Clone RE19804 Report

Search the DGRC for RE19804

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:198
Well:4
Vector:pFlc-1
Associated Gene/TranscriptCG13298-RA
Protein status:RE19804.pep: gold
Preliminary Size:765
Sequenced Size:943

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13298 2002-01-01 Sim4 clustering to Release 2
CG13298 2002-02-22 Blastp of sequenced clone
CG13298 2003-01-01 Sim4 clustering to Release 3
CG13298 2008-04-29 Release 5.5 accounting
CG13298 2008-08-15 Release 5.9 accounting
CG13298 2008-12-18 5.12 accounting

Clone Sequence Records

RE19804.complete Sequence

943 bp (943 high quality bases) assembled on 2002-02-22

GenBank Submission: AY089603

> RE19804.complete
ACTCTCGCCATTTAGAGTGCCCACATTCGCCACCCTGTTCAATTTTGTTT
GGGTTTGAGGCCAGACAGAGGAGTCATTAATTTTAAACAAAGGACCACGC
TTCAGGACATTCATCCCGGGTCAGACAAAGCCGCCACACACTTTCCTCGA
GGCCGAGTGAAAGTTTCTCGCCTTGTCGCCGCTTAACATCCGAAGCGACC
GGACATGAACAAGCGCAACCATATCCGCCTGCCGCCAGAGGTGAATCGGC
TATTGTACGTGCGGAACCTGCCGTACAAAATCACCTCGGACGAGATGTAC
GACATATTCGGCAAATTTGGAGCCATTCGACAGATACGCGTAGGCAACAC
TCCGGAAACGCGTGGCACCGCCTTTGTCGTCTACGAGGACATTTTCGATG
CCAAGAACGCCTGTGACCATTTATCGGGTTTTAATGTGTGCAATCGCTAT
CTGGTGGTGCTCTACTACCAATCCAACAAGGCCTTCAAGCGCGTGGACAT
GGACAAGAAACAGGAGGAACTGAACAACATTAAGGCCAAGTACAATCTGA
AGACGCCTGAAGCTCCTTAGAACCCACACTTGGTGCGGCAGGCGGTGATG
GGGCATAGCCAGACATTGGGCCCCACCAGATGACGCCCCCACTTCCATCG
ACCATTTTCCATTGTTTAGGGAACTTCTTGCTCTGCTTATGTGTATACCA
AATTTTTGCTATCTACTTGTAGATTTTTTTGATCGCATTTTGTATCATTT
GAATCTAATCATTATCATCCATCCATCACTCCATCTATCATATAAACGGC
CGGATATCGCGGAACGCAGACATTTGCGCCCGGTTCCGACTGTTTGCAAT
CATTTGACGACATTAAGACACTCTCTCATCAAAATAACAAGCAAGTGAAA
GTAAAAATAAAAAAAAATTGAAAAACTAAAAAAAAAAAAAAAA

RE19804.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:26:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG13298-RA 1081 CG13298-RA 127..1054 1..928 4640 100 Plus
CG13298.b 1014 CG13298.b 304..1009 223..928 3530 100 Plus
CG13298.a 781 CG13298.a 71..776 223..928 3530 100 Plus
CG13298.b 1014 CG13298.b 12..233 1..222 1110 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:59:20
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 6184626..6185211 927..342 2915 99.8 Minus
chr3L 24539361 chr3L 6185467..6185688 222..1 1110 100 Minus
chr3L 24539361 chr3L 6185278..6185396 341..223 595 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:40:21 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:59:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6192123..6192709 928..342 2935 100 Minus
3L 28110227 3L 6192965..6193186 222..1 1110 100 Minus
3L 28110227 3L 6192776..6192894 341..223 595 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:54:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 6185223..6185809 928..342 2935 100 Minus
3L 28103327 3L 6186065..6186286 222..1 1110 100 Minus
3L 28103327 3L 6185876..6185994 341..223 595 100 Minus
Blast to na_te.dros performed on 2019-03-16 20:59:18 has no hits.

RE19804.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:00:30 Download gff for RE19804.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 6184651..6185211 342..902 99 <- Minus
chr3L 6185278..6185396 223..341 100 <- Minus
chr3L 6185467..6185688 1..222 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:00:30 Download gff for RE19804.complete
Subject Subject Range Query Range Percent Splice Strand
CG13298-RA 1..366 205..570 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:39:35 Download gff for RE19804.complete
Subject Subject Range Query Range Percent Splice Strand
CG13298-RA 1..366 205..570 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:31:41 Download gff for RE19804.complete
Subject Subject Range Query Range Percent Splice Strand
CG13298-RA 1..366 205..570 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:09:30 Download gff for RE19804.complete
Subject Subject Range Query Range Percent Splice Strand
CG13298-RA 1..366 205..570 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:02:14 Download gff for RE19804.complete
Subject Subject Range Query Range Percent Splice Strand
CG13298-RA 1..366 205..570 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:04:37 Download gff for RE19804.complete
Subject Subject Range Query Range Percent Splice Strand
CG13298-RA 1..902 1..902 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:39:35 Download gff for RE19804.complete
Subject Subject Range Query Range Percent Splice Strand
CG13298-RA 1..902 1..902 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:31:41 Download gff for RE19804.complete
Subject Subject Range Query Range Percent Splice Strand
CG13298-RA 1..895 8..902 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:09:30 Download gff for RE19804.complete
Subject Subject Range Query Range Percent Splice Strand
CG13298-RA 1..902 1..902 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:02:14 Download gff for RE19804.complete
Subject Subject Range Query Range Percent Splice Strand
CG13298-RA 1..895 8..902 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:00:30 Download gff for RE19804.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6192149..6192709 342..902 100 <- Minus
3L 6192776..6192894 223..341 100 <- Minus
3L 6192965..6193186 1..222 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:00:30 Download gff for RE19804.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6192149..6192709 342..902 100 <- Minus
3L 6192776..6192894 223..341 100 <- Minus
3L 6192965..6193186 1..222 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:00:30 Download gff for RE19804.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6192149..6192709 342..902 100 <- Minus
3L 6192776..6192894 223..341 100 <- Minus
3L 6192965..6193186 1..222 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:31:41 Download gff for RE19804.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6185249..6185809 342..902 100 <- Minus
arm_3L 6185876..6185994 223..341 100 <- Minus
arm_3L 6186065..6186286 1..222 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:43:43 Download gff for RE19804.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6185249..6185809 342..902 100 <- Minus
3L 6185876..6185994 223..341 100 <- Minus
3L 6186065..6186286 1..222 100   Minus

RE19804.hyp Sequence

Translation from 204 to 569

> RE19804.hyp
MNKRNHIRLPPEVNRLLYVRNLPYKITSDEMYDIFGKFGAIRQIRVGNTP
ETRGTAFVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYQSNKAFKRVDMD
KKQEELNNIKAKYNLKTPEAP*

RE19804.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:22:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG13298-PA 121 CG13298-PA 1..121 1..121 642 100 Plus

RE19804.pep Sequence

Translation from 204 to 569

> RE19804.pep
MNKRNHIRLPPEVNRLLYVRNLPYKITSDEMYDIFGKFGAIRQIRVGNTP
ETRGTAFVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYQSNKAFKRVDMD
KKQEELNNIKAKYNLKTPEAP*

RE19804.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 19:15:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10910-PA 121 GF10910-PA 1..121 1..121 643 100 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 19:15:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14070-PA 121 GG14070-PA 1..121 1..121 643 100 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 19:15:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16287-PA 121 GH16287-PA 1..121 1..121 627 97.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:31:03
Subject Length Description Subject Range Query Range Score Percent Strand
Sf3b6-PA 121 CG13298-PA 1..121 1..121 642 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 19:15:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13232-PA 121 GI13232-PA 1..120 1..120 622 97.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 19:15:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22529-PA 121 GL22529-PA 1..121 1..121 643 100 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 19:15:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12181-PA 121 GA12181-PA 1..121 1..121 643 100 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 19:15:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13852-PA 121 GM13852-PA 1..121 1..121 643 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 19:15:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13137-PA 121 GD13137-PA 1..121 1..121 643 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 19:15:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12004-PA 121 GJ12004-PA 1..121 1..121 627 97.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 19:15:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17258-PA 121 GK17258-PA 1..121 1..121 634 99.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 19:15:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20495-PA 121 GE20495-PA 1..121 1..121 643 100 Plus