BDGP Sequence Production Resources |
Search the DGRC for RE20410
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 204 |
Well: | 10 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG31812-RB |
Protein status: | RE20410.pep: Imported from assembly |
Sequenced Size: | 1382 |
Gene | Date | Evidence |
---|---|---|
CG31812 | 2003-01-01 | Sim4 clustering to Release 3 |
CG31812 | 2008-04-29 | Picked prior to 5.5 |
CG31812 | 2008-12-18 | 5.12 accounting |
1382 bp assembled on 2008-10-20
GenBank Submission: BT044568.1
> RE20410.complete GCGGTTTACATTTGAGTGCAAAAGAAAGCGCTGCTTTAATAAGAATGCGA ATTTCACGCCTCTTCCAAGTGGACAGGATGGCGAACGTTACAAGGGAAGA TTTACAGGACTATCCGTCGAGATAGTTGATCCCGAACAGGCTAAATCCCT GCACGATAATGGTTGTTTTGGCAAGGGAAGCAAATCTCGCGGAGGGCCAG CAAGTGGAGACGAGAACGAAACCCTGTTTCTCGGAATGGAAGAGTCTTGC TTCCTGGCCCACTATTTAAATGTTTTAGATATAACCAACTCAGCTGGTTA TTTAATGGACTTCTGCATGTTTGTGGAGGTCGCCAAAGAGCACAATGAGA AATTTGTTGAGAACTTGGCCAGCTATGTGTATTTGAAGTCCAAGAATTGG GTCATCAAGAGCGGTATTAAGTTCGGCGGTGATTTTCTTATCTACAAGCA AAGTCCTCGATTGTACCATGCCAGCTTTTTGGTCATTGTGCAAAAGCCTG GTGATACGGATCACTATCAATCAAAGAACTTGAAGGGTGTTCAACGCGTG GCAGAAACTTCTGATAAGGATGTGCTGCTCCTGACTGTCCAACCGCCTAA GAAGATAAGCTCTTCCAGGGATTTGCAGGAAGCCACAGTAACAGAGACTA TTGTGCGGCGTTTTAATTACTTAACTTTTGTACAAAGCAAACAACAATAA GGAACTACTCAGGGACTCTACAACTTCTCCAGCCGGTGCTTCTTGGGTAT GCCAGTGCTGCGATAGTCGGCGCGCTCCTGCAGATATATCTGCTTGCACT CCTCCTTGAAGGCTTCGTTCTGATACCACTGGGTGAGGCATTCCTTCAGG GCTGAGTTCTGTTTCCGACAGGTGGCCACCATCAGTATACTGCTGGCCTT GCAGCACTCCTGGAAGTCGGCCACCTCCTTTGAGCAGAACTCCGTCTTGG CACGATCGCGCATTATCTTGGGTATCAGCACTTCGCGCTCCACCTTGCGC AACCTAGTATCATTTGGATCGCCTAGCAAGGGCAGTGTCAGTTGGTGGTC ATATTCGATTATTCTGAGGACTCACCCAGTCAATGGGGATTGTGGGGATC CACGGCTGGCTGTTGTTCAAGGCTCATATTGTGTTAAAAATACTATTTAT TTTGTATAACAACTTTTAGAGTGACTGCCACCGGTGCGATGAAAAATACT AGGGATATAAAAATACCACGAGTATACTAAAATTAGATTCATTTTTAAGA TATAAAATATAATTTTATAATTCGATTTCTTGAATATTGAAATTACTTAA TGATCGTCTAGAGCACAAAATTTGCCCGACTGATCGCTAATTCAATAATA TATTTTTTTTTAAACCAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG31812-RB | 764 | CG31812-RB | 68..764 | 4..700 | 3470 | 99.8 | Plus |
CG17996-RA | 590 | CG17996-RA | 189..590 | 1023..622 | 2010 | 100 | Minus |
CG17996-RA | 590 | CG17996-RA | 1..190 | 1264..1075 | 935 | 99.4 | Minus |
CG17331-RA | 921 | CG17331-RA | 825..921 | 1366..1270 | 470 | 98.9 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
accord | 7404 | accord ACCORD 7404bp | 1343..1409 | 1236..1303 | 130 | 67.6 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 16728521..16728950 | 8..437 | 97 | -> | Plus |
chr2L | 16729005..16729914 | 438..1345 | 95 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31812-RB | 3..702 | 1..700 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31812-RB | 3..702 | 1..700 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31812-RB | 3..702 | 1..700 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31812-RB | 3..702 | 1..700 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31812-RB | 3..702 | 1..700 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31812-RB | 3..1368 | 1..1366 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31812-RB | 4..1369 | 1..1366 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31812-RB | 3..702 | 1..700 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31812-RB | 4..1369 | 1..1366 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 16729780..16730216 | 1..437 | 99 | -> | Plus |
2L | 16730271..16731199 | 438..1366 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 16729780..16730216 | 1..437 | 99 | -> | Plus |
2L | 16730271..16731199 | 438..1366 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 16729780..16730216 | 1..437 | 99 | -> | Plus |
2L | 16730271..16731199 | 438..1366 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 16729780..16730216 | 1..437 | 99 | -> | Plus |
arm_2L | 16730271..16731199 | 438..1366 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 16729780..16730216 | 1..437 | 99 | -> | Plus |
2L | 16730271..16731199 | 438..1366 | 99 | Plus |
Translation from 0 to 699
> RE20410.hyp QFTFECKRKRCFNKNANFTPLPSGQDGERYKGRFTGLSVEIVDPEQAKSL HDNGCFGKGSKSRGGPASGDENETLFLGMEESCFLAHYLNVLDITNSAGY LMDFCMFVEVAKEHNEKFVENLASYVYLKSKNWVIKSGIKFGGDFLIYKQ SPRLYHASFLVIVQKPGDTDHYQSKNLKGVQRVAETSDKDVLLLTVQPPK KISSSRDLQEATVTETIVRRFNYLTFVQSKQQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG31812-PB | 233 | CG31812-PB | 2..233 | 1..232 | 1218 | 100 | Plus |
Translation from 1 to 699
> RE20410.pep RFTFECKRKRCFNKNANFTPLPSGQDGERYKGRFTGLSVEIVDPEQAKSL HDNGCFGKGSKSRGGPASGDENETLFLGMEESCFLAHYLNVLDITNSAGY LMDFCMFVEVAKEHNEKFVENLASYVYLKSKNWVIKSGIKFGGDFLIYKQ SPRLYHASFLVIVQKPGDTDHYQSKNLKGVQRVAETSDKDVLLLTVQPPK KISSSRDLQEATVTETIVRRFNYLTFVQSKQQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF20864-PA | 230 | GF20864-PA | 3..230 | 2..232 | 838 | 68.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG22764-PA | 233 | GG22764-PA | 2..233 | 1..232 | 1105 | 90.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH11377-PA | 244 | GH11377-PA | 8..242 | 7..231 | 667 | 57 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG31812-PB | 233 | CG31812-PB | 2..233 | 1..232 | 1214 | 99.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI18082-PA | 242 | GI18082-PA | 3..242 | 2..232 | 639 | 53.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL18779-PA | 244 | GL18779-PA | 2..244 | 1..231 | 837 | 67.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA16496-PA | 244 | GA16496-PA | 2..244 | 1..231 | 832 | 66.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM17198-PA | 233 | GM17198-PA | 2..233 | 1..232 | 1147 | 91.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD24075-PA | 233 | GD24075-PA | 2..233 | 1..232 | 1139 | 91.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ16733-PA | 244 | GJ16733-PA | 3..243 | 2..232 | 686 | 56 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK15008-PA | 243 | GK15008-PA | 3..239 | 2..232 | 747 | 59.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE12758-PA | 233 | GE12758-PA | 2..233 | 1..232 | 1099 | 89.2 | Plus |