BDGP Sequence Production Resources |
Search the DGRC for RE19570
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 195 |
Well: | 70 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Vps20-RA |
Protein status: | RE19570.pep: gold |
Sequenced Size: | 742 |
Gene | Date | Evidence |
---|---|---|
CG4071 | 2002-01-01 | Sim4 clustering to Release 2 |
Vps20-RA | 2010-11-11 | Gleaning Pick By Joe Carlson |
742 bp assembled on 2010-12-02
GenBank Submission: BT125800.1
> RE19570.complete GCTGGTCATGGGAGCTTTGTTTGGAAAAACCAGCAAAAAGACGGCTCCTA GTCGGATCACCGACCAGGACAAGGCGGTTCTGCAATTGAAGCAACAGAGG GATCGTCTGAAGCAGTACCAAAAACGCATCGAGACGCAGTTGGAGAATGA TCGCCTCCTGGCAAGGAAGTGCCTACAGCAAGGTCGCAAGGACCGGGCCA AGCTGCTGCTGCGCAAGAAGAAGTACCAGGAGAGTCTGCTGACCAATGCC GACAAACAGCTGGAAAACCTGGAGAAGCTGGCTGCGGACATTGAGTTCGC CCAGGTGGAGATGAAGGTGCTGGACGGCCTCAAAGCGGGCAATGCTGCTC TGAAGAAGGTGCACGAAATGCTTGACATCGACGAAGTTGAGCGAATCATG GACGAGACACGCGAGGGCATCGAAAAGCAGCAGGAAATAGACGCCATACT GACGGATGTGCTGACCACGCAGGACGAGGAGGACGTTTTGGCCGAGCTGG ATGCCCTGGAGGCGGAGGAAGAGCAGCAGAAGGGTGCACAGCTGCCGGAT GTGCCCACCGAAGATCTGCCCATTCCCGCTGAGATCGAGTCCGTCGAGGA GCCGGCAAAGACCAAAGCAACCAAGAAAGTCCTGGTGGAGGCATAGAACC TATAGTAAAACGAAACCAATGCCATTTTGTATGTATATATGTCGTTCAAC TAAATTTCTCGATAAGTCCAATGTGAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 18495347..18495891 | 193..725 | 2510 | 97.8 | Plus |
chr2R | 21145070 | chr2R | 18495174..18495284 | 82..192 | 555 | 100 | Plus |
chr2R | 21145070 | chr2R | 18495032..18495109 | 5..82 | 390 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 18495028..18495109 | 1..82 | 97 | -> | Plus |
chr2R | 18495175..18495284 | 83..192 | 100 | -> | Plus |
chr2R | 18495347..18495891 | 193..725 | 97 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vps20-RA | 1..639 | 8..646 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vps20-RA | 1..639 | 8..646 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vps20-RA | 1..639 | 8..646 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vps20-RA | 1..639 | 8..646 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vps20-RA | 5..729 | 1..725 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vps20-RA | 5..729 | 1..725 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vps20-RA | 17..741 | 1..725 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vps20-RA | 17..741 | 1..725 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 22608537..22608618 | 1..82 | 97 | -> | Plus |
2R | 22608684..22608793 | 83..192 | 100 | -> | Plus |
2R | 22608856..22609388 | 193..725 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 22608537..22608618 | 1..82 | 97 | -> | Plus |
2R | 22608684..22608793 | 83..192 | 100 | -> | Plus |
2R | 22608856..22609388 | 193..725 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 22608537..22608618 | 1..82 | 97 | -> | Plus |
2R | 22608684..22608793 | 83..192 | 100 | -> | Plus |
2R | 22608856..22609388 | 193..725 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 18496042..18496123 | 1..82 | 97 | -> | Plus |
arm_2R | 18496189..18496298 | 83..192 | 100 | -> | Plus |
arm_2R | 18496361..18496893 | 193..725 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 22610055..22610587 | 193..725 | 100 | Plus | |
2R | 22609736..22609817 | 1..82 | 97 | -> | Plus |
2R | 22609883..22609992 | 83..192 | 100 | -> | Plus |
Translation from 0 to 645
> RE19570.hyp LVMGALFGKTSKKTAPSRITDQDKAVLQLKQQRDRLKQYQKRIETQLEND RLLARKCLQQGRKDRAKLLLRKKKYQESLLTNADKQLENLEKLAADIEFA QVEMKVLDGLKAGNAALKKVHEMLDIDEVERIMDETREGIEKQQEIDAIL TDVLTTQDEEDVLAELDALEAEEEQQKGAQLPDVPTEDLPIPAEIESVEE PAKTKATKKVLVEA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Vps20-PC | 212 | CG4071-PC | 1..212 | 3..214 | 1040 | 100 | Plus |
Vps20-PA | 212 | CG4071-PA | 1..212 | 3..214 | 1040 | 100 | Plus |
shrb-PA | 226 | CG8055-PA | 5..211 | 4..213 | 202 | 31.8 | Plus |
CG5498-PB | 448 | CG5498-PB | 239..400 | 19..182 | 156 | 25.9 | Plus |
Translation from 1 to 645
> RE19570.pep LVMGALFGKTSKKTAPSRITDQDKAVLQLKQQRDRLKQYQKRIETQLEND RLLARKCLQQGRKDRAKLLLRKKKYQESLLTNADKQLENLEKLAADIEFA QVEMKVLDGLKAGNAALKKVHEMLDIDEVERIMDETREGIEKQQEIDAIL TDVLTTQDEEDVLAELDALEAEEEQQKGAQLPDVPTEDLPIPAEIESVEE PAKTKATKKVLVEA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11904-PA | 219 | GF11904-PA | 1..219 | 3..214 | 924 | 87.7 | Plus |
Dana\GF12950-PA | 226 | GF12950-PA | 3..195 | 2..190 | 157 | 29.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG21058-PA | 216 | GG21058-PA | 1..216 | 3..214 | 1020 | 95.8 | Plus |
Dere\GG10579-PA | 226 | GG10579-PA | 3..195 | 2..190 | 154 | 31.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH21561-PA | 221 | GH21561-PA | 1..221 | 3..214 | 858 | 79.9 | Plus |
Dgri\GH19872-PA | 228 | GH19872-PA | 3..195 | 2..190 | 146 | 29.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Vps20-PC | 212 | CG4071-PC | 1..212 | 3..214 | 1040 | 100 | Plus |
Vps20-PA | 212 | CG4071-PA | 1..212 | 3..214 | 1040 | 100 | Plus |
shrb-PA | 226 | CG8055-PA | 5..211 | 4..213 | 202 | 31.8 | Plus |
CG5498-PB | 448 | CG5498-PB | 239..400 | 19..182 | 156 | 25.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI19533-PA | 220 | GI19533-PA | 1..188 | 3..193 | 847 | 88.5 | Plus |
Dmoj\GI19821-PA | 227 | GI19821-PA | 3..194 | 2..189 | 143 | 29.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL11590-PA | 212 | GL11590-PA | 1..212 | 3..214 | 846 | 82.9 | Plus |
Dper\GL17464-PA | 231 | GL17464-PA | 3..195 | 2..190 | 158 | 31.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA17936-PA | 212 | GA17936-PA | 1..212 | 3..214 | 846 | 82.9 | Plus |
Dpse\GA20793-PA | 231 | GA20793-PA | 3..195 | 2..190 | 158 | 31.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM15925-PA | 216 | GM15925-PA | 1..216 | 3..214 | 1034 | 96.8 | Plus |
Dsec\GM20627-PA | 226 | GM20627-PA | 3..195 | 2..190 | 153 | 31.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD11680-PA | 216 | GD11680-PA | 1..216 | 3..214 | 1032 | 96.8 | Plus |
Dsim\GD10100-PA | 226 | GD10100-PA | 3..195 | 2..190 | 153 | 31.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ21101-PA | 224 | GJ21101-PA | 1..224 | 3..214 | 834 | 78 | Plus |
Dvir\GJ18577-PA | 228 | GJ18577-PA | 3..195 | 2..190 | 152 | 29.6 | Plus |