BDGP Sequence Production Resources |
Search the DGRC for RE19796
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 197 |
Well: | 96 |
Vector: | pFlc-1 |
Associated Gene/Transcript | crok-RB |
Protein status: | RE19796.pep: wuzgold |
Preliminary Size: | 1030 |
Sequenced Size: | 1042 |
Gene | Date | Evidence |
---|---|---|
CG17218 | 2003-02-13 | Blastp of sequenced clone |
CG17218 | 2008-04-29 | Release 5.5 accounting |
CG17218 | 2008-08-15 | Release 5.9 accounting |
CG17218 | 2008-12-18 | 5.12 accounting |
1042 bp (1042 high quality bases) assembled on 2003-02-13
GenBank Submission: BT003774
> RE19796.complete GGCTGCTCACACGGTCACACTGCTATTTACACGCCCAAAAAAATTGAATC CAATTGAAACGCGAAGAAAAACATAAATATAACGATGAAAACACTGGAGA AATATATCCTATTCGCCATCGTGCTCTGCTGCCTGCTGCAATTGGGCGAT CAAATGTTGGGACTGTCGCAGCGATAACGATCCCAAATGCGGGGATCCTT TTGACAACAGCACGCTGGCCATCACCGATTGCCAACAGGCGCCGGAGCTG GAGCATCTGAAGGGCGTGCGACCGACAATGTGTCGCAAGATCCGGCAGAA GGTGCACGGTGAATGGCGCTACTTTCGCAGCTGCGCCTACATGGGCGAGC CGGGCATCGAGGGCGACGAACGCTTCTGCCTGATGCGCACTGGCAGCTAC AACATCTTCATGGAGTTCTGCACGTGCAACAGCAAGGACGGCTGCAACTC GGCGGGCATCCATAGGCTAGGACTGATGGGCGTCCTAACTGGCACACTGC TCTCGGTGATTGTGGCTCATCTTCTGCGGCAATAGGTGGATCCACCTGCT TCAGCTGTAGCCAATGCCACGCCCCATTTGCCACAAGGCTGATCAGATAG TATAAACTGTATTAGCATGCTTGCTTGTGTGTTCAACGTAGATATAAAAA CTGAAGAATTCTATAATTGTAACCGAGATATTTAGCAAATATTTTTAAAA TTTGTAAATTACCTTAATTAGCAGTAACTTACCTGACGCGCGAACAGTCT TGTGGTGAATGAGCGATGTGTAATCAAGTGCCTTTTCTGTAACGGACTCG TATTGTAACTTAAGCCTGGAATACTATTTCCGTCCAAAAAATATCTTACG CCTATGACATTCCATCTCGTAAACTGAATCTTGTAATACTTTCTATTTTC TACATTTATTTTGTAATGTTTTTGCGAAAGATCGCCTAGTTTTAGTCGAC TTACAAGTTTTTATTGTAATGCGATGTCAAATAGAACATTTTTGAATAAT TAAAAAAAAAAACGGTTATACACTAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
mdg3 | 5519 | mdg3 DMMDG3 5519bp Derived from X95908 (e990667) (Rel. 49, Last updated, Version 3). | 5000..5062 | 917..857 | 121 | 68.3 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 12171640..12171784 | 1..145 | 99 | -> | Plus |
chr2L | 12171868..12172746 | 146..1024 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17218-RA | 1..456 | 85..535 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
crok-RA | 1..456 | 85..535 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
crok-RA | 1..456 | 85..535 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17218-RA | 1..456 | 85..535 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
crok-RA | 1..456 | 85..535 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17218-RB | 3..1024 | 1..1022 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
crok-RB | 3..1024 | 1..1022 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
crok-RA | 6..1033 | 1..1023 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17218-RB | 3..1024 | 1..1022 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
crok-RA | 6..1033 | 1..1023 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 12172986..12173130 | 1..145 | 99 | -> | Plus |
2L | 12173214..12174092 | 146..1024 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 12172986..12173130 | 1..145 | 99 | -> | Plus |
2L | 12173214..12174092 | 146..1024 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 12172986..12173130 | 1..145 | 99 | -> | Plus |
2L | 12173214..12174092 | 146..1024 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 12172986..12173130 | 1..145 | 99 | -> | Plus |
arm_2L | 12173214..12174092 | 146..1024 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 12173214..12174092 | 146..1024 | 100 | Plus | |
2L | 12172986..12173130 | 1..145 | 99 | -> | Plus |
Translation from 277 to 534
> RE19796.hyp MCRKIRQKVHGEWRYFRSCAYMGEPGIEGDERFCLMRTGSYNIFMEFCTC NSKDGCNSAGIHRLGLMGVLTGTLLSVIVAHLLRQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
crok-PA | 151 | CG17218-PA | 67..151 | 1..85 | 466 | 100 | Plus |
Translation from 277 to 534
> RE19796.pep MCRKIRQKVHGEWRYFRSCAYMGEPGIEGDERFCLMRTGSYNIFMEFCTC NSKDGCNSAGIHRLGLMGVLTGTLLSVIVAHLLRQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF14191-PA | 151 | GF14191-PA | 67..151 | 1..85 | 421 | 89.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG23775-PA | 151 | GG23775-PA | 67..151 | 1..85 | 444 | 96.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH11641-PA | 151 | GH11641-PA | 67..151 | 1..85 | 375 | 81.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
crok-PA | 151 | CG17218-PA | 67..151 | 1..85 | 466 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI17943-PA | 151 | GI17943-PA | 67..151 | 1..85 | 389 | 82.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL18618-PA | 151 | GL18618-PA | 67..151 | 1..85 | 362 | 87.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA14397-PA | 151 | GA14397-PA | 67..151 | 1..85 | 362 | 87.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM26756-PA | 128 | GM26756-PA | 44..128 | 1..85 | 455 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD23827-PA | 151 | GD23827-PA | 67..151 | 1..85 | 448 | 98.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ17714-PA | 151 | GJ17714-PA | 67..151 | 1..85 | 388 | 84.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK15491-PA | 151 | GK15491-PA | 67..151 | 1..85 | 400 | 85.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE18579-PA | 151 | GE18579-PA | 67..151 | 1..85 | 448 | 97.6 | Plus |