Clone RE19545 Report

Search the DGRC for RE19545

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:195
Well:45
Vector:pFlc-1
Associated Gene/TranscriptMis12-RA
Protein status:RE19545.pep: gold
Preliminary Size:546
Sequenced Size:848

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG18156 2002-01-01 Sim4 clustering to Release 2
CG18156 2002-06-12 Blastp of sequenced clone
CG18156 2003-01-01 Sim4 clustering to Release 3
Mis12 2008-04-29 Release 5.5 accounting
Mis12 2008-08-15 Release 5.9 accounting
Mis12 2008-12-18 5.12 accounting

Clone Sequence Records

RE19545.complete Sequence

848 bp (848 high quality bases) assembled on 2002-06-12

GenBank Submission: AY071159

> RE19545.complete
GTATTCTGAAAACGGTAACACTAATTGCGCGACAATTTGGATTGTTTACG
TTTTTATCCAGTTTAATTGTAATATAATTTAAAAAAAATATTGTTGTTAA
CTGTCATAATGGACTTCAATAGCCTAGCCTACGATCAGAAGTTCTTCAAT
TTCACAGCGGCACAGTTGTCTGCAGAGCGCGAACATATTGTGCAGGACAT
AATTAAGAAGGGTATTGGTCAGATCATCGACAAGATCAAGACACCCGCCA
CAGCGGAATTGCTGGAAGCCGAGAAGGAGACCGTTGAGCGTCGTTTCCAG
GCATCCGCCTCCAAGGGCCTAAAAGCCCTCAGGGAACTGGACAGCAAAGT
GTTCCACGTTCCACCGCATGTGCTGCATCCGGAGCACATGTTCGTCGAGA
ATCAGTATACCAGCGAAGAGGAGGAGCAGAAGACAGCCAGGTTGGAGGAG
CTGAAGGCCAAATACAGAGAGAACATGGCCATGCTGGCGCATTTGAAGAT
CGAGGAGGAGAAGTACGCCGCCATGGAGGATCTCATCCAGAAGGAGATCG
AAATGCAGGATCGCGTGCAGCGAAGCTGCTCCTCCCTCAACATCACCAAG
CTGAAGCAATTCTGGAATCAAGTGCCCCTGCAGATAAAGAAGGAGACTGA
TTAAATAAACTAACTGGATCAAGTTTTTTAATCTACATTTCCAATATCTT
CTTTCGAAACTAGTTTTAACCCTGGAGTCATTTATAATCACTAAGACTCT
TCTATATTCCACTTTACCTATTATTATGTCGTTAACTTAGTTTTAAACTT
AAAATTAAATTAAATTAAAATTATTATGAATCCAAAAAAAAAAAAAAA

RE19545.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:53:57
Subject Length Description Subject Range Query Range Score Percent Strand
Mis12-RA 836 Mis12-RA 1..833 1..833 4165 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:47:45
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 6960310..6960674 833..470 1685 98.1 Minus
chr3L 24539361 chr3L 6960784..6961076 471..179 1405 98.6 Minus
chr3L 24539361 chr3L 6961139..6961316 179..1 830 98.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:40:13 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:47:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6968031..6968398 837..470 1825 99.7 Minus
3L 28110227 3L 6968509..6968801 471..179 1465 100 Minus
3L 28110227 3L 6968864..6969042 179..1 895 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:13:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 6961131..6961498 837..470 1825 99.7 Minus
3L 28103327 3L 6961609..6961901 471..179 1465 100 Minus
3L 28103327 3L 6961964..6962142 179..1 895 100 Minus
Blast to na_te.dros performed on 2019-03-16 04:47:44 has no hits.

RE19545.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:48:29 Download gff for RE19545.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 6960354..6960672 472..789 97 <- Minus
chr3L 6960784..6961076 179..471 98 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:00:23 Download gff for RE19545.complete
Subject Subject Range Query Range Percent Splice Strand
Mis12-RA 1..546 109..654 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:51:00 Download gff for RE19545.complete
Subject Subject Range Query Range Percent Splice Strand
Mis12-RA 1..546 109..654 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:42:13 Download gff for RE19545.complete
Subject Subject Range Query Range Percent Splice Strand
Mis12-RA 1..546 109..654 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:33:14 Download gff for RE19545.complete
Subject Subject Range Query Range Percent Splice Strand
Mis12-RA 1..546 109..654 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:51:02 Download gff for RE19545.complete
Subject Subject Range Query Range Percent Splice Strand
Mis12-RA 1..546 109..654 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:02:07 Download gff for RE19545.complete
Subject Subject Range Query Range Percent Splice Strand
Mis12-RA 1..833 1..833 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:51:00 Download gff for RE19545.complete
Subject Subject Range Query Range Percent Splice Strand
Mis12-RA 1..833 1..833 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:42:13 Download gff for RE19545.complete
Subject Subject Range Query Range Percent Splice Strand
Mis12-RA 7..839 1..833 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:33:14 Download gff for RE19545.complete
Subject Subject Range Query Range Percent Splice Strand
Mis12-RA 1..833 1..833 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:51:02 Download gff for RE19545.complete
Subject Subject Range Query Range Percent Splice Strand
Mis12-RA 7..839 1..833 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:48:29 Download gff for RE19545.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6968035..6968396 472..833 100 <- Minus
3L 6968509..6968801 179..471 100 <- Minus
3L 6968865..6969042 1..178 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:48:29 Download gff for RE19545.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6968035..6968396 472..833 100 <- Minus
3L 6968509..6968801 179..471 100 <- Minus
3L 6968865..6969042 1..178 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:48:29 Download gff for RE19545.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6968035..6968396 472..833 100 <- Minus
3L 6968509..6968801 179..471 100 <- Minus
3L 6968865..6969042 1..178 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:42:13 Download gff for RE19545.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6961135..6961496 472..833 100 <- Minus
arm_3L 6961609..6961901 179..471 100 <- Minus
arm_3L 6961965..6962142 1..178 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:13:52 Download gff for RE19545.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6961135..6961496 472..833 100 <- Minus
3L 6961609..6961901 179..471 100 <- Minus
3L 6961965..6962142 1..178 100   Minus

RE19545.pep Sequence

Translation from 108 to 653

> RE19545.pep
MDFNSLAYDQKFFNFTAAQLSAEREHIVQDIIKKGIGQIIDKIKTPATAE
LLEAEKETVERRFQASASKGLKALRELDSKVFHVPPHVLHPEHMFVENQY
TSEEEEQKTARLEELKAKYRENMAMLAHLKIEEEKYAAMEDLIQKEIEMQ
DRVQRSCSSLNITKLKQFWNQVPLQIKKETD*

RE19545.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 22:57:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14880-PA 198 GF14880-PA 9..180 1..172 401 47.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 22:57:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15013-PA 180 GG15013-PA 1..180 1..180 818 83.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 22:57:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10506-PA 179 GH10506-PA 1..165 1..165 305 44.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:48:53
Subject Length Description Subject Range Query Range Score Percent Strand
Mis12-PA 181 CG18156-PA 1..181 1..181 915 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 22:57:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18024-PA 179 GI18024-PA 1..172 1..172 377 43.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 22:57:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19253-PA 177 GL19253-PA 1..172 1..172 327 41.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 22:57:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA25888-PA 177 GA25888-PA 1..172 1..172 328 41.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 22:57:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13802-PA 180 GM13802-PA 1..180 1..180 844 95.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 22:57:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13101-PA 180 GD13101-PA 1..180 1..180 912 96.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 22:57:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19698-PA 179 GJ19698-PA 1..165 1..165 358 47.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 22:57:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24429-PA 181 GK24429-PA 1..172 1..172 350 45.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 22:57:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20456-PA 182 GE20456-PA 1..182 1..181 781 87.4 Plus

RE19545.hyp Sequence

Translation from 108 to 653

> RE19545.hyp
MDFNSLAYDQKFFNFTAAQLSAEREHIVQDIIKKGIGQIIDKIKTPATAE
LLEAEKETVERRFQASASKGLKALRELDSKVFHVPPHVLHPEHMFVENQY
TSEEEEQKTARLEELKAKYRENMAMLAHLKIEEEKYAAMEDLIQKEIEMQ
DRVQRSCSSLNITKLKQFWNQVPLQIKKETD*

RE19545.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:25:09
Subject Length Description Subject Range Query Range Score Percent Strand
Mis12-PA 181 CG18156-PA 1..181 1..181 915 100 Plus