BDGP Sequence Production Resources |
Search the DGRC for RE20371
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 203 |
Well: | 71 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG13912-RA |
Protein status: | RE20371.pep: gold |
Preliminary Size: | 489 |
Sequenced Size: | 833 |
Gene | Date | Evidence |
---|---|---|
CG13912 | 2002-01-01 | Sim4 clustering to Release 2 |
CG13912 | 2003-01-01 | Sim4 clustering to Release 3 |
CG13912 | 2005-05-03 | Blastp of sequenced clone |
CG13912 | 2008-04-29 | Release 5.5 accounting |
CG13912 | 2008-08-15 | Release 5.9 accounting |
CG13912 | 2008-12-18 | 5.12 accounting |
833 bp (833 high quality bases) assembled on 2006-06-05
GenBank Submission: BT022087
> RE20371.complete AGTTGGATTTCAGCAGCGGAGCAGACCAGTCGGTTCGCGATCAGTGCAAA TAAACAGATCCACGTGCCGAGCATAGAAACTAGCCATTGAATACATCACC AGATCGGCAATAAAACACGCAGTGACTGATAAGAGTGCAGGCAAAAAAAA TAAAATAACAAATCAGATAGACAAAAATACGGCACTACGGATACAGGCAT TTCTGAACAGCCAAGATGATGTCACATACTGTGAGGGTCTTCAAGATGAT GTACATTGTGGCGGGCATCCTCATCAGCAATGCGGAGATCTGCGACACAG TGGACCGCATCCAGATAGCGCCACGCGTCGACCTCAAGCCGGAATACGAT CACAGGTACTTGACCTCCGGAGGCAATAGTCCCGGCTCCCGATCCCGCAC CCACTCTCGACAGAATTCCGGAAGTGGATCCGGATCGGAGGAAGGATCCC CCACCAAGAGGCGGAGAGTCAGCGTTTCCGGTATCGCGGGGGGCGTGGTC AGGGGCGTCACTAGCCAGGTCACCAAGAGAGTGGGCCACCGCTTCGTCTG GCTATCCGACATCCGGCTCATTCTCCGGCAATGGCGACTCCTGGCCCTCA GCTTCAACCTCTGGACCATTCCCAACTTCTTGGTGCAGTGCCTCACCAGC TACATGAGCAAGAAGCTGCTCATCAATAGCGACTGTGATATGATCTACAA GTAGGATTAGGTTATGGGATATTGAGTAGTAGGACAGCGCACCGAGAGGT TGCAATTTATTGTTACTTTAGTTTTTACATAGCTTTAAGATTTGAATAAA CAACTGCTAGACATAGTAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
297 | 6995 | 297 DMIS297 6995bp Derived from X03431 (g8146) (Rel. 36, Last updated, Version 2). | 3145..3195 | 768..815 | 113 | 72.5 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 1189137..1189371 | 1..235 | 100 | -> | Plus |
chr3L | 1189439..1190019 | 236..817 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13912-RA | 1..489 | 216..704 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13912-RA | 1..489 | 216..704 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13912-RA | 1..489 | 216..704 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13912-RA | 1..489 | 216..704 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13912-RA | 1..489 | 216..704 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13912-RA | 1..704 | 1..704 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13912-RA | 1..816 | 1..816 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13912-RA | 3..818 | 1..816 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13912-RA | 1..704 | 1..704 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13912-RA | 3..818 | 1..816 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 1189590..1189824 | 1..235 | 100 | -> | Plus |
3L | 1189892..1190472 | 236..817 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 1189590..1189824 | 1..235 | 100 | -> | Plus |
3L | 1189892..1190472 | 236..817 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 1189590..1189824 | 1..235 | 100 | -> | Plus |
3L | 1189892..1190472 | 236..817 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 1189590..1189824 | 1..235 | 100 | -> | Plus |
arm_3L | 1189892..1190472 | 236..817 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 1189590..1189824 | 1..235 | 100 | -> | Plus |
3L | 1189892..1190472 | 236..817 | 99 | Plus |
Translation from 215 to 703
> RE20371.hyp MMSHTVRVFKMMYIVAGILISNAEICDTVDRIQIAPRVDLKPEYDHRYLT SGGNSPGSRSRTHSRQNSGSGSGSEEGSPTKRRRVSVSGIAGGVVRGVTS QVTKRVGHRFVWLSDIRLILRQWRLLALSFNLWTIPNFLVQCLTSYMSKK LLINSDCDMIYK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG13912-PA | 162 | CG13912-PA | 1..162 | 1..162 | 837 | 100 | Plus |
Translation from 215 to 703
> RE20371.pep MMSHTVRVFKMMYIVAGILISNAEICDTVDRIQIAPRVDLKPEYDHRYLT SGGNSPGSRSRTHSRQNSGSGSGSEEGSPTKRRRVSVSGIAGGVVRGVTS QVTKRVGHRFVWLSDIRLILRQWRLLALSFNLWTIPNFLVQCLTSYMSKK LLINSDCDMIYK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF24432-PA | 165 | GF24432-PA | 1..165 | 1..162 | 582 | 78.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG14756-PA | 159 | GG14756-PA | 1..159 | 1..162 | 782 | 92.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH15821-PA | 150 | GH15821-PA | 1..150 | 1..162 | 437 | 54.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG13912-PA | 162 | CG13912-PA | 1..162 | 1..162 | 837 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI12602-PA | 149 | GI12602-PA | 1..149 | 1..162 | 460 | 57.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL25404-PA | 165 | GL25404-PA | 1..165 | 1..162 | 575 | 73.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA12620-PA | 165 | GA12620-PA | 1..165 | 1..162 | 579 | 72.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM14375-PA | 161 | GM14375-PA | 1..161 | 1..162 | 822 | 96.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD13591-PA | 162 | GD13591-PA | 1..162 | 1..162 | 846 | 98.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ12725-PA | 155 | GJ12725-PA | 1..155 | 1..162 | 453 | 57.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK17330-PA | 150 | GK17330-PA | 1..150 | 1..162 | 571 | 67.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE21119-PA | 162 | GE21119-PA | 1..162 | 1..162 | 827 | 94.4 | Plus |