BDGP Sequence Production Resources |
Search the DGRC for RE19904
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 199 |
Well: | 4 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG9773-RA |
Protein status: | RE19904.pep: gold |
Preliminary Size: | 828 |
Sequenced Size: | 1011 |
Gene | Date | Evidence |
---|---|---|
CG9773 | 2002-01-01 | Sim4 clustering to Release 2 |
CG9773 | 2002-04-26 | Blastp of sequenced clone |
CG9773 | 2003-01-01 | Sim4 clustering to Release 3 |
CG9773 | 2008-04-29 | Release 5.5 accounting |
CG9773 | 2008-08-15 | Release 5.9 accounting |
CG9773 | 2008-12-18 | 5.12 accounting |
1011 bp (1011 high quality bases) assembled on 2002-04-26
GenBank Submission: AY113422
> RE19904.complete GGTATTTCTTGGCGCTGAGGGCGCAGCCACTCTGCTGAAAACACAAGAAA TTTGTTTTAAACAAAACAAAATGACTCAATATAGCCACGTTAAGTATACA CAATCGCCGACGCCGTCGGTGGTTTCCGGCTACTCGAGTGCCTCGCGTCT CCATTCGCCATTACCGCCACCCGCCAACCACCGGAGGGACTGCCTCTCGG CGACCACCAAGAGCTACAAATACCTGCGACGTCTGCTCAAGTTCAATCAA ATGGACTTCGAGTTTGCCCTGTGGCAGATGCTCTACCTCTTTGTGGCGCC CCAAAAGGTGTACCGGAACTTCAACTACCGGAAACAGACCAAGTCACAGT TCGCCCGCGACGATCCGGCCTTTCTGGTCCTCCTGGTCGTCTGCCTATGT GTCACCTCCCTGGGCTTTGCGTATGTGCTGGGACTGTCTTTCTGGCAGAG CATCTCGTTCATATTCTATGTGGTATTCGTGGACTGTATTTTCGTGGGCA TCATAATAGCCTCGTTCTTCTGGGCGGTGACGAATCGGTATCTGCGCACA AATAGCCTGGAGCCGGATATCGAGTGGGGCTATGCCTTCGATGTCCATCT AAATGCCTTCTTTCCGCCACTGATGCTGCTGCACTTCATCCAGCTGTTCT TCTACAACTGGCTGATCAGCCAAACGTGGTTCATCTCGCGATTTCTGGGC AACACCTTTTGGTTGATGGGCATGGGCTATTATGTGTACATCACATTTCT GGGATACAATTGCATTCCCCATCTGAAAAACACCCGCATCATTCTCATCG CCCTGCCCATCATCTTTCTACTGTTTCTGGTCGTCACAATTATTGGTTGG AACGCAACGATATCCTTTGTCAATTTCTACAAGTATCGCGTATATTAGTA ATGCAATGTGCGTTGTAAATTATTCTGCGTTTAGTTGCTAAGCCACTATA CTACAATTATGACTAATAAACTAATTAATTTAGCGTTATCCAAACCAAAA AAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG9773-RA | 1084 | CG9773-RA | 66..1062 | 1..997 | 4985 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 4502160..4502560 | 401..1 | 2005 | 100 | Minus |
chr3R | 27901430 | chr3R | 4501544..4501905 | 762..401 | 1810 | 100 | Minus |
chr3R | 27901430 | chr3R | 4501255..4501489 | 996..762 | 1175 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 8417019..8417419 | 401..1 | 2005 | 100 | Minus |
3R | 31820162 | 3R | 8416403..8416764 | 762..401 | 1810 | 100 | Minus |
3R | 31820162 | 3R | 8416113..8416348 | 997..762 | 1180 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 4501255..4501489 | 762..996 | 100 | <- | Minus |
chr3R | 4501545..4501904 | 402..761 | 100 | <- | Minus |
chr3R | 4502160..4502560 | 1..401 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9773-RA | 1..828 | 71..898 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9773-RA | 1..828 | 71..898 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9773-RA | 1..828 | 71..898 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9773-RA | 1..828 | 71..898 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9773-RA | 1..828 | 71..898 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9773-RA | 1..996 | 1..996 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9773-RA | 40..1035 | 1..996 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9773-RA | 26..1021 | 1..996 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9773-RA | 1..996 | 1..996 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9773-RA | 26..1021 | 1..996 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 8675283..8675517 | 762..996 | 100 | <- | Minus |
3R | 8675573..8675932 | 402..761 | 100 | <- | Minus |
3R | 8676188..8676588 | 1..401 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 8675283..8675517 | 762..996 | 100 | <- | Minus |
3R | 8675573..8675932 | 402..761 | 100 | <- | Minus |
3R | 8676188..8676588 | 1..401 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 8675283..8675517 | 762..996 | 100 | <- | Minus |
3R | 8675573..8675932 | 402..761 | 100 | <- | Minus |
3R | 8676188..8676588 | 1..401 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 4501295..4501654 | 402..761 | 100 | <- | Minus |
arm_3R | 4501005..4501239 | 762..996 | 100 | <- | Minus |
arm_3R | 4501910..4502310 | 1..401 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 8416114..8416348 | 762..996 | 100 | <- | Minus |
3R | 8416404..8416763 | 402..761 | 100 | <- | Minus |
3R | 8417019..8417419 | 1..401 | 100 | Minus |
Translation from 0 to 897
> RE19904.hyp VFLGAEGAATLLKTQEICFKQNKMTQYSHVKYTQSPTPSVVSGYSSASRL HSPLPPPANHRRDCLSATTKSYKYLRRLLKFNQMDFEFALWQMLYLFVAP QKVYRNFNYRKQTKSQFARDDPAFLVLLVVCLCVTSLGFAYVLGLSFWQS ISFIFYVVFVDCIFVGIIIASFFWAVTNRYLRTNSLEPDIEWGYAFDVHL NAFFPPLMLLHFIQLFFYNWLISQTWFISRFLGNTFWLMGMGYYVYITFL GYNCIPHLKNTRIILIALPIIFLLFLVVTIIGWNATISFVNFYKYRVY*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG9773-PA | 275 | CG9773-PA | 1..275 | 24..298 | 1478 | 100 | Plus |
Translation from 70 to 897
> RE19904.pep MTQYSHVKYTQSPTPSVVSGYSSASRLHSPLPPPANHRRDCLSATTKSYK YLRRLLKFNQMDFEFALWQMLYLFVAPQKVYRNFNYRKQTKSQFARDDPA FLVLLVVCLCVTSLGFAYVLGLSFWQSISFIFYVVFVDCIFVGIIIASFF WAVTNRYLRTNSLEPDIEWGYAFDVHLNAFFPPLMLLHFIQLFFYNWLIS QTWFISRFLGNTFWLMGMGYYVYITFLGYNCIPHLKNTRIILIALPIIFL LFLVVTIIGWNATISFVNFYKYRVY*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16844-PA | 275 | GF16844-PA | 1..275 | 1..275 | 1421 | 96.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17433-PA | 275 | GG17433-PA | 1..275 | 1..275 | 1446 | 99.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH19021-PA | 275 | GH19021-PA | 1..275 | 1..275 | 1284 | 88.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG9773-PA | 275 | CG9773-PA | 1..275 | 1..275 | 1478 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI22834-PA | 275 | GI22834-PA | 1..275 | 1..275 | 1365 | 92.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL12139-PA | 275 | GL12139-PA | 1..275 | 1..275 | 1354 | 91.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA22025-PA | 275 | GA22025-PA | 1..275 | 1..275 | 1354 | 91.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM26326-PA | 275 | GM26326-PA | 1..275 | 1..275 | 1446 | 99.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20852-PA | 275 | GD20852-PA | 1..275 | 1..275 | 1446 | 99.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ24589-PA | 275 | GJ24589-PA | 1..275 | 1..275 | 1368 | 92.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK11280-PA | 276 | GK11280-PA | 1..276 | 1..275 | 1303 | 92.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE24835-PA | 275 | GE24835-PA | 1..275 | 1..275 | 1446 | 99.6 | Plus |