BDGP Sequence Production Resources |
Search the DGRC for RE19804
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 198 |
Well: | 4 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG13298-RA |
Protein status: | RE19804.pep: gold |
Preliminary Size: | 765 |
Sequenced Size: | 943 |
Gene | Date | Evidence |
---|---|---|
CG13298 | 2002-01-01 | Sim4 clustering to Release 2 |
CG13298 | 2002-02-22 | Blastp of sequenced clone |
CG13298 | 2003-01-01 | Sim4 clustering to Release 3 |
CG13298 | 2008-04-29 | Release 5.5 accounting |
CG13298 | 2008-08-15 | Release 5.9 accounting |
CG13298 | 2008-12-18 | 5.12 accounting |
943 bp (943 high quality bases) assembled on 2002-02-22
GenBank Submission: AY089603
> RE19804.complete ACTCTCGCCATTTAGAGTGCCCACATTCGCCACCCTGTTCAATTTTGTTT GGGTTTGAGGCCAGACAGAGGAGTCATTAATTTTAAACAAAGGACCACGC TTCAGGACATTCATCCCGGGTCAGACAAAGCCGCCACACACTTTCCTCGA GGCCGAGTGAAAGTTTCTCGCCTTGTCGCCGCTTAACATCCGAAGCGACC GGACATGAACAAGCGCAACCATATCCGCCTGCCGCCAGAGGTGAATCGGC TATTGTACGTGCGGAACCTGCCGTACAAAATCACCTCGGACGAGATGTAC GACATATTCGGCAAATTTGGAGCCATTCGACAGATACGCGTAGGCAACAC TCCGGAAACGCGTGGCACCGCCTTTGTCGTCTACGAGGACATTTTCGATG CCAAGAACGCCTGTGACCATTTATCGGGTTTTAATGTGTGCAATCGCTAT CTGGTGGTGCTCTACTACCAATCCAACAAGGCCTTCAAGCGCGTGGACAT GGACAAGAAACAGGAGGAACTGAACAACATTAAGGCCAAGTACAATCTGA AGACGCCTGAAGCTCCTTAGAACCCACACTTGGTGCGGCAGGCGGTGATG GGGCATAGCCAGACATTGGGCCCCACCAGATGACGCCCCCACTTCCATCG ACCATTTTCCATTGTTTAGGGAACTTCTTGCTCTGCTTATGTGTATACCA AATTTTTGCTATCTACTTGTAGATTTTTTTGATCGCATTTTGTATCATTT GAATCTAATCATTATCATCCATCCATCACTCCATCTATCATATAAACGGC CGGATATCGCGGAACGCAGACATTTGCGCCCGGTTCCGACTGTTTGCAAT CATTTGACGACATTAAGACACTCTCTCATCAAAATAACAAGCAAGTGAAA GTAAAAATAAAAAAAAATTGAAAAACTAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG13298-RA | 1081 | CG13298-RA | 127..1054 | 1..928 | 4640 | 100 | Plus |
CG13298.b | 1014 | CG13298.b | 304..1009 | 223..928 | 3530 | 100 | Plus |
CG13298.a | 781 | CG13298.a | 71..776 | 223..928 | 3530 | 100 | Plus |
CG13298.b | 1014 | CG13298.b | 12..233 | 1..222 | 1110 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 6184626..6185211 | 927..342 | 2915 | 99.8 | Minus |
chr3L | 24539361 | chr3L | 6185467..6185688 | 222..1 | 1110 | 100 | Minus |
chr3L | 24539361 | chr3L | 6185278..6185396 | 341..223 | 595 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 6184651..6185211 | 342..902 | 99 | <- | Minus |
chr3L | 6185278..6185396 | 223..341 | 100 | <- | Minus |
chr3L | 6185467..6185688 | 1..222 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13298-RA | 1..366 | 205..570 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13298-RA | 1..366 | 205..570 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13298-RA | 1..366 | 205..570 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13298-RA | 1..366 | 205..570 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13298-RA | 1..366 | 205..570 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13298-RA | 1..902 | 1..902 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13298-RA | 1..902 | 1..902 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13298-RA | 1..895 | 8..902 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13298-RA | 1..902 | 1..902 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13298-RA | 1..895 | 8..902 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 6192149..6192709 | 342..902 | 100 | <- | Minus |
3L | 6192776..6192894 | 223..341 | 100 | <- | Minus |
3L | 6192965..6193186 | 1..222 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 6192149..6192709 | 342..902 | 100 | <- | Minus |
3L | 6192776..6192894 | 223..341 | 100 | <- | Minus |
3L | 6192965..6193186 | 1..222 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 6192149..6192709 | 342..902 | 100 | <- | Minus |
3L | 6192776..6192894 | 223..341 | 100 | <- | Minus |
3L | 6192965..6193186 | 1..222 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 6185249..6185809 | 342..902 | 100 | <- | Minus |
arm_3L | 6185876..6185994 | 223..341 | 100 | <- | Minus |
arm_3L | 6186065..6186286 | 1..222 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 6185249..6185809 | 342..902 | 100 | <- | Minus |
3L | 6185876..6185994 | 223..341 | 100 | <- | Minus |
3L | 6186065..6186286 | 1..222 | 100 | Minus |
Translation from 204 to 569
> RE19804.hyp MNKRNHIRLPPEVNRLLYVRNLPYKITSDEMYDIFGKFGAIRQIRVGNTP ETRGTAFVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYQSNKAFKRVDMD KKQEELNNIKAKYNLKTPEAP*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG13298-PA | 121 | CG13298-PA | 1..121 | 1..121 | 642 | 100 | Plus |
Translation from 204 to 569
> RE19804.pep MNKRNHIRLPPEVNRLLYVRNLPYKITSDEMYDIFGKFGAIRQIRVGNTP ETRGTAFVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYQSNKAFKRVDMD KKQEELNNIKAKYNLKTPEAP*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF10910-PA | 121 | GF10910-PA | 1..121 | 1..121 | 643 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG14070-PA | 121 | GG14070-PA | 1..121 | 1..121 | 643 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH16287-PA | 121 | GH16287-PA | 1..121 | 1..121 | 627 | 97.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Sf3b6-PA | 121 | CG13298-PA | 1..121 | 1..121 | 642 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI13232-PA | 121 | GI13232-PA | 1..120 | 1..120 | 622 | 97.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL22529-PA | 121 | GL22529-PA | 1..121 | 1..121 | 643 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA12181-PA | 121 | GA12181-PA | 1..121 | 1..121 | 643 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM13852-PA | 121 | GM13852-PA | 1..121 | 1..121 | 643 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD13137-PA | 121 | GD13137-PA | 1..121 | 1..121 | 643 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ12004-PA | 121 | GJ12004-PA | 1..121 | 1..121 | 627 | 97.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK17258-PA | 121 | GK17258-PA | 1..121 | 1..121 | 634 | 99.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE20495-PA | 121 | GE20495-PA | 1..121 | 1..121 | 643 | 100 | Plus |