Clone RE20410 Report

Search the DGRC for RE20410

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:204
Well:10
Vector:pFlc-1
Associated Gene/TranscriptCG31812-RB
Protein status:RE20410.pep: Imported from assembly
Sequenced Size:1382

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG31812 2003-01-01 Sim4 clustering to Release 3
CG31812 2008-04-29 Picked prior to 5.5
CG31812 2008-12-18 5.12 accounting

Clone Sequence Records

RE20410.complete Sequence

1382 bp assembled on 2008-10-20

GenBank Submission: BT044568.1

> RE20410.complete
GCGGTTTACATTTGAGTGCAAAAGAAAGCGCTGCTTTAATAAGAATGCGA
ATTTCACGCCTCTTCCAAGTGGACAGGATGGCGAACGTTACAAGGGAAGA
TTTACAGGACTATCCGTCGAGATAGTTGATCCCGAACAGGCTAAATCCCT
GCACGATAATGGTTGTTTTGGCAAGGGAAGCAAATCTCGCGGAGGGCCAG
CAAGTGGAGACGAGAACGAAACCCTGTTTCTCGGAATGGAAGAGTCTTGC
TTCCTGGCCCACTATTTAAATGTTTTAGATATAACCAACTCAGCTGGTTA
TTTAATGGACTTCTGCATGTTTGTGGAGGTCGCCAAAGAGCACAATGAGA
AATTTGTTGAGAACTTGGCCAGCTATGTGTATTTGAAGTCCAAGAATTGG
GTCATCAAGAGCGGTATTAAGTTCGGCGGTGATTTTCTTATCTACAAGCA
AAGTCCTCGATTGTACCATGCCAGCTTTTTGGTCATTGTGCAAAAGCCTG
GTGATACGGATCACTATCAATCAAAGAACTTGAAGGGTGTTCAACGCGTG
GCAGAAACTTCTGATAAGGATGTGCTGCTCCTGACTGTCCAACCGCCTAA
GAAGATAAGCTCTTCCAGGGATTTGCAGGAAGCCACAGTAACAGAGACTA
TTGTGCGGCGTTTTAATTACTTAACTTTTGTACAAAGCAAACAACAATAA
GGAACTACTCAGGGACTCTACAACTTCTCCAGCCGGTGCTTCTTGGGTAT
GCCAGTGCTGCGATAGTCGGCGCGCTCCTGCAGATATATCTGCTTGCACT
CCTCCTTGAAGGCTTCGTTCTGATACCACTGGGTGAGGCATTCCTTCAGG
GCTGAGTTCTGTTTCCGACAGGTGGCCACCATCAGTATACTGCTGGCCTT
GCAGCACTCCTGGAAGTCGGCCACCTCCTTTGAGCAGAACTCCGTCTTGG
CACGATCGCGCATTATCTTGGGTATCAGCACTTCGCGCTCCACCTTGCGC
AACCTAGTATCATTTGGATCGCCTAGCAAGGGCAGTGTCAGTTGGTGGTC
ATATTCGATTATTCTGAGGACTCACCCAGTCAATGGGGATTGTGGGGATC
CACGGCTGGCTGTTGTTCAAGGCTCATATTGTGTTAAAAATACTATTTAT
TTTGTATAACAACTTTTAGAGTGACTGCCACCGGTGCGATGAAAAATACT
AGGGATATAAAAATACCACGAGTATACTAAAATTAGATTCATTTTTAAGA
TATAAAATATAATTTTATAATTCGATTTCTTGAATATTGAAATTACTTAA
TGATCGTCTAGAGCACAAAATTTGCCCGACTGATCGCTAATTCAATAATA
TATTTTTTTTTAAACCAAAAAAAAAAAAAAAA

RE20410.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:10:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG31812-RB 764 CG31812-RB 68..764 4..700 3470 99.8 Plus
CG17996-RA 590 CG17996-RA 189..590 1023..622 2010 100 Minus
CG17996-RA 590 CG17996-RA 1..190 1264..1075 935 99.4 Minus
CG17331-RA 921 CG17331-RA 825..921 1366..1270 470 98.9 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:31:14
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 16729005..16729914 438..1347 4430 99.1 Plus
chr2L 23010047 chr2L 16728517..16728950 4..437 2020 97.7 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:40:45 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:31:12
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16730271..16731199 438..1366 4615 99.8 Plus
2L 23513712 2L 16729783..16730216 4..437 2155 99.8 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:28:44
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16730271..16731199 438..1366 4615 99.7 Plus
2L 23513712 2L 16729783..16730216 4..437 2155 99.7 Plus
Blast to na_te.dros performed 2019-03-16 02:31:12
Subject Length Description Subject Range Query Range Score Percent Strand
accord 7404 accord ACCORD 7404bp 1343..1409 1236..1303 130 67.6 Plus

RE20410.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:32:24 Download gff for RE20410.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 16728521..16728950 8..437 97 -> Plus
chr2L 16729005..16729914 438..1345 95 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:00:54 Download gff for RE20410.complete
Subject Subject Range Query Range Percent Splice Strand
CG31812-RB 3..702 1..700 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:15:45 Download gff for RE20410.complete
Subject Subject Range Query Range Percent Splice Strand
CG31812-RB 3..702 1..700 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:00:28 Download gff for RE20410.complete
Subject Subject Range Query Range Percent Splice Strand
CG31812-RB 3..702 1..700 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:13:41 Download gff for RE20410.complete
Subject Subject Range Query Range Percent Splice Strand
CG31812-RB 3..702 1..700 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:54:55 Download gff for RE20410.complete
Subject Subject Range Query Range Percent Splice Strand
CG31812-RB 3..702 1..700 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:15:44 Download gff for RE20410.complete
Subject Subject Range Query Range Percent Splice Strand
CG31812-RB 3..1368 1..1366 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:00:28 Download gff for RE20410.complete
Subject Subject Range Query Range Percent Splice Strand
CG31812-RB 4..1369 1..1366 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-21 18:05:14 Download gff for RE20410.complete
Subject Subject Range Query Range Percent Splice Strand
CG31812-RB 3..702 1..700 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:13:41 Download gff for RE20410.complete
Subject Subject Range Query Range Percent Splice Strand
CG31812-RB 4..1369 1..1366 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:32:24 Download gff for RE20410.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16729780..16730216 1..437 99 -> Plus
2L 16730271..16731199 438..1366 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:32:24 Download gff for RE20410.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16729780..16730216 1..437 99 -> Plus
2L 16730271..16731199 438..1366 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:32:24 Download gff for RE20410.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16729780..16730216 1..437 99 -> Plus
2L 16730271..16731199 438..1366 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:00:28 Download gff for RE20410.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16729780..16730216 1..437 99 -> Plus
arm_2L 16730271..16731199 438..1366 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:46:38 Download gff for RE20410.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16729780..16730216 1..437 99 -> Plus
2L 16730271..16731199 438..1366 99   Plus

RE20410.hyp Sequence

Translation from 0 to 699

> RE20410.hyp
QFTFECKRKRCFNKNANFTPLPSGQDGERYKGRFTGLSVEIVDPEQAKSL
HDNGCFGKGSKSRGGPASGDENETLFLGMEESCFLAHYLNVLDITNSAGY
LMDFCMFVEVAKEHNEKFVENLASYVYLKSKNWVIKSGIKFGGDFLIYKQ
SPRLYHASFLVIVQKPGDTDHYQSKNLKGVQRVAETSDKDVLLLTVQPPK
KISSSRDLQEATVTETIVRRFNYLTFVQSKQQ*

RE20410.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:21:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG31812-PB 233 CG31812-PB 2..233 1..232 1218 100 Plus

RE20410.pep Sequence

Translation from 1 to 699

> RE20410.pep
RFTFECKRKRCFNKNANFTPLPSGQDGERYKGRFTGLSVEIVDPEQAKSL
HDNGCFGKGSKSRGGPASGDENETLFLGMEESCFLAHYLNVLDITNSAGY
LMDFCMFVEVAKEHNEKFVENLASYVYLKSKNWVIKSGIKFGGDFLIYKQ
SPRLYHASFLVIVQKPGDTDHYQSKNLKGVQRVAETSDKDVLLLTVQPPK
KISSSRDLQEATVTETIVRRFNYLTFVQSKQQ*

RE20410.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 11:50:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20864-PA 230 GF20864-PA 3..230 2..232 838 68.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 11:50:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22764-PA 233 GG22764-PA 2..233 1..232 1105 90.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 11:50:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11377-PA 244 GH11377-PA 8..242 7..231 667 57 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:11:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG31812-PB 233 CG31812-PB 2..233 1..232 1214 99.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 11:50:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18082-PA 242 GI18082-PA 3..242 2..232 639 53.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 11:50:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18779-PA 244 GL18779-PA 2..244 1..231 837 67.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 11:50:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16496-PA 244 GA16496-PA 2..244 1..231 832 66.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 11:50:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17198-PA 233 GM17198-PA 2..233 1..232 1147 91.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 11:50:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24075-PA 233 GD24075-PA 2..233 1..232 1139 91.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 11:50:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16733-PA 244 GJ16733-PA 3..243 2..232 686 56 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 11:50:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15008-PA 243 GK15008-PA 3..239 2..232 747 59.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 11:50:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12758-PA 233 GE12758-PA 2..233 1..232 1099 89.2 Plus