Clone RE19796 Report

Search the DGRC for RE19796

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:197
Well:96
Vector:pFlc-1
Associated Gene/Transcriptcrok-RB
Protein status:RE19796.pep: wuzgold
Preliminary Size:1030
Sequenced Size:1042

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17218 2003-02-13 Blastp of sequenced clone
CG17218 2008-04-29 Release 5.5 accounting
CG17218 2008-08-15 Release 5.9 accounting
CG17218 2008-12-18 5.12 accounting

Clone Sequence Records

RE19796.complete Sequence

1042 bp (1042 high quality bases) assembled on 2003-02-13

GenBank Submission: BT003774

> RE19796.complete
GGCTGCTCACACGGTCACACTGCTATTTACACGCCCAAAAAAATTGAATC
CAATTGAAACGCGAAGAAAAACATAAATATAACGATGAAAACACTGGAGA
AATATATCCTATTCGCCATCGTGCTCTGCTGCCTGCTGCAATTGGGCGAT
CAAATGTTGGGACTGTCGCAGCGATAACGATCCCAAATGCGGGGATCCTT
TTGACAACAGCACGCTGGCCATCACCGATTGCCAACAGGCGCCGGAGCTG
GAGCATCTGAAGGGCGTGCGACCGACAATGTGTCGCAAGATCCGGCAGAA
GGTGCACGGTGAATGGCGCTACTTTCGCAGCTGCGCCTACATGGGCGAGC
CGGGCATCGAGGGCGACGAACGCTTCTGCCTGATGCGCACTGGCAGCTAC
AACATCTTCATGGAGTTCTGCACGTGCAACAGCAAGGACGGCTGCAACTC
GGCGGGCATCCATAGGCTAGGACTGATGGGCGTCCTAACTGGCACACTGC
TCTCGGTGATTGTGGCTCATCTTCTGCGGCAATAGGTGGATCCACCTGCT
TCAGCTGTAGCCAATGCCACGCCCCATTTGCCACAAGGCTGATCAGATAG
TATAAACTGTATTAGCATGCTTGCTTGTGTGTTCAACGTAGATATAAAAA
CTGAAGAATTCTATAATTGTAACCGAGATATTTAGCAAATATTTTTAAAA
TTTGTAAATTACCTTAATTAGCAGTAACTTACCTGACGCGCGAACAGTCT
TGTGGTGAATGAGCGATGTGTAATCAAGTGCCTTTTCTGTAACGGACTCG
TATTGTAACTTAAGCCTGGAATACTATTTCCGTCCAAAAAATATCTTACG
CCTATGACATTCCATCTCGTAAACTGAATCTTGTAATACTTTCTATTTTC
TACATTTATTTTGTAATGTTTTTGCGAAAGATCGCCTAGTTTTAGTCGAC
TTACAAGTTTTTATTGTAATGCGATGTCAAATAGAACATTTTTGAATAAT
TAAAAAAAAAAACGGTTATACACTAAAAAAAAAAAAAAAAAA

RE19796.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:22:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG17218-RB 1024 CG17218-RB 4..1024 2..1022 5105 100 Plus
CG17218-RA 1089 CG17218-RA 57..1085 2..1025 5045 99.5 Plus
CG17218.a 1543 CG17218.a 57..1085 2..1025 5045 99.5 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:47:07
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 12171867..12172746 145..1024 4385 99.9 Plus
chr2L 23010047 chr2L 12171641..12171785 2..146 725 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:40:20 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:47:05
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12173213..12174093 145..1025 4405 100 Plus
2L 23513712 2L 12172987..12173131 2..146 725 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:00:28
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12173213..12174093 145..1025 4405 100 Plus
2L 23513712 2L 12172987..12173131 2..146 725 100 Plus
Blast to na_te.dros performed 2019-03-16 12:47:06
Subject Length Description Subject Range Query Range Score Percent Strand
mdg3 5519 mdg3 DMMDG3 5519bp Derived from X95908 (e990667) (Rel. 49, Last updated, Version 3). 5000..5062 917..857 121 68.3 Minus

RE19796.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:47:53 Download gff for RE19796.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 12171640..12171784 1..145 99 -> Plus
chr2L 12171868..12172746 146..1024 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:00:29 Download gff for RE19796.complete
Subject Subject Range Query Range Percent Splice Strand
CG17218-RA 1..456 85..535 98   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:52:26 Download gff for RE19796.complete
Subject Subject Range Query Range Percent Splice Strand
crok-RA 1..456 85..535 98   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:38:50 Download gff for RE19796.complete
Subject Subject Range Query Range Percent Splice Strand
crok-RA 1..456 85..535 98   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:43:33 Download gff for RE19796.complete
Subject Subject Range Query Range Percent Splice Strand
CG17218-RA 1..456 85..535 98   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:55:26 Download gff for RE19796.complete
Subject Subject Range Query Range Percent Splice Strand
crok-RA 1..456 85..535 98   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:06:26 Download gff for RE19796.complete
Subject Subject Range Query Range Percent Splice Strand
CG17218-RB 3..1024 1..1022 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:52:26 Download gff for RE19796.complete
Subject Subject Range Query Range Percent Splice Strand
crok-RB 3..1024 1..1022 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:38:50 Download gff for RE19796.complete
Subject Subject Range Query Range Percent Splice Strand
crok-RA 6..1033 1..1023 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:43:33 Download gff for RE19796.complete
Subject Subject Range Query Range Percent Splice Strand
CG17218-RB 3..1024 1..1022 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:55:26 Download gff for RE19796.complete
Subject Subject Range Query Range Percent Splice Strand
crok-RA 6..1033 1..1023 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:47:53 Download gff for RE19796.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12172986..12173130 1..145 99 -> Plus
2L 12173214..12174092 146..1024 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:47:53 Download gff for RE19796.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12172986..12173130 1..145 99 -> Plus
2L 12173214..12174092 146..1024 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:47:53 Download gff for RE19796.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12172986..12173130 1..145 99 -> Plus
2L 12173214..12174092 146..1024 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:38:50 Download gff for RE19796.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12172986..12173130 1..145 99 -> Plus
arm_2L 12173214..12174092 146..1024 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:14:22 Download gff for RE19796.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12173214..12174092 146..1024 100   Plus
2L 12172986..12173130 1..145 99 -> Plus

RE19796.hyp Sequence

Translation from 277 to 534

> RE19796.hyp
MCRKIRQKVHGEWRYFRSCAYMGEPGIEGDERFCLMRTGSYNIFMEFCTC
NSKDGCNSAGIHRLGLMGVLTGTLLSVIVAHLLRQ*

RE19796.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:05:10
Subject Length Description Subject Range Query Range Score Percent Strand
crok-PA 151 CG17218-PA 67..151 1..85 466 100 Plus

RE19796.pep Sequence

Translation from 277 to 534

> RE19796.pep
MCRKIRQKVHGEWRYFRSCAYMGEPGIEGDERFCLMRTGSYNIFMEFCTC
NSKDGCNSAGIHRLGLMGVLTGTLLSVIVAHLLRQ*

RE19796.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 07:41:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14191-PA 151 GF14191-PA 67..151 1..85 421 89.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 07:41:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23775-PA 151 GG23775-PA 67..151 1..85 444 96.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 07:41:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11641-PA 151 GH11641-PA 67..151 1..85 375 81.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:22:07
Subject Length Description Subject Range Query Range Score Percent Strand
crok-PA 151 CG17218-PA 67..151 1..85 466 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 07:41:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17943-PA 151 GI17943-PA 67..151 1..85 389 82.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 07:41:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18618-PA 151 GL18618-PA 67..151 1..85 362 87.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 07:41:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14397-PA 151 GA14397-PA 67..151 1..85 362 87.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 07:41:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26756-PA 128 GM26756-PA 44..128 1..85 455 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 07:41:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23827-PA 151 GD23827-PA 67..151 1..85 448 98.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 07:41:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17714-PA 151 GJ17714-PA 67..151 1..85 388 84.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 07:41:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15491-PA 151 GK15491-PA 67..151 1..85 400 85.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 07:41:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18579-PA 151 GE18579-PA 67..151 1..85 448 97.6 Plus