BDGP Sequence Production Resources |
Search the DGRC for RE19845
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 198 |
Well: | 45 |
Vector: | pFlc-1 |
Associated Gene/Transcript | spn-D-RA |
Protein status: | RE19845.pep: gold |
Sequenced Size: | 1040 |
Gene | Date | Evidence |
---|---|---|
CG5923 | 2002-01-01 | Sim4 clustering to Release 2 |
CG31069 | 2002-06-10 | Blastp of sequenced clone |
CG31069 | 2003-01-01 | Sim4 clustering to Release 3 |
spn-D | 2008-04-29 | Release 5.5 accounting |
spn-D | 2008-08-15 | Release 5.9 accounting |
spn-D | 2008-12-18 | 5.12 accounting |
1040 bp (1040 high quality bases) assembled on 2002-06-10
GenBank Submission: AY071162
> RE19845.complete ATATGGCGCGATTGTTTTGATTATTTGCGATCCCATCTTTTGTTTTTTAA GAGTTTTAAAAAGGATTAAGCAGTCAGGAGTTTACAATGAATCATAGATT TGTTCGGGTTTGGGAGCCATCGCAACCAGAAGCAATTGAAAGAAGACCAT CTGTGTCCCATGAAAACTTTCGAATATTTGATAAATCCTGCTGGGACATT TCCCAAAGTGCCTCAAATAAGATCCTGACGGGCAAGAAAGCCCTGGACAC TCACTTTGGAGGTGGAATATCCTTGGGTCACCTGGTTGAACTGATCGGCA ATTCGGGCACCGGAAAGACGCAAATGTGCTTGCAACTTTGCCTAAATGTA CAAATTCCCAAGGCAGCTGGTGGATTGGAGGGCAGTGCATTATTTATAGA CACCAGGCAGGATTTCCATCCTGACAGATTAATGGGCCTAGCTCTGAAAC TGGAAAGGCAGTATGCACATAGAGTTCCAGAATTTAAGGCTCACAAAATG CTGCAGAAAATCCACTATGTGAGGTGCCCGAAACTGGATCAATTAATGGC CACTGTGCTCAGTTGCCACAGGCATCTCGTCGATCATCCCGATATTAAGC TGATTGTAATCGACTCCCTGGCTTTTACTCTGCGAATGCTTGAGGATGGC GCCCATCGTTACGAGATGCTTCTGGAACTGCATGAAAGCATGCGGAGATT GCAACGTCAACACGAATTGACCTGGGTCTTCACCAATGTGCTCACGCATC GCTACGTCAAGCAAAAGTTCCAAGTGGAGCCCGCCTTGGGGGATCTGCAT TCGCACTTGATCAACGAGCGCATCTGGTTTTCGGGCAGCTCTGAGCTTCA CCTGGGCAAGTCGTGGCGAACGAGTAGATTAATTAAGGAATCCGAATGAG GCTACATCACTTTTACTTTGTGTCGAGTTTAAGCATTAGTTAAAAATAGG TACATGCGTATTAGGATTAAATATGCAATTATCAGATGATAATTTTTCTA TAAAATAAAAATATGTTTAGCAAGAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
spn-D-RA | 1025 | spn-D-RA | 1..1025 | 1..1025 | 5125 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 22989848..22990149 | 723..1024 | 1450 | 98.7 | Plus |
chr3R | 27901430 | chr3R | 22988906..22989128 | 106..328 | 1025 | 97.3 | Plus |
chr3R | 27901430 | chr3R | 22989350..22989506 | 437..593 | 770 | 99.4 | Plus |
chr3R | 27901430 | chr3R | 22989662..22989787 | 594..719 | 630 | 100 | Plus |
chr3R | 27901430 | chr3R | 22989185..22989293 | 328..436 | 545 | 100 | Plus |
chr3R | 27901430 | chr3R | 22988744..22988850 | 1..107 | 490 | 97.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 27166821..27167123 | 723..1025 | 1515 | 100 | Plus |
3R | 32079331 | 3R | 27165880..27166102 | 106..328 | 1115 | 100 | Plus |
3R | 32079331 | 3R | 27166322..27166480 | 435..593 | 795 | 100 | Plus |
3R | 32079331 | 3R | 27166636..27166764 | 594..722 | 645 | 100 | Plus |
3R | 32079331 | 3R | 27166159..27166267 | 328..436 | 545 | 100 | Plus |
3R | 32079331 | 3R | 27165718..27165824 | 1..107 | 535 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 26907652..26907954 | 723..1025 | 1515 | 100 | Plus |
3R | 31820162 | 3R | 26906711..26906933 | 106..328 | 1115 | 100 | Plus |
3R | 31820162 | 3R | 26907153..26907311 | 435..593 | 795 | 100 | Plus |
3R | 31820162 | 3R | 26907467..26907595 | 594..722 | 645 | 100 | Plus |
3R | 31820162 | 3R | 26906990..26907098 | 328..436 | 545 | 100 | Plus |
3R | 31820162 | 3R | 26906549..26906655 | 1..107 | 535 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
blood | 7410 | blood BLOOD 7410bp | 1473..1505 | 991..1023 | 120 | 84.8 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 22989848..22990149 | 723..1024 | 98 | Plus | |
chr3R | 22988744..22988849 | 1..106 | 97 | -> | Plus |
chr3R | 22988907..22989128 | 107..328 | 97 | -> | Plus |
chr3R | 22989186..22989292 | 329..435 | 100 | -> | Plus |
chr3R | 22989349..22989506 | 436..593 | 98 | -> | Plus |
chr3R | 22989662..22989790 | 594..722 | 99 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
spn-D-RA | 1..813 | 87..899 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
spn-D-RA | 1..813 | 87..899 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
spn-D-RA | 1..813 | 87..899 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
spn-D-RA | 1..813 | 87..899 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
spn-D-RA | 1..813 | 87..899 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
spn-D-RA | 1..1024 | 1..1024 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
spn-D-RA | 1..1024 | 1..1024 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
spn-D-RA | 3..1026 | 1..1024 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
spn-D-RA | 1..1023 | 1..1023 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
spn-D-RA | 3..1026 | 1..1024 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 27165718..27165823 | 1..106 | 100 | -> | Plus |
3R | 27165881..27166102 | 107..328 | 100 | -> | Plus |
3R | 27166160..27166266 | 329..435 | 100 | -> | Plus |
3R | 27166323..27166480 | 436..593 | 100 | -> | Plus |
3R | 27166636..27166764 | 594..722 | 100 | -> | Plus |
3R | 27166821..27167122 | 723..1024 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 27165718..27165823 | 1..106 | 100 | -> | Plus |
3R | 27165881..27166102 | 107..328 | 100 | -> | Plus |
3R | 27166160..27166266 | 329..435 | 100 | -> | Plus |
3R | 27166323..27166480 | 436..593 | 100 | -> | Plus |
3R | 27166636..27166764 | 594..722 | 100 | -> | Plus |
3R | 27166821..27167122 | 723..1024 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 27165718..27165823 | 1..106 | 100 | -> | Plus |
3R | 27165881..27166102 | 107..328 | 100 | -> | Plus |
3R | 27166160..27166266 | 329..435 | 100 | -> | Plus |
3R | 27166323..27166480 | 436..593 | 100 | -> | Plus |
3R | 27166636..27166764 | 594..722 | 100 | -> | Plus |
3R | 27166821..27167122 | 723..1024 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 22991440..22991545 | 1..106 | 100 | -> | Plus |
arm_3R | 22991603..22991824 | 107..328 | 100 | -> | Plus |
arm_3R | 22991882..22991988 | 329..435 | 100 | -> | Plus |
arm_3R | 22992045..22992202 | 436..593 | 100 | -> | Plus |
arm_3R | 22992358..22992486 | 594..722 | 100 | -> | Plus |
arm_3R | 22992543..22992844 | 723..1024 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 26906712..26906933 | 107..328 | 100 | -> | Plus |
3R | 26906991..26907097 | 329..435 | 100 | -> | Plus |
3R | 26907154..26907311 | 436..593 | 100 | -> | Plus |
3R | 26907467..26907595 | 594..722 | 100 | -> | Plus |
3R | 26907652..26907953 | 723..1024 | 100 | Plus | |
3R | 26906549..26906654 | 1..106 | 100 | -> | Plus |
Translation from 86 to 898
> RE19845.hyp MNHRFVRVWEPSQPEAIERRPSVSHENFRIFDKSCWDISQSASNKILTGK KALDTHFGGGISLGHLVELIGNSGTGKTQMCLQLCLNVQIPKAAGGLEGS ALFIDTRQDFHPDRLMGLALKLERQYAHRVPEFKAHKMLQKIHYVRCPKL DQLMATVLSCHRHLVDHPDIKLIVIDSLAFTLRMLEDGAHRYEMLLELHE SMRRLQRQHELTWVFTNVLTHRYVKQKFQVEPALGDLHSHLINERIWFSG SSELHLGKSWRTSRLIKESE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
spn-D-PA | 270 | CG31069-PA | 1..270 | 1..270 | 1429 | 100 | Plus |
spn-B-PA | 341 | CG3325-PA | 86..289 | 44..255 | 188 | 28.8 | Plus |
spn-A-PB | 279 | CG7948-PB | 41..252 | 45..267 | 171 | 27.8 | Plus |
spn-A-PA | 336 | CG7948-PA | 98..309 | 45..267 | 171 | 27.8 | Plus |
Translation from 86 to 898
> RE19845.pep MNHRFVRVWEPSQPEAIERRPSVSHENFRIFDKSCWDISQSASNKILTGK KALDTHFGGGISLGHLVELIGNSGTGKTQMCLQLCLNVQIPKAAGGLEGS ALFIDTRQDFHPDRLMGLALKLERQYAHRVPEFKAHKMLQKIHYVRCPKL DQLMATVLSCHRHLVDHPDIKLIVIDSLAFTLRMLEDGAHRYEMLLELHE SMRRLQRQHELTWVFTNVLTHRYVKQKFQVEPALGDLHSHLINERIWFSG SSELHLGKSWRTSRLIKESE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF23286-PA | 234 | GF23286-PA | 2..213 | 40..251 | 812 | 70.8 | Plus |
Dana\GF16205-PA | 334 | GF16205-PA | 94..307 | 45..267 | 166 | 27.6 | Plus |
Dana\GF17509-PA | 345 | GF17509-PA | 55..254 | 6..217 | 164 | 25.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG11535-PA | 191 | GG11535-PA | 1..191 | 80..270 | 969 | 95.3 | Plus |
Dere\GG11967-PA | 335 | GG11967-PA | 100..308 | 48..267 | 172 | 28.2 | Plus |
Dere\GG16853-PA | 341 | GG16853-PA | 55..289 | 6..255 | 147 | 26.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH17957-PA | 246 | GH17957-PA | 15..241 | 42..266 | 486 | 43.5 | Plus |
Dgri\GH17480-PA | 349 | GH17480-PA | 55..288 | 6..249 | 192 | 27.6 | Plus |
Dgri\GH18396-PA | 352 | GH18396-PA | 112..335 | 46..270 | 181 | 29.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
spn-D-PA | 270 | CG31069-PA | 1..270 | 1..270 | 1429 | 100 | Plus |
spn-B-PA | 341 | CG3325-PA | 86..289 | 44..255 | 188 | 28.8 | Plus |
spn-A-PB | 279 | CG7948-PB | 41..252 | 45..267 | 171 | 27.8 | Plus |
spn-A-PA | 336 | CG7948-PA | 98..309 | 45..267 | 171 | 27.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI16495-PA | 181 | GI16495-PA | 3..176 | 96..266 | 314 | 40.7 | Plus |
Dmoj\GI23388-PA | 347 | GI23388-PA | 107..275 | 46..220 | 174 | 31.3 | Plus |
Dmoj\GI22807-PA | 345 | GI22807-PA | 55..288 | 6..249 | 160 | 27.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL23908-PA | 191 | GL23908-PA | 1..190 | 80..269 | 737 | 71.1 | Plus |
Dper\GL23505-PA | 348 | GL23505-PA | 55..295 | 6..268 | 175 | 25.4 | Plus |
Dper\GL13479-PA | 335 | GL13479-PA | 95..318 | 46..270 | 160 | 28.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA15983-PA | 254 | GA15983-PA | 6..253 | 23..269 | 896 | 66.9 | Plus |
Dpse\GA17378-PA | 348 | GA17378-PA | 55..295 | 6..268 | 177 | 25.8 | Plus |
Dpse\GA20711-PA | 335 | GA20711-PA | 95..318 | 46..270 | 160 | 28.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM10376-PA | 270 | GM10376-PA | 1..270 | 1..270 | 1393 | 95.9 | Plus |
Dsec\GM12184-PA | 336 | GM12184-PA | 101..309 | 48..267 | 173 | 28.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD21329-PA | 267 | GD21329-PA | 8..266 | 8..266 | 1362 | 97.7 | Plus |
Dsim\GD17366-PA | 336 | GD17366-PA | 101..309 | 48..267 | 173 | 28.2 | Plus |
Dsim\GD18959-PA | 341 | GD18959-PA | 55..289 | 6..255 | 146 | 26.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ16038-PA | 245 | GJ16038-PA | 4..237 | 33..266 | 534 | 45.1 | Plus |
Dvir\GJ10382-PA | 351 | GJ10382-PA | 111..279 | 46..220 | 177 | 31.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK13653-PA | 269 | GK13653-PA | 7..269 | 30..267 | 592 | 44.9 | Plus |
Dwil\GK10943-PA | 349 | GK10943-PA | 56..306 | 6..264 | 188 | 27 | Plus |
Dwil\GK13420-PA | 355 | GK13420-PA | 115..212 | 46..152 | 171 | 36.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE23723-PA | 406 | GE23723-PA | 144..406 | 8..270 | 1278 | 90.5 | Plus |
Dyak\GE23416-PA | 335 | GE23416-PA | 100..308 | 48..267 | 173 | 28.2 | Plus |
Dyak\GE24233-PA | 341 | GE24233-PA | 86..289 | 44..255 | 157 | 29.2 | Plus |