSSLNITKLKQFWNQVPLQIKKETD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Mis12-PA | 181 | CG18156-PA | 1..181 | 1..181 | 915 | 100 | Plus |